##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727248.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4315260 Sequences flagged as poor quality 0 Sequence length 43 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.975981980228305 31.0 30.0 33.0 26.0 34.0 2 30.31546511681799 31.0 30.0 34.0 26.0 34.0 3 31.11900835639104 31.0 31.0 34.0 28.0 34.0 4 35.11403971023762 35.0 35.0 37.0 33.0 37.0 5 34.961963589679414 35.0 35.0 37.0 32.0 37.0 6 34.99714130782386 35.0 35.0 37.0 32.0 37.0 7 34.88105305358194 35.0 35.0 37.0 32.0 37.0 8 34.87129025829266 35.0 35.0 37.0 32.0 37.0 9 36.282861287616505 38.0 35.0 39.0 32.0 39.0 10 36.06857524227972 37.0 35.0 39.0 30.0 39.0 11 36.135006465427345 37.0 35.0 39.0 31.0 39.0 12 35.9165127941306 37.0 35.0 39.0 30.0 39.0 13 35.93709764880911 37.0 35.0 39.0 30.0 39.0 14 36.7472778001789 38.0 36.0 40.0 31.0 41.0 15 36.72254927860662 38.0 36.0 40.0 31.0 41.0 16 36.53489268317552 38.0 35.0 40.0 30.0 41.0 17 37.03766702353972 39.0 36.0 40.0 31.0 41.0 18 37.198781765177536 39.0 36.0 40.0 31.0 41.0 19 37.33365011609961 39.0 36.0 41.0 32.0 41.0 20 37.33815691290907 39.0 36.0 41.0 31.0 41.0 21 37.287193355672656 39.0 36.0 41.0 31.0 41.0 22 37.2333041346292 39.0 36.0 41.0 31.0 41.0 23 37.114022793528086 39.0 36.0 40.0 31.0 41.0 24 37.01029625097908 39.0 36.0 40.0 31.0 41.0 25 36.88823917909929 39.0 36.0 40.0 30.0 41.0 26 36.608675491163915 39.0 36.0 40.0 30.0 41.0 27 36.446550613404526 39.0 35.0 40.0 30.0 41.0 28 36.267668228565604 39.0 35.0 40.0 29.0 41.0 29 36.08078702094428 38.0 35.0 40.0 29.0 41.0 30 35.94601646250747 38.0 35.0 40.0 28.0 41.0 31 35.75018330297595 38.0 34.0 40.0 27.0 41.0 32 35.57934492939012 38.0 34.0 40.0 27.0 41.0 33 35.43419052386183 38.0 34.0 40.0 26.0 41.0 34 35.28783526369211 38.0 34.0 40.0 26.0 41.0 35 35.095962699814145 38.0 34.0 40.0 25.0 41.0 36 34.952457789333664 38.0 33.0 40.0 25.0 41.0 37 34.80552434847495 38.0 33.0 40.0 24.0 41.0 38 34.69421124103762 38.0 33.0 40.0 24.0 41.0 39 34.570566084083 38.0 33.0 40.0 24.0 41.0 40 34.46239600858349 38.0 33.0 40.0 23.0 41.0 41 34.32347784374522 38.0 33.0 40.0 23.0 41.0 42 34.16320777890556 38.0 33.0 40.0 22.0 41.0 43 33.827955673586295 37.0 32.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 11.0 12 9.0 13 17.0 14 47.0 15 97.0 16 197.0 17 419.0 18 870.0 19 1826.0 20 3661.0 21 6683.0 22 11934.0 23 18890.0 24 27766.0 25 38776.0 26 51930.0 27 68353.0 28 89215.0 29 113508.0 30 142657.0 31 176683.0 32 215125.0 33 259448.0 34 313602.0 35 376071.0 36 462222.0 37 578438.0 38 685056.0 39 671746.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.89766549408378 28.23266732479619 14.411391202384097 22.458275978735927 2 20.128126694567648 25.541311531634246 30.350060019558494 23.980501754239604 3 19.467865203950634 25.106413055065048 30.90680515194913 24.518916589035193 4 15.836473352706443 17.284381474117435 32.437257546474605 34.441887626701515 5 13.44176248939809 39.796489666903035 33.076871382025644 13.684876461673227 6 34.42471600784194 38.19517248091656 12.55778330853761 14.822328202703893 7 28.841089528788533 31.979903876012106 19.678211741586836 19.50079485361253 8 28.667635322089513 36.06331947553566 17.6351135273425 17.633931675032326 9 27.130138160852418 14.757627582115562 17.847059041633646 40.26517521539837 10 16.548991254292904 29.952378303972417 32.20867340554219 21.28995703619249 11 36.23053999063788 23.747445113388302 19.17108123264879 20.850933663325037 12 21.2353369206027 27.268090451096803 28.52724980650065 22.969322821799846 13 31.911101532700233 20.537209808910703 23.019655826068416 24.53203283232065 14 21.991930961286226 22.166520673146 25.103493184651676 30.738055180916096 15 25.393556819287827 29.64359042097116 21.428048367885133 23.53480439185588 16 23.898003828274543 27.18174571173 24.051667802171828 24.86858265782363 17 23.98849663751431 27.366554970036567 25.2108331827051 23.434115209744025 18 23.695304570292404 26.407771490014508 25.919342055866856 23.977581883826236 19 24.32738699406293 26.893976260990065 26.493050244944683 22.285586500002317 20 23.99303865815733 26.5943882871484 26.057966379777813 23.354606674916457 21 23.465654444923363 27.11440330362481 26.199325185504463 23.22061706594736 22 24.09254598795901 26.745456820678243 25.33379217011258 23.828205021250167 23 23.75300677131853 26.596497082446945 25.427158502616297 24.22333764361823 24 23.610744196178214 26.655357962208537 25.722482538711454 24.011415302901796 25 24.111548319220628 26.010089774428423 25.56643168661911 24.311930219731835 26 23.98949310122681 26.54567743310948 25.9691188943424 23.49571057132131 27 24.423835412002983 26.92658148060604 25.533362995508963 23.11622011188202 28 23.593387188720957 27.48782228649027 25.563581336929875 23.3552091878589 29 23.88247753321932 27.40284478803131 25.761275102774807 22.953402575974565 30 23.811589568183607 27.29091642218545 25.61706594735891 23.28042806227203 31 23.717806111335122 26.739292649805574 25.96302424419386 23.579876994665444 32 23.176981224769772 27.1004064645004 25.65609024716935 24.06652206356048 33 23.332035613149614 27.01598513183447 25.666935480133297 23.985043774882627 34 23.83921246923708 26.92287370865255 25.8181430551114 23.419770766998976 35 23.64687179914999 27.188744131292204 25.81306804225006 23.35131602730774 36 23.678364687179915 27.198847809865455 25.837006344924756 23.285781158029874 37 23.26967552360692 27.022265170580685 26.225256415604157 23.482802890208237 38 23.56203334213929 27.06641083040188 26.01903477426621 23.352521053192625 39 23.026538377757074 27.38115432210342 26.157149279533563 23.435158020605943 40 23.727678054161277 26.936013125512716 26.407053109198518 22.929255711127485 41 23.547294948624184 26.761029462882885 26.230910767833226 23.460764820659705 42 22.951479169273696 27.101681011109413 26.374725972479062 23.57211384713783 43 23.334538359218215 26.411525609117408 26.315587009820963 23.93834902184341 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1001.0 1 1014.5 2 1028.0 3 1034.5 4 1041.0 5 1041.0 6 1246.0 7 1451.0 8 2060.0 9 2669.0 10 4261.5 11 5854.0 12 5854.0 13 16721.0 14 27588.0 15 48310.5 16 69033.0 17 51780.5 18 34528.0 19 34528.0 20 41057.0 21 47586.0 22 41198.0 23 34810.0 24 40492.0 25 46174.0 26 46174.0 27 56821.0 28 67468.0 29 77236.5 30 87005.0 31 100785.5 32 114566.0 33 114566.0 34 127220.5 35 139875.0 36 157588.0 37 175301.0 38 194002.5 39 212704.0 40 212704.0 41 232426.5 42 252149.0 43 269670.5 44 287192.0 45 306254.0 46 325316.0 47 325316.0 48 344970.5 49 364625.0 50 374825.0 51 385025.0 52 377774.5 53 370524.0 54 370524.0 55 347611.0 56 324698.0 57 292894.5 58 261091.0 59 236402.5 60 211714.0 61 211714.0 62 184013.0 63 156312.0 64 131911.5 65 107511.0 66 89198.5 67 70886.0 68 70886.0 69 58450.5 70 46015.0 71 38122.0 72 30229.0 73 24976.0 74 19723.0 75 19723.0 76 16149.0 77 12575.0 78 10483.5 79 8392.0 80 6614.0 81 4836.0 82 4836.0 83 3866.5 84 2897.0 85 2316.0 86 1735.0 87 1404.5 88 1074.0 89 1074.0 90 799.0 91 524.0 92 405.0 93 286.0 94 216.0 95 146.0 96 146.0 97 108.5 98 71.0 99 51.5 100 32.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4315260.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.01459543065314 #Duplication Level Percentage of deduplicated Percentage of total 1 82.36789342635056 48.609079070312326 2 9.275809121204247 10.948162451596616 3 3.156635371431851 5.588626781014206 4 1.5035575457636559 3.5492736107979157 5 0.886240172927351 2.615055262984985 6 0.5735583436343628 2.030898816327446 7 0.38996792758151744 1.6109659634007443 8 0.29797097802345685 1.4067709374504274 9 0.21331227335780992 1.1329683761343639 >10 1.2365995993384387 13.255097541949018 >50 0.07040213289574392 2.8039194339476343 >100 0.025031379412509564 2.6710396118310715 >500 0.0015903834367196291 0.6201054623764463 >1k 0.001272306348298091 1.5092952084195956 >5k 3.975957338431251E-5 0.1625347911933672 >10k+ 1.1927872015293756E-4 1.4862066802638774 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 37208 0.8622423677831694 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 14853 0.3441971051570473 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11279 0.26137474914605374 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6927 0.16052335201123455 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.3173574709287504E-5 2 0.0 0.0 0.0 0.0 2.3173574709287504E-5 3 2.3173574709287504E-5 0.0 0.0 0.0 2.3173574709287504E-5 4 2.3173574709287504E-5 0.0 0.0 0.0 2.3173574709287504E-5 5 2.3173574709287504E-5 0.0 0.0 0.0 2.3173574709287504E-5 6 4.634714941857501E-5 0.0 0.0 0.0 6.952072412786252E-5 7 4.634714941857501E-5 0.0 0.0 0.0 6.952072412786252E-5 8 4.634714941857501E-5 0.0 0.0 0.0 6.952072412786252E-5 9 4.634714941857501E-5 0.0 0.0 2.3173574709287504E-5 1.1586787354643753E-4 10 6.952072412786252E-5 0.0 0.0 4.634714941857501E-5 1.1586787354643753E-4 11 6.952072412786252E-5 0.0 0.0 6.952072412786252E-5 1.1586787354643753E-4 12 6.952072412786252E-5 0.0 0.0 6.952072412786252E-5 1.1586787354643753E-4 13 6.952072412786252E-5 0.0 0.0 6.952072412786252E-5 1.1586787354643753E-4 14 6.952072412786252E-5 0.0 0.0 9.269429883715002E-5 1.6221502296501255E-4 15 6.952072412786252E-5 0.0 0.0 9.269429883715002E-5 1.6221502296501255E-4 16 6.952072412786252E-5 0.0 0.0 1.1586787354643753E-4 2.3173574709287506E-4 17 6.952072412786252E-5 0.0 0.0 3.244300459300251E-4 2.3173574709287506E-4 18 6.952072412786252E-5 0.0 0.0 4.402979194764626E-4 3.012564712207376E-4 19 6.952072412786252E-5 0.0 0.0 5.098186436043251E-4 3.012564712207376E-4 20 6.952072412786252E-5 0.0 0.0 7.415543906972001E-4 3.012564712207376E-4 21 6.952072412786252E-5 0.0 0.0 0.0012977201837201004 3.244300459300251E-4 22 6.952072412786252E-5 0.0 0.0 0.002155142447963738 3.4760362063931255E-4 23 6.952072412786252E-5 0.0 0.0 0.002433225344475188 5.561657930229001E-4 24 6.952072412786252E-5 0.0 0.0 0.0030820854363352384 5.793393677321876E-4 25 6.952072412786252E-5 0.0 0.0 0.003522383355811701 5.793393677321876E-4 26 6.952072412786252E-5 2.3173574709287504E-5 0.0 0.004263937746508901 6.025129424414752E-4 27 9.269429883715002E-5 2.3173574709287504E-5 0.0 0.006233691596798339 6.256865171507626E-4 28 1.1586787354643753E-4 2.3173574709287504E-5 0.0 0.010845232963946553 6.256865171507626E-4 29 1.1586787354643753E-4 4.634714941857501E-5 0.0 0.023938302674693993 6.488600918600502E-4 30 1.1586787354643753E-4 4.634714941857501E-5 0.0 0.0415502194537525 6.488600918600502E-4 31 1.3904144825572503E-4 4.634714941857501E-5 0.0 0.09074771856156987 6.488600918600502E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAC 145 2.9867806E-9 16.586206 3 AAGTACG 930 0.0 16.112904 1 ATACGGG 495 0.0 15.323233 1 TATACTG 580 0.0 15.310345 5 TATAGCG 85 5.368404E-4 15.235294 5 GAGTACT 11180 0.0 14.727192 11 GTACTTT 11400 0.0 14.524123 13 AGTACTT 11525 0.0 14.350542 12 TACTTTT 11665 0.0 14.162452 14 TATATCG 95 0.0012460466 13.631579 5 ACTTTTT 12605 0.0 13.35581 15 TAATCCC 1210 0.0 13.301653 5 AATCAAC 1445 0.0 13.1868515 1 ACGCTAC 225 4.0745363E-10 13.155556 1 CGGGAAT 1335 0.0 13.026217 6 TAATACC 470 0.0 12.989362 4 TTATACT 610 0.0 12.737705 4 TTAATCC 1300 0.0 12.523078 4 ACGACTA 120 5.1265163E-4 12.333334 8 TAGTACT 435 0.0 12.333334 4 >>END_MODULE