##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727262.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5779435 Sequences flagged as poor quality 0 Sequence length 43 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.573197033966125 31.0 31.0 34.0 30.0 34.0 2 31.7926553374162 31.0 31.0 34.0 30.0 34.0 3 31.962872841376363 31.0 31.0 34.0 30.0 34.0 4 35.6698812254139 37.0 35.0 37.0 35.0 37.0 5 35.47336115035466 37.0 35.0 37.0 33.0 37.0 6 35.47869488972538 37.0 35.0 37.0 33.0 37.0 7 35.38690477529378 37.0 35.0 37.0 33.0 37.0 8 35.348640135238135 37.0 35.0 37.0 33.0 37.0 9 36.8800554033396 39.0 37.0 39.0 33.0 39.0 10 36.68012340306622 39.0 35.0 39.0 32.0 39.0 11 36.74633489259763 39.0 35.0 39.0 32.0 39.0 12 36.58085920163476 38.0 35.0 39.0 32.0 39.0 13 36.57685673426555 38.0 35.0 39.0 32.0 39.0 14 37.557207062628095 39.0 36.0 41.0 32.0 41.0 15 37.492212820111305 39.0 36.0 41.0 32.0 41.0 16 37.40725209298141 39.0 36.0 41.0 32.0 41.0 17 37.738123190242646 39.0 37.0 41.0 32.0 41.0 18 37.76669743668715 40.0 37.0 41.0 32.0 41.0 19 37.85806363424798 40.0 37.0 41.0 32.0 41.0 20 37.826129024723 40.0 37.0 41.0 32.0 41.0 21 37.77923689772443 40.0 37.0 41.0 32.0 41.0 22 37.72707539750858 40.0 37.0 41.0 32.0 41.0 23 37.60644959239095 40.0 37.0 41.0 32.0 41.0 24 37.49705550802111 39.0 37.0 41.0 32.0 41.0 25 37.411835586004514 39.0 36.0 41.0 31.0 41.0 26 37.142770703364604 39.0 36.0 41.0 31.0 41.0 27 36.96304794499808 39.0 36.0 41.0 30.0 41.0 28 36.769825424111524 39.0 36.0 41.0 30.0 41.0 29 36.60777463540986 39.0 36.0 40.0 30.0 41.0 30 36.46841810661423 39.0 36.0 40.0 30.0 41.0 31 36.3164449466081 39.0 35.0 40.0 29.0 41.0 32 36.17911543256391 39.0 35.0 40.0 29.0 41.0 33 36.01376933904439 39.0 35.0 40.0 27.0 41.0 34 35.898947561483084 38.0 35.0 40.0 27.0 41.0 35 35.73720822191097 38.0 35.0 40.0 27.0 41.0 36 35.639924490888816 38.0 35.0 40.0 26.0 41.0 37 35.58035378890843 38.0 35.0 40.0 26.0 41.0 38 35.472037491554104 38.0 34.0 40.0 25.0 41.0 39 35.332018268221724 38.0 34.0 40.0 25.0 41.0 40 35.25044835697607 38.0 34.0 40.0 25.0 41.0 41 35.04903593517359 38.0 34.0 40.0 24.0 41.0 42 34.888143218151946 38.0 33.0 40.0 24.0 41.0 43 34.61187347898194 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 6.0 11 17.0 12 28.0 13 45.0 14 65.0 15 130.0 16 227.0 17 445.0 18 847.0 19 1709.0 20 3550.0 21 6513.0 22 11387.0 23 18755.0 24 28287.0 25 39632.0 26 54037.0 27 71775.0 28 93227.0 29 117807.0 30 147845.0 31 184294.0 32 227077.0 33 279781.0 34 346538.0 35 435137.0 36 555559.0 37 733851.0 38 1141504.0 39 1279359.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.22002150729267 20.80127209666689 12.762164467633946 26.216541928406496 2 19.212535481409514 22.70097336504347 33.98927403803313 24.097217115513885 3 18.865494637451587 25.090411086896903 30.341183870049584 25.70291040560193 4 14.763623087723973 16.409579829170152 34.504151357355866 34.32264572575001 5 13.119881095643432 39.34097364188714 34.13935791301399 13.399787349455439 6 34.28784993688829 37.406909152884324 14.834996846577564 13.470244063649819 7 28.630065049611254 32.33201861427631 20.852453570288446 18.185462765823996 8 27.17779506128194 35.983655841790764 19.13688794838942 17.701661148537877 9 28.147509228843305 14.11250407695562 17.919104549147104 39.82088214505397 10 15.981856357931182 27.88753571932204 33.475106130616574 22.6555017921302 11 37.25834791809234 22.206201817305672 20.573671993888677 19.961778270713314 12 21.309747406104577 25.619165195213718 29.670858829626077 23.400228569055624 13 30.365078939377295 20.477070855542106 24.245709139388193 24.91214106569241 14 22.654238692882608 20.75284175702296 24.534682023415783 32.058237526678646 15 25.168134947447285 28.615790297840533 21.493467787076074 24.72260696763611 16 24.873348346334893 26.84047835125752 23.691589229743045 24.594584072664542 17 23.990874540504393 26.80855481547937 24.33810571448593 24.862464929530308 18 24.257301968098957 26.266045037274406 25.174709984626524 24.301943010000112 19 25.26634523962982 25.894122868411877 25.089840096826073 23.749691795132225 20 24.686703804091575 25.139671957552945 25.046046888666453 25.12757734968903 21 24.92852675045225 25.780824596175922 25.39253404528297 23.898114608088854 22 25.355263966114332 25.0634361317326 24.65542046930193 24.925879432851136 23 24.524058147552484 25.41452581437459 25.162078992150615 24.89933704592231 24 24.417248398848677 25.379210943630305 25.094096568263165 25.10944408925786 25 25.016424615901034 24.95423860636896 24.80988193482581 25.21945484290419 26 24.74504860769262 25.47219581152829 25.116399786484315 24.66635579429477 27 25.512788014745386 25.58589204654088 24.456196842770964 24.44512309594277 28 24.652496308030113 26.02678289486775 24.436298703939052 24.884422093163085 29 24.811992867814933 25.980307763648174 24.98365324638135 24.224046122155542 30 25.476798337553756 25.562896719142962 24.569339390442146 24.390965552861136 31 25.151835776334536 25.26805820984231 25.01908923623157 24.561016777591583 32 24.803497227670178 25.629806373806435 24.508745232016622 25.057951166506758 33 24.599515350548973 25.005437382719936 24.893938594343563 25.501108672387524 34 25.20331139635622 25.365247640989132 25.3453321994278 24.086108763226854 35 25.16562605168152 25.088698116684416 25.19611346091789 24.549562370716167 36 24.69011244178713 25.302473338656807 25.406722283406598 24.60069193614947 37 24.78740568931046 25.231601358956368 25.65494723965232 24.32604571208085 38 25.127040965077036 24.53636038816943 25.447712449400328 24.8888861973532 39 24.593494000711143 25.070114985288356 25.670658117964816 24.665732896035685 40 25.208277279699487 24.478378941886188 25.76262212482708 24.550721653587246 41 24.11813611538152 25.18562800688995 26.014446048791967 24.681789828936566 42 24.458913371289754 24.9896918989486 26.02932639609235 24.522068333669296 43 24.029303902544108 24.41757715070764 25.880799766759203 25.672319179989046 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 475.0 1 458.0 2 441.0 3 466.0 4 491.0 5 491.0 6 674.0 7 857.0 8 1091.0 9 1325.0 10 1925.0 11 2525.0 12 2525.0 13 4856.0 14 7187.0 15 10672.0 16 14157.0 17 15152.0 18 16147.0 19 16147.0 20 20968.0 21 25789.0 22 29375.5 23 32962.0 24 41411.5 25 49861.0 26 49861.0 27 61906.0 28 73951.0 29 86822.0 30 99693.0 31 117489.5 32 135286.0 33 135286.0 34 156354.0 35 177422.0 36 204548.5 37 231675.0 38 259232.5 39 286790.0 40 286790.0 41 314443.0 42 342096.0 43 366485.5 44 390875.0 45 426123.0 46 461371.0 47 461371.0 48 496974.0 49 532577.0 50 538493.0 51 544409.0 52 529775.0 53 515141.0 54 515141.0 55 487393.5 56 459646.0 57 427902.5 58 396159.0 59 358626.5 60 321094.0 61 321094.0 62 275380.0 63 229666.0 64 196524.0 65 163382.0 66 135306.0 67 107230.0 68 107230.0 69 85087.5 70 62945.0 71 51500.0 72 40055.0 73 31657.0 74 23259.0 75 23259.0 76 18083.5 77 12908.0 78 10478.5 79 8049.0 80 6272.5 81 4496.0 82 4496.0 83 3669.0 84 2842.0 85 2273.0 86 1704.0 87 1433.0 88 1162.0 89 1162.0 90 865.0 91 568.0 92 450.0 93 332.0 94 307.5 95 283.0 96 283.0 97 169.0 98 55.0 99 76.0 100 97.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5779435.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.09226054873976 #Duplication Level Percentage of deduplicated Percentage of total 1 80.3447357985863 42.65683646738202 2 9.84883659019397 10.457939966970798 3 3.502886718764411 5.579285230360806 4 1.7251160995233563 3.6636125373087878 5 1.0274047016598915 2.72736190547636 6 0.65483933310991 2.0860140294620595 7 0.47252153337329583 1.7561065455321534 8 0.3514324482505233 1.492667448623863 9 0.25433886242455356 1.2153082636363028 >10 1.6460682177203665 16.066423183043486 >50 0.11711230059598106 4.2277048997180735 >100 0.048906617518147094 4.798523604361371 >500 0.004194920799002871 1.5428930386620445 >1k 0.0015403122771356953 1.5384480053683889 >5k 6.554520327340371E-5 0.19087487409365453 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 5894 0.10198228719589372 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.730272941905221E-5 2 0.0 0.0 0.0 0.0 1.730272941905221E-5 3 0.0 0.0 0.0 0.0 1.730272941905221E-5 4 0.0 0.0 0.0 1.730272941905221E-5 1.730272941905221E-5 5 0.0 0.0 0.0 1.730272941905221E-5 1.730272941905221E-5 6 0.0 0.0 0.0 1.730272941905221E-5 3.460545883810442E-5 7 0.0 0.0 0.0 1.730272941905221E-5 3.460545883810442E-5 8 0.0 0.0 0.0 1.730272941905221E-5 3.460545883810442E-5 9 0.0 0.0 0.0 1.730272941905221E-5 1.0381637651431325E-4 10 0.0 0.0 0.0 3.460545883810442E-5 1.0381637651431325E-4 11 0.0 0.0 0.0 3.460545883810442E-5 1.2111910593336546E-4 12 0.0 0.0 0.0 5.190818825715663E-5 1.2111910593336546E-4 13 0.0 0.0 0.0 6.921091767620884E-5 1.3842183535241767E-4 14 0.0 0.0 0.0 6.921091767620884E-5 1.9033002360957429E-4 15 0.0 0.0 0.0 6.921091767620884E-5 1.9033002360957429E-4 16 0.0 0.0 0.0 1.2111910593336546E-4 3.633573178000964E-4 17 0.0 0.0 0.0 1.5572456477146987E-4 3.633573178000964E-4 18 0.0 0.0 0.0 1.9033002360957429E-4 3.9796277663820077E-4 19 0.0 0.0 0.0 2.076327530286265E-4 4.325682354763052E-4 20 0.0 1.730272941905221E-5 0.0 2.4223821186673093E-4 4.325682354763052E-4 21 0.0 1.730272941905221E-5 0.0 3.9796277663820077E-4 4.325682354763052E-4 22 0.0 1.730272941905221E-5 0.0 5.190818825715663E-4 4.325682354763052E-4 23 0.0 1.730272941905221E-5 0.0 7.44017365019245E-4 5.709900708287228E-4 24 0.0 1.730272941905221E-5 0.0 0.0011073746828193414 6.055955296668273E-4 25 0.0 1.730272941905221E-5 0.0 0.0012284937887527068 6.055955296668273E-4 26 0.0 1.730272941905221E-5 0.0 0.0015572456477146988 6.055955296668273E-4 27 0.0 1.730272941905221E-5 0.0 0.004464104190115469 6.055955296668273E-4 28 0.0 1.730272941905221E-5 0.0 0.01010479398072649 6.055955296668273E-4 29 0.0 1.730272941905221E-5 0.0 0.018756158690252593 6.228982590858795E-4 30 0.0 1.730272941905221E-5 0.0 0.034640064296942524 6.228982590858795E-4 31 0.0 1.730272941905221E-5 0.0 0.11687993722569767 6.228982590858795E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3275 0.0 22.087023 1 AAGACGG 1060 0.0 16.40566 5 TATACTG 1045 0.0 15.047847 5 CGAACGT 260 0.0 14.230769 4 TCGTTAC 1370 0.0 14.178832 23 GTATCAA 5125 0.0 14.078049 2 TATAGCG 135 6.577464E-6 13.703704 5 TACTTAC 1055 0.0 13.677725 31 CAAGACG 1250 0.0 13.616 4 CTATACT 790 0.0 13.582278 4 TACGGAT 2570 0.0 13.245136 27 CGTTACG 1205 0.0 13.20332 24 AATTAAC 945 0.0 13.116403 2 TTAGAGT 925 0.0 13.0 4 AAATCGC 810 0.0 12.790123 14 GGGTAAG 4385 0.0 12.656784 1 ACGGATG 2705 0.0 12.652495 28 CAAATCG 835 0.0 12.628742 13 GTTACGG 1930 0.0 12.556995 25 CTTATAC 1330 0.0 12.518797 37 >>END_MODULE