##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727277.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5623215 Sequences flagged as poor quality 0 Sequence length 43 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.13566634034089 33.0 31.0 34.0 30.0 34.0 2 32.27717257832041 34.0 31.0 34.0 30.0 34.0 3 32.36255113845016 34.0 31.0 34.0 30.0 34.0 4 35.93446951610422 37.0 35.0 37.0 35.0 37.0 5 35.81472413912682 37.0 35.0 37.0 35.0 37.0 6 35.83592624503954 37.0 35.0 37.0 35.0 37.0 7 35.77799159377687 37.0 35.0 37.0 35.0 37.0 8 35.752193896196395 37.0 35.0 37.0 35.0 37.0 9 37.48200202197497 39.0 37.0 39.0 35.0 39.0 10 37.32015706317471 39.0 37.0 39.0 34.0 39.0 11 37.43371007510828 39.0 37.0 39.0 35.0 39.0 12 37.33885295155885 39.0 37.0 39.0 34.0 39.0 13 37.39693075936097 39.0 37.0 39.0 34.0 39.0 14 38.5655291501392 40.0 38.0 41.0 34.0 41.0 15 38.52828159691564 40.0 38.0 41.0 34.0 41.0 16 38.46288751185932 40.0 38.0 41.0 34.0 41.0 17 38.4275237564276 40.0 38.0 41.0 34.0 41.0 18 38.38423713124965 40.0 38.0 41.0 34.0 41.0 19 38.39242479613531 40.0 38.0 41.0 34.0 41.0 20 38.28129762066718 40.0 38.0 41.0 34.0 41.0 21 38.20685764282533 40.0 38.0 41.0 34.0 41.0 22 38.135589515961954 40.0 38.0 41.0 33.0 41.0 23 38.023213410833485 40.0 38.0 41.0 33.0 41.0 24 37.9199671362379 40.0 37.0 41.0 33.0 41.0 25 37.83374333010564 40.0 37.0 41.0 33.0 41.0 26 37.478716712770186 39.0 37.0 41.0 32.0 41.0 27 37.26987728550304 39.0 37.0 41.0 31.0 41.0 28 37.12100266484565 39.0 36.0 41.0 31.0 41.0 29 37.07245908257109 39.0 36.0 40.0 31.0 41.0 30 36.98931998865418 39.0 36.0 40.0 31.0 41.0 31 36.779785051789766 39.0 36.0 40.0 30.0 41.0 32 36.66718291937975 39.0 36.0 40.0 30.0 41.0 33 36.48629493981646 39.0 35.0 40.0 30.0 41.0 34 36.35331745273834 39.0 35.0 40.0 30.0 41.0 35 36.20194106040761 39.0 35.0 40.0 29.0 41.0 36 36.04803444292989 39.0 35.0 40.0 28.0 41.0 37 35.80955449862756 38.0 35.0 40.0 27.0 41.0 38 35.69574611676772 38.0 35.0 40.0 27.0 41.0 39 35.527859240665705 38.0 35.0 40.0 26.0 41.0 40 35.38349271724449 38.0 34.0 40.0 26.0 41.0 41 35.23873069053913 38.0 34.0 40.0 25.0 41.0 42 35.033172837958354 38.0 34.0 40.0 24.0 41.0 43 31.668619819800593 35.0 29.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 8.0 10 20.0 11 30.0 12 27.0 13 25.0 14 34.0 15 72.0 16 145.0 17 258.0 18 584.0 19 1225.0 20 2456.0 21 4708.0 22 8155.0 23 13291.0 24 20465.0 25 29478.0 26 40378.0 27 54067.0 28 69553.0 29 89248.0 30 112427.0 31 141270.0 32 176453.0 33 222688.0 34 287632.0 35 378968.0 36 534434.0 37 848043.0 38 1515153.0 39 1071918.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.59554365251906 18.53203194258089 12.67852998684916 26.193894418050885 2 18.78713511754397 21.39052125874611 34.07995248269896 25.742391141010966 3 18.979996318831844 22.059017839438827 30.409027575861852 28.551958265867476 4 15.00611305098596 15.498767164335705 32.92714221312897 36.56797757154937 5 14.832920313379446 36.93589876965401 33.6475130330247 14.583667883941837 6 36.79715251862146 34.771194058914695 13.829864232471994 14.601789189991846 7 30.43091896717447 30.516901807951502 19.940354405798104 19.11182481907592 8 28.54023899139549 34.671678034718575 18.448325379698268 18.339757594187667 9 27.070937177397624 13.575152292772016 17.944556628192235 41.40935390163812 10 15.681847484046049 27.825114280709524 33.32933206359707 23.16370617164736 11 37.50713782062397 21.019114510115656 20.700986890951175 20.772760778309205 12 21.849600273153346 25.035375670323827 29.56991685361488 23.545107202907943 13 32.18006069481604 19.372440854564516 23.381606429773715 25.065892020845727 14 22.733649700393812 20.02182025762842 25.39412062316664 31.850409418811125 15 25.894635008620515 27.903965969645476 21.337259912701185 24.86413910903282 16 25.192918997406288 25.786102789952007 23.671227224994954 25.349750987646747 17 24.62609023485675 26.095801067538765 25.012595107958703 24.26551358964578 18 24.502531025400952 25.221461388191628 25.627545807869694 24.648461778537722 19 25.54504851761848 25.272108571342194 25.48975986157385 23.693083049465475 20 25.0739834774235 25.212658594771852 25.334386111859498 24.37897181594515 21 24.814950166408362 25.35074685922555 25.309613806336767 24.52468916802932 22 25.361665879750284 24.952184826651656 24.83600573693163 24.850143556666428 23 24.921721826392908 24.915248661130686 25.03695839479728 25.12607111767912 24 24.80429789719938 24.927501438234177 25.0423645547965 25.225836109769944 25 25.08504476531664 24.695374443267777 25.14047568872967 25.079105102685915 26 24.689292513268654 24.985688791909965 25.43667634973943 24.888342345081952 27 25.081310246896127 25.281106982393524 25.104126376103352 24.533456394607 28 24.87930836718852 25.34795486212069 25.179279113460893 24.593457657229894 29 24.605763784596533 25.579068202087242 25.292701772918164 24.522466240398064 30 24.848916500613974 25.484798287100887 25.090504275579008 24.57578093670614 31 24.75574915773272 24.865650699822076 25.254005048713235 25.124595093731966 32 24.399316049626414 25.309720506863066 25.247691934240468 25.043271509270053 33 24.654099123010592 24.870718974821344 25.239298159504838 25.23588374266323 34 24.736934298261758 24.779098789571446 25.684755073387734 24.799211838779062 35 24.630447173014012 24.87075454166344 25.552713172091057 24.946085113231486 36 24.39478127725865 24.494457352244222 25.957890637295566 25.15287073320156 37 24.164308140449904 24.206081396496486 26.214736587521553 25.414873875532056 38 23.881178293911933 24.260623148857015 26.660709220614898 25.19748933661615 39 23.680030018414733 24.060381827833368 27.09425124239425 25.16533691135765 40 23.936840401798616 23.912832783381038 27.326040352360703 24.824286462459643 41 23.465348559498437 23.828432667077465 27.620836123107512 25.08538265031659 42 23.14220601559784 24.029705426522018 27.548688783907426 25.279399773972717 43 23.27819583636763 23.311344133204937 27.45971832839399 25.950741702033447 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 874.0 1 935.5 2 997.0 3 2137.0 4 3277.0 5 3277.0 6 3699.5 7 4122.0 8 4175.0 9 4228.0 10 6328.0 11 8428.0 12 8428.0 13 16915.0 14 25402.0 15 41145.5 16 56889.0 17 42404.5 18 27920.0 19 27920.0 20 33406.0 21 38892.0 22 33800.5 23 28709.0 24 35509.5 25 42310.0 26 42310.0 27 52385.5 28 62461.0 29 72708.5 30 82956.0 31 96530.0 32 110104.0 33 110104.0 34 126899.5 35 143695.0 36 166022.5 37 188350.0 38 215210.5 39 242071.0 40 242071.0 41 270167.5 42 298264.0 43 326556.0 44 354848.0 45 384732.5 46 414617.0 47 414617.0 48 443936.0 49 473255.0 50 488400.5 51 503546.0 52 502672.0 53 501798.0 54 501798.0 55 478438.5 56 455079.0 57 427996.0 58 400913.0 59 370251.0 60 339589.0 61 339589.0 62 299409.0 63 259229.0 64 221351.5 65 183474.0 66 154800.0 67 126126.0 68 126126.0 69 104534.5 70 82943.0 71 69840.5 72 56738.0 73 46865.0 74 36992.0 75 36992.0 76 30477.5 77 23963.0 78 20088.0 79 16213.0 80 12948.0 81 9683.0 82 9683.0 83 7843.5 84 6004.0 85 4840.5 86 3677.0 87 3033.0 88 2389.0 89 2389.0 90 1826.5 91 1264.0 92 904.5 93 545.0 94 407.0 95 269.0 96 269.0 97 179.0 98 89.0 99 56.0 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5623215.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.56104659447848 #Duplication Level Percentage of deduplicated Percentage of total 1 81.74999428469071 47.056152301194324 2 9.58743216799165 11.037252594863386 3 3.171282398150572 5.476270016525836 4 1.5155648163770632 3.4894998804972945 5 0.8835164878393374 2.542806686175504 6 0.5904284522775489 2.039140779135228 7 0.4016684039215247 1.6184317599559679 8 0.30436107874697693 1.4015473788240378 9 0.23368262968880746 1.2105915062253936 >10 1.4288120749291022 15.170292385116612 >50 0.10060779170991697 3.9035412549029687 >100 0.031042552015065956 2.953929257692022 >500 0.001050646185046454 0.37402722294941293 >1k 4.3261203736716006E-4 0.46411249399020477 >5k 3.0900859810526825E-5 0.16694745213174828 >10k+ 9.270257943158047E-5 1.0954570298199566 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36684 0.6523670178003153 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12479 0.22191931128366957 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 12425 0.22095900654696643 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9386 0.16691518997584123 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.335026315017299E-5 2 0.0 0.0 0.0 0.0 5.335026315017299E-5 3 0.0 0.0 0.0 1.7783421050057662E-5 5.335026315017299E-5 4 0.0 0.0 0.0 1.7783421050057662E-5 5.335026315017299E-5 5 0.0 1.7783421050057662E-5 0.0 1.7783421050057662E-5 5.335026315017299E-5 6 0.0 1.7783421050057662E-5 0.0 1.7783421050057662E-5 1.422673684004613E-4 7 0.0 1.7783421050057662E-5 0.0 1.7783421050057662E-5 1.422673684004613E-4 8 0.0 1.7783421050057662E-5 0.0 1.7783421050057662E-5 1.6005078945051897E-4 9 0.0 1.7783421050057662E-5 0.0 1.7783421050057662E-5 2.1340105260069195E-4 10 0.0 1.7783421050057662E-5 0.0 1.7783421050057662E-5 2.1340105260069195E-4 11 1.7783421050057662E-5 1.7783421050057662E-5 0.0 1.7783421050057662E-5 2.1340105260069195E-4 12 1.7783421050057662E-5 1.7783421050057662E-5 0.0 3.5566842100115325E-5 2.845347368009226E-4 13 1.7783421050057662E-5 1.7783421050057662E-5 0.0 3.5566842100115325E-5 3.0231815785098027E-4 14 1.7783421050057662E-5 1.7783421050057662E-5 0.0 5.335026315017299E-5 3.2010157890103794E-4 15 1.7783421050057662E-5 3.5566842100115325E-5 0.0 1.0670052630034597E-4 3.556684210011533E-4 16 1.7783421050057662E-5 3.5566842100115325E-5 0.0 3.0231815785098027E-4 4.0901868415132623E-4 17 1.7783421050057662E-5 3.5566842100115325E-5 0.0 4.979357894016145E-4 4.0901868415132623E-4 18 1.7783421050057662E-5 3.5566842100115325E-5 0.0 5.868528946519029E-4 4.979357894016145E-4 19 1.7783421050057662E-5 3.5566842100115325E-5 0.0 7.646871051524795E-4 5.157192104516722E-4 20 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.001209272631403921 5.335026315017299E-4 21 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.0019206094734062276 5.512860525517876E-4 22 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.0030231815785098028 5.868528946519029E-4 23 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.0037523018415621667 6.402031578020759E-4 24 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.005086058420316492 6.402031578020759E-4 25 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.005957446051769317 6.402031578020759E-4 26 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.006882183946372316 6.579865788521335E-4 27 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.011612573945687654 6.579865788521335E-4 28 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.03590472710006642 6.579865788521335E-4 29 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.09160240182884702 6.579865788521335E-4 30 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.16858683155454665 6.579865788521335E-4 31 1.7783421050057662E-5 3.5566842100115325E-5 0.0 0.4509164241452621 6.579865788521335E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 3295 0.0 18.584217 37 AACGCAG 15045 0.0 15.604187 5 CTATACT 640 0.0 14.7421875 4 TCTTATA 5330 0.0 14.16135 37 GAGTACT 10805 0.0 13.885701 11 ACGCAGA 17355 0.0 13.537885 6 CTCTTAT 8220 0.0 13.526155 37 AGTACTT 11140 0.0 13.484739 12 ACTATAC 470 0.0 13.382979 3 GTATACG 210 2.046363E-9 13.214285 1 CGCAGAG 17845 0.0 13.145419 7 TAGTACG 240 8.185452E-11 13.104166 2 GTACTTT 11525 0.0 13.018222 13 AGAGTAC 17960 0.0 13.009745 10 TAGACAG 975 0.0 12.902564 5 GTATAGA 635 0.0 12.818897 1 CAGAGTA 18400 0.0 12.809239 9 TCTATAC 560 0.0 12.553571 3 TACTTTT 12005 0.0 12.405248 14 GCAGAGT 19230 0.0 12.400676 8 >>END_MODULE