##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727269.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3327293 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.2195201925409 31.0 31.0 34.0 30.0 34.0 2 31.4605155001378 31.0 31.0 34.0 30.0 34.0 3 31.61113012890659 31.0 31.0 34.0 30.0 34.0 4 35.42413517535125 37.0 35.0 37.0 33.0 37.0 5 35.24167754387726 37.0 35.0 37.0 33.0 37.0 6 35.2447494104066 37.0 35.0 37.0 32.0 37.0 7 35.14173924568711 37.0 35.0 37.0 32.0 37.0 8 35.14975356844137 37.0 35.0 37.0 32.0 37.0 9 36.72032850728806 39.0 35.0 39.0 32.0 39.0 10 36.447852052704704 38.0 35.0 39.0 32.0 39.0 11 36.61321590854788 39.0 35.0 39.0 32.0 39.0 12 36.46230494278682 38.0 35.0 39.0 32.0 39.0 13 36.52292118548021 38.0 35.0 39.0 32.0 39.0 14 37.531869600903796 39.0 36.0 41.0 32.0 41.0 15 37.52966901321886 39.0 36.0 41.0 32.0 41.0 16 37.48068985809185 39.0 36.0 41.0 32.0 41.0 17 37.46143696993322 39.0 36.0 41.0 32.0 41.0 18 37.40055624797696 39.0 36.0 41.0 32.0 41.0 19 37.41333179855216 39.0 36.0 41.0 32.0 41.0 20 37.334777850943695 39.0 36.0 41.0 31.0 41.0 21 37.23299961860888 39.0 36.0 41.0 31.0 41.0 22 37.16182223807762 39.0 36.0 40.0 31.0 41.0 23 37.049765379844814 39.0 36.0 40.0 31.0 41.0 24 36.906629503322975 39.0 36.0 40.0 31.0 41.0 25 36.774394981145335 39.0 35.0 40.0 30.0 41.0 26 36.54137222060095 38.0 35.0 40.0 30.0 41.0 27 36.37152423907362 38.0 35.0 40.0 30.0 41.0 28 36.140391002535694 38.0 35.0 40.0 29.0 41.0 29 36.06650841990771 38.0 35.0 40.0 29.0 41.0 30 35.96728902444119 38.0 34.0 40.0 29.0 41.0 31 36.096448374098706 38.0 35.0 40.0 30.0 41.0 32 36.066010116932894 38.0 35.0 40.0 29.0 41.0 33 36.04116168909681 38.0 35.0 40.0 29.0 41.0 34 36.07272127822828 38.0 35.0 40.0 29.0 41.0 35 35.85524148309151 38.0 34.0 40.0 28.0 41.0 36 35.81050661904437 38.0 34.0 40.0 28.0 41.0 37 35.72073574524396 38.0 34.0 40.0 27.0 41.0 38 35.61011909681534 38.0 34.0 40.0 27.0 41.0 39 35.52341347756269 38.0 34.0 40.0 27.0 41.0 40 35.31549731268031 38.0 34.0 40.0 26.0 41.0 41 35.22571682145215 38.0 34.0 40.0 26.0 41.0 42 34.99797462982671 38.0 33.0 40.0 25.0 41.0 43 34.62228995162133 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 9.0 15 13.0 16 71.0 17 122.0 18 239.0 19 567.0 20 1162.0 21 2363.0 22 4409.0 23 7656.0 24 12517.0 25 19171.0 26 28904.0 27 41758.0 28 57872.0 29 77164.0 30 99398.0 31 123506.0 32 153265.0 33 185576.0 34 228810.0 35 277652.0 36 343493.0 37 441873.0 38 590079.0 39 629644.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.8080725081921 19.069916595863365 12.59236863119659 25.52964226474795 2 18.449291961964278 22.569638441820423 33.446438290826805 25.534631305388494 3 20.25538478276485 24.057214077630075 30.33577145144717 25.35162968815791 4 14.663662021949975 15.562951624639007 34.03162871439335 35.74175763901766 5 14.305983873376945 37.97711833613691 33.094320217666436 14.622577572819706 6 34.6466632184181 34.85638325209111 15.6060797771642 14.890873752326591 7 28.343641512785318 31.98101279328271 20.89115686535571 18.784188828576262 8 28.73218559351401 32.58531785448411 19.810458531905667 18.872038020096216 9 28.19048397601293 13.008532762218417 19.14087517991352 39.66010808185513 10 17.217239359443248 26.87289637552208 32.0060481598705 23.903816105164168 11 36.902310677178114 21.942522044196288 20.34137059766002 20.813796680965577 12 21.81854738972492 25.649589621352852 28.807712455741047 23.724150533181177 13 30.803388820882322 19.009296746634575 24.78988174470959 25.397432687773513 14 23.09246585738016 20.757324347450016 24.994402356510232 31.155807438659593 15 26.043002524875327 27.48312216567642 22.236665060756597 24.237210248691653 16 24.637235133785936 25.88025761482382 24.732627995190086 24.74987925620016 17 24.048708664971798 25.909861259588503 25.31962168645803 24.72180838898167 18 23.913253206134836 24.472055812337537 27.145881051052612 24.468809930475015 19 24.284335644621617 25.27357825114891 27.291645190249252 23.150440913980226 20 24.114678208381406 24.20348914267544 26.834186228865324 24.847646420077822 21 24.945744183034076 25.20385190002804 26.967748256615813 22.882655660322072 22 25.31273921473101 24.451498560541555 26.022325055232585 24.213437169494842 23 23.700708053062954 24.842627324975588 26.801426865623196 24.65523775633826 24 23.57144381333414 25.44515917293728 26.73103931634515 24.252357697383427 25 24.428777387503896 24.417506964370137 26.11320974738323 25.040505900742737 26 23.733407307381707 25.685354430763986 26.779998034438208 23.801240227416102 27 25.03957421243034 25.122704853464967 25.91977923194621 23.917941702158483 28 23.4615647013954 26.106086839962693 26.516089806338066 23.91625865230384 29 23.650366829732157 25.88025761482382 26.911877012334052 23.55749854310997 30 23.917731320926652 26.09355412943796 26.660471440296963 23.32824310933843 31 24.102776641552158 25.921312009492404 26.096259030990055 23.879652317965387 32 23.507998844706492 25.85846813009855 25.99608751017719 24.637445515017763 33 22.95767159670038 25.50851397817986 26.66873641726172 24.865078007858042 34 24.070107441695097 25.790454883294018 26.897841578724808 23.24159609628608 35 24.045793382187863 25.456609922841178 27.11116814780063 23.386428547170325 36 22.8623688986813 26.15071771557239 26.934928784450303 24.05198460129601 37 23.370229192319403 25.87568933664694 27.14885644275993 23.605225028273736 38 23.281538475872125 25.142210199101793 27.196612982385382 24.3796383426407 39 23.249079657246895 25.090997396381987 27.43572627959125 24.22419666677987 40 23.68324641082105 24.880646219013475 27.774710552993078 23.6613968171724 41 22.446324985506237 25.400528297327586 28.214527545364952 23.93861917180122 42 23.132798944968176 25.240698670060013 28.10155282387214 23.52494956109967 43 22.39706572279628 24.281841124301344 28.005889472312777 25.315203680589597 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 523.0 1 574.5 2 626.0 3 1353.0 4 2080.0 5 2080.0 6 3446.0 7 4812.0 8 4620.5 9 4429.0 10 6083.5 11 7738.0 12 7738.0 13 14537.5 14 21337.0 15 35311.0 16 49285.0 17 42959.0 18 36633.0 19 36633.0 20 37611.0 21 38589.0 22 31712.5 23 24836.0 24 29174.5 25 33513.0 26 33513.0 27 38409.5 28 43306.0 29 47621.0 30 51936.0 31 57973.5 32 64011.0 33 64011.0 34 73423.0 35 82835.0 36 97712.5 37 112590.0 38 128208.5 39 143827.0 40 143827.0 41 160656.0 42 177485.0 43 189188.0 44 200891.0 45 222822.5 46 244754.0 47 244754.0 48 270812.5 49 296871.0 50 299042.5 51 301214.0 52 290197.5 53 279181.0 54 279181.0 55 267144.0 56 255107.0 57 242757.5 58 230408.0 59 212636.5 60 194865.0 61 194865.0 62 166064.0 63 137263.0 64 121047.5 65 104832.0 66 87613.0 67 70394.0 68 70394.0 69 57747.0 70 45100.0 71 37668.5 72 30237.0 73 22381.5 74 14526.0 75 14526.0 76 11243.5 77 7961.0 78 6845.5 79 5730.0 80 4518.0 81 3306.0 82 3306.0 83 2651.5 84 1997.0 85 1707.0 86 1417.0 87 952.0 88 487.0 89 487.0 90 332.0 91 177.0 92 130.5 93 84.0 94 88.0 95 92.0 96 92.0 97 49.0 98 6.0 99 4.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3327293.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.38894878116417 #Duplication Level Percentage of deduplicated Percentage of total 1 81.30633864586974 40.1563459496485 2 9.594307047434677 9.477054787130273 3 3.191589773544315 4.728877915682025 4 1.6051007790136624 3.1709696065324993 5 0.9597195761556527 2.369977049551606 6 0.6242920883884508 1.8499877986741928 7 0.44451583268315553 1.5367918784963437 8 0.331424976912576 1.3094984967626986 9 0.2618350984166626 1.1638584238330465 >10 1.4904410216805764 13.254527963134095 >50 0.09918404792239363 3.3640466801568616 >100 0.07386304658177639 7.466852296049543 >500 0.012202151155908121 4.164893820251091 >1k 0.004941871217413632 3.999345475159571 >5k 6.101075577053867E-5 0.2403373856460557 >10k+ 1.8303226731161598E-4 1.746634473291577 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 25664 0.7713177048128915 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16573 0.4980925935888424 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 15728 0.47269657346076827 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7976 0.2397143864396673 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT 4165 0.1251768329389687 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.0108923380057E-5 2 0.0 0.0 0.0 0.0 6.0108923380057E-5 3 0.0 0.0 0.0 0.0 6.0108923380057E-5 4 0.0 0.0 0.0 0.0 9.01633850700855E-5 5 0.0 0.0 0.0 0.0 9.01633850700855E-5 6 0.0 0.0 0.0 0.0 1.20217846760114E-4 7 0.0 0.0 0.0 0.0 1.20217846760114E-4 8 0.0 0.0 0.0 0.0 1.20217846760114E-4 9 0.0 0.0 0.0 3.00544616900285E-5 1.502723084501425E-4 10 0.0 0.0 0.0 3.00544616900285E-5 1.502723084501425E-4 11 0.0 0.0 0.0 9.01633850700855E-5 1.502723084501425E-4 12 0.0 0.0 0.0 9.01633850700855E-5 1.80326770140171E-4 13 0.0 0.0 0.0 1.80326770140171E-4 1.80326770140171E-4 14 0.0 0.0 0.0 2.704901552102565E-4 3.305990785903135E-4 15 0.0 0.0 0.0 4.80871387040456E-4 4.508169253504275E-4 16 0.0 0.0 0.0 7.81416003940741E-4 4.508169253504275E-4 17 0.0 0.0 0.0 0.001442614161121368 4.80871387040456E-4 18 0.0 0.0 0.0 0.001502723084501425 4.80871387040456E-4 19 0.0 0.0 0.0 0.001683049854641596 4.80871387040456E-4 20 0.0 0.0 0.0 0.0022540846267521376 5.109258487304845E-4 21 0.0 0.0 0.0 0.0038169166346336196 5.710347721105415E-4 22 0.0 0.0 0.0 0.005950783414625643 5.710347721105415E-4 23 0.0 0.0 0.0 0.008866066198558408 5.710347721105415E-4 24 0.0 0.0 0.0 0.01280320067995214 5.710347721105415E-4 25 0.0 0.0 0.0 0.014907012998254136 5.710347721105415E-4 26 0.0 0.0 0.0 0.01902447424978804 6.0108923380057E-4 27 0.0 0.0 0.0 0.03372110601621198 6.0108923380057E-4 28 0.0 0.0 0.0 0.05953788860794646 6.0108923380057E-4 29 0.0 3.00544616900285E-5 0.0 0.09346937585598863 6.0108923380057E-4 30 0.0 3.00544616900285E-5 0.0 0.1570045078687089 6.0108923380057E-4 31 0.0 3.00544616900285E-5 0.0 0.35001426084207193 6.311436954905985E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGACGG 1015 0.0 20.778326 5 CAAGACG 1095 0.0 19.429224 4 TAGTACT 265 0.0 18.150944 4 ACGGACC 1190 0.0 17.411766 8 GACGGAC 1230 0.0 17.146341 7 GCGCAAG 1250 0.0 16.872 1 CGCAAGA 1285 0.0 16.556421 2 CGGACCA 1275 0.0 16.105883 9 AGAGCGA 1310 0.0 15.816794 15 AGACGGA 1345 0.0 15.680297 6 TATTCCG 95 7.0661066E-5 15.578948 5 CAGAGCG 1340 0.0 15.462687 14 CGAACGT 385 0.0 15.376625 4 AGCGAAA 1335 0.0 15.104869 17 TATACCG 125 2.9626408E-6 14.800001 5 GAGCGAA 1375 0.0 14.799999 16 CGAAAGC 1390 0.0 14.773381 19 GTAGTAC 215 1.2732926E-11 14.627907 3 GCAAGAC 1595 0.0 14.498432 3 CTTATAC 1560 0.0 14.467949 37 >>END_MODULE