##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727234.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6158102 Sequences flagged as poor quality 0 Sequence length 43 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.210270144924525 31.0 31.0 34.0 30.0 34.0 2 31.43418394174049 31.0 31.0 34.0 30.0 34.0 3 31.589729757642857 31.0 31.0 34.0 30.0 34.0 4 35.404165439286324 37.0 35.0 37.0 33.0 37.0 5 35.22459079112363 37.0 35.0 37.0 33.0 37.0 6 35.240933976085486 37.0 35.0 37.0 32.0 37.0 7 35.13297149024164 37.0 35.0 37.0 32.0 37.0 8 35.14895384974137 37.0 35.0 37.0 32.0 37.0 9 36.70503606468357 39.0 35.0 39.0 32.0 39.0 10 36.44655398692649 38.0 35.0 39.0 32.0 39.0 11 36.60424413236416 39.0 35.0 39.0 32.0 39.0 12 36.46566214720055 38.0 35.0 39.0 32.0 39.0 13 36.530577440906306 38.0 35.0 39.0 32.0 39.0 14 37.53515579962787 39.0 36.0 41.0 32.0 41.0 15 37.53384013450898 39.0 36.0 41.0 32.0 41.0 16 37.4959545976991 39.0 36.0 41.0 32.0 41.0 17 37.48534451037024 39.0 36.0 41.0 32.0 41.0 18 37.43547817168342 39.0 36.0 41.0 32.0 41.0 19 37.45388887680003 39.0 36.0 41.0 32.0 41.0 20 37.381461365855905 39.0 36.0 41.0 32.0 41.0 21 37.275442660741895 39.0 36.0 41.0 31.0 41.0 22 37.201043275996405 39.0 36.0 40.0 31.0 41.0 23 37.08659518793291 39.0 36.0 40.0 31.0 41.0 24 36.949678163823855 39.0 36.0 40.0 31.0 41.0 25 36.822972240472794 39.0 35.0 40.0 30.0 41.0 26 36.58420597775093 39.0 35.0 40.0 30.0 41.0 27 36.40372796683134 38.0 35.0 40.0 30.0 41.0 28 36.18627508930511 38.0 35.0 40.0 29.0 41.0 29 36.10521082632279 38.0 35.0 40.0 29.0 41.0 30 35.9889899517741 38.0 35.0 40.0 29.0 41.0 31 36.09612458514003 38.0 35.0 40.0 30.0 41.0 32 36.047896251150114 38.0 35.0 40.0 30.0 41.0 33 35.99895227458071 38.0 35.0 40.0 29.0 41.0 34 36.026420315870055 38.0 35.0 40.0 29.0 41.0 35 35.79184787780391 38.0 34.0 40.0 28.0 41.0 36 35.74471452405303 38.0 34.0 40.0 27.0 41.0 37 35.62957174142293 38.0 34.0 40.0 27.0 41.0 38 35.51348662298871 38.0 34.0 40.0 27.0 41.0 39 35.420423695482796 38.0 34.0 40.0 26.0 41.0 40 35.19079986008676 38.0 34.0 40.0 25.0 41.0 41 35.08850876455116 38.0 33.0 40.0 25.0 41.0 42 34.83881088686092 38.0 33.0 40.0 24.0 41.0 43 34.460656384061195 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 9.0 14 6.0 15 48.0 16 119.0 17 294.0 18 510.0 19 1099.0 20 2194.0 21 4537.0 22 8153.0 23 14608.0 24 23225.0 25 36445.0 26 54637.0 27 78124.0 28 107965.0 29 143228.0 30 184452.0 31 229547.0 32 283474.0 33 344450.0 34 420903.0 35 513187.0 36 639278.0 37 829079.0 38 1085114.0 39 1153411.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.60817699999123 19.471307880252713 13.151893229439851 24.768621890316204 2 17.89850184358752 23.03781262473405 34.32153283592899 24.742152695749436 3 20.084402629251674 24.902413113650926 30.137662546024735 24.875521711072665 4 14.497096670370189 15.918671045072005 34.24345683134187 35.34077545321595 5 14.145007666323162 38.2502108604242 33.02962503706499 14.575156436187644 6 33.80947571183459 35.36955055307626 15.993905264966383 14.827068470122775 7 27.97777626937651 31.976881837942923 21.559337601098523 18.486004291582052 8 28.131800999723616 33.22754316183785 20.04807650149348 18.592579336945054 9 27.66595941411818 13.578323321049247 19.87584811034309 38.879869154489484 10 17.16171638599036 27.279736516218794 32.04363942006807 23.51490767772278 11 35.64642157599857 22.7448002647569 20.928396444229083 20.68038171501544 12 21.47120979808389 26.4900126694881 29.375106160956737 22.663671371471274 13 30.07439629937926 19.5502445396325 25.494754715007968 24.88060444598027 14 22.813262917697692 21.234627162719942 25.92988878716202 30.022221132420345 15 25.270838319988854 27.972628579390207 23.000690797261882 23.755842303359053 16 23.882520945577063 26.330401802373522 25.434784938606082 24.35229231344333 17 23.346755217760276 26.760501855928986 26.19018002624835 23.70256290006239 18 23.23147619185262 24.809056426801636 28.0071034874057 23.95236389394005 19 23.451170506756792 25.993219988886185 28.233358265257703 22.32225123909932 20 23.530691761844803 25.14123669922973 27.679340160328618 23.648731378596846 21 24.413220177255916 25.747040240645575 27.52620856231352 22.313531019784993 22 24.399384745494636 25.34688447836687 26.890947892711097 23.362782883427393 23 22.914089438596502 25.676628935344038 27.429393017523907 23.979888608535553 24 22.929370120858668 26.497726085082707 27.366321636114506 23.20658215794412 25 23.494576738092356 25.55236986980729 26.907641347934803 24.045412044165555 26 23.13160775836451 26.539313574214912 27.482298929118095 22.846779738302484 27 23.892020625835688 26.125322380174932 26.771560458076205 23.211096535913175 28 22.81931997878567 26.64393996721717 27.72146352886003 22.81527652513713 29 22.86506459295413 26.69622880556379 27.754282082368885 22.684424519113193 30 22.860810035299835 27.128001452395562 27.59376184415263 22.417426668151975 31 23.151711355219515 26.709106149914376 26.94063852791006 23.198543966956052 32 22.390226728949926 26.844586205295073 27.00908494208118 23.75610212367382 33 22.17680057913948 26.49590734287935 27.612127892652637 23.715164185328533 34 23.131981250066985 26.465703231287822 27.67066865732331 22.73164686132188 35 23.036887014862696 26.3410057189699 27.92210976693793 22.69999749922947 36 22.137177981137697 26.780589214014316 27.684114358612444 23.398118446235543 37 22.444545413505654 26.27190975401187 27.95432748596889 23.329217346513584 38 22.0274850919975 25.792833571123055 28.457242182737474 23.722439154141973 39 22.299500722787638 25.39461022243542 28.54580843253327 23.76008062224367 40 22.24104115196533 25.679194660952355 29.015449890242156 23.064314296840163 41 21.231346931246023 25.898694110620447 29.562063116200417 23.307895841933117 42 21.819385258639755 25.948108686734972 29.281538370101696 22.950967684523576 43 21.07605557686443 25.20667894101137 29.31393471559906 24.40333076652514 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3075.0 1 2835.0 2 2595.0 3 5102.0 4 7609.0 5 7609.0 6 11486.0 7 15363.0 8 14597.0 9 13831.0 10 18659.5 11 23488.0 12 23488.0 13 41487.5 14 59487.0 15 90050.0 16 120613.0 17 104548.5 18 88484.0 19 88484.0 20 90336.0 21 92188.0 22 73788.0 23 55388.0 24 64692.5 25 73997.0 26 73997.0 27 83207.0 28 92417.0 29 101800.5 30 111184.0 31 121767.0 32 132350.0 33 132350.0 34 152060.5 35 171771.0 36 201096.0 37 230421.0 38 260511.5 39 290602.0 40 290602.0 41 319347.5 42 348093.0 43 369183.5 44 390274.0 45 422471.0 46 454668.0 47 454668.0 48 490224.5 49 525781.0 50 523312.0 51 520843.0 52 497988.5 53 475134.0 54 475134.0 55 454092.5 56 433051.0 57 411425.0 58 389799.0 59 357795.5 60 325792.0 61 325792.0 62 276078.5 63 226365.0 64 199565.0 65 172765.0 66 145033.5 67 117302.0 68 117302.0 69 96424.5 70 75547.0 71 63694.5 72 51842.0 73 38537.0 74 25232.0 75 25232.0 76 19961.5 77 14691.0 78 12730.5 79 10770.0 80 8654.5 81 6539.0 82 6539.0 83 5375.0 84 4211.0 85 3538.5 86 2866.0 87 1886.5 88 907.0 89 907.0 90 662.0 91 417.0 92 296.0 93 175.0 94 166.5 95 158.0 96 158.0 97 84.5 98 11.0 99 8.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 6158102.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.75860308513499 #Duplication Level Percentage of deduplicated Percentage of total 1 80.35416514988879 36.76894349331148 2 9.97011322574575 9.124369076215096 3 3.3896640263030178 4.653188723146811 4 1.6691323343021802 3.055086559275933 5 0.9838352138372924 2.250946252557979 6 0.6446566739138632 1.7699153320684662 7 0.46490744357139585 1.4891460627195812 8 0.34188716672957314 1.2515423329823927 9 0.2683460667715425 1.105122704297053 >10 1.6922453012161887 14.484841895709883 >50 0.12578585819970933 3.929820963849423 >100 0.07622972942986701 6.840837908145936 >500 0.010190554239177857 3.2855507598634683 >1k 0.008486185335812527 6.938605519811871 >5k 2.1304230967873284E-4 0.6115895549338103 >10k+ 1.4202820645248856E-4 2.4404928611110686 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 56824 0.9227518478907949 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 37285 0.6054625272527152 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35025 0.5687629077920437 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21073 0.3421995933162523 No Hit GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA 8882 0.1442327522343735 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT 6626 0.10759808785239348 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6247 0.10144359414637821 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6238769672863488E-5 2 0.0 0.0 0.0 0.0 1.6238769672863488E-5 3 1.6238769672863488E-5 0.0 0.0 0.0 1.6238769672863488E-5 4 1.6238769672863488E-5 1.6238769672863488E-5 0.0 0.0 3.2477539345726976E-5 5 1.6238769672863488E-5 1.6238769672863488E-5 0.0 0.0 3.2477539345726976E-5 6 1.6238769672863488E-5 1.6238769672863488E-5 0.0 0.0 6.495507869145395E-5 7 1.6238769672863488E-5 1.6238769672863488E-5 0.0 0.0 6.495507869145395E-5 8 1.6238769672863488E-5 1.6238769672863488E-5 0.0 0.0 6.495507869145395E-5 9 1.6238769672863488E-5 1.6238769672863488E-5 0.0 0.0 1.299101573829079E-4 10 1.6238769672863488E-5 1.6238769672863488E-5 0.0 0.0 1.299101573829079E-4 11 1.6238769672863488E-5 1.6238769672863488E-5 0.0 0.0 1.299101573829079E-4 12 1.6238769672863488E-5 1.6238769672863488E-5 0.0 8.119384836431744E-5 1.461489270557714E-4 13 1.6238769672863488E-5 3.2477539345726976E-5 0.0 1.7862646640149838E-4 1.461489270557714E-4 14 1.6238769672863488E-5 3.2477539345726976E-5 0.0 3.2477539345726977E-4 2.598203147658158E-4 15 1.6238769672863488E-5 3.2477539345726976E-5 0.0 5.521181688773586E-4 3.085366237844063E-4 16 4.871630901859047E-5 3.2477539345726976E-5 0.0 9.093711016803554E-4 4.059692418215872E-4 17 4.871630901859047E-5 3.2477539345726976E-5 0.0 0.0014777280402305775 4.059692418215872E-4 18 4.871630901859047E-5 3.2477539345726976E-5 0.0 0.0016888320459778029 4.059692418215872E-4 19 4.871630901859047E-5 3.2477539345726976E-5 0.0 0.0021759951361637075 4.059692418215872E-4 20 4.871630901859047E-5 4.871630901859047E-5 0.0 0.0028742622320968377 4.059692418215872E-4 21 4.871630901859047E-5 4.871630901859047E-5 0.0 0.003881065951814374 4.059692418215872E-4 22 4.871630901859047E-5 4.871630901859047E-5 0.0 0.0064467915601268055 4.059692418215872E-4 23 4.871630901859047E-5 4.871630901859047E-5 0.0 0.010344096281614043 5.358793992044952E-4 24 4.871630901859047E-5 4.871630901859047E-5 0.0 0.015735367813004723 5.358793992044952E-4 25 8.119384836431744E-5 4.871630901859047E-5 0.0 0.018869450359867375 5.521181688773586E-4 26 8.119384836431744E-5 4.871630901859047E-5 0.0 0.024065856655183692 5.683569385502221E-4 27 8.119384836431744E-5 4.871630901859047E-5 0.0 0.05521181688773586 5.683569385502221E-4 28 8.119384836431744E-5 4.871630901859047E-5 0.0 0.11417478956990319 5.683569385502221E-4 29 8.119384836431744E-5 4.871630901859047E-5 0.0 0.19442678929319457 5.683569385502221E-4 30 8.119384836431744E-5 4.871630901859047E-5 0.0 0.32346005311376785 5.683569385502221E-4 31 8.119384836431744E-5 4.871630901859047E-5 0.0 0.71647075673641 5.683569385502221E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAAGACG 1990 0.0 17.75628 4 AAGACGG 1925 0.0 17.683117 5 CTTATAC 5205 0.0 17.415945 37 CGCAAGA 2265 0.0 15.110375 2 CTAGCGG 1010 0.0 14.653466 29 GACGGAC 2255 0.0 14.603105 7 GTACTAG 305 0.0 14.557376 1 ACGGACC 2225 0.0 14.550562 8 CGGACCA 2285 0.0 14.330417 9 TCTTATA 8445 0.0 14.173476 37 AGACGGA 2405 0.0 14.153846 6 GCGCAAG 2430 0.0 14.084362 1 TCTAGCG 1025 0.0 14.07805 28 ATACCGT 1600 0.0 13.990625 6 TACCGTC 1545 0.0 13.889967 7 ACCGTCG 1625 0.0 13.889231 8 CGTTATA 230 4.0017767E-11 13.673913 2 CGTCGTA 1540 0.0 13.214285 10 CCGTCGT 1620 0.0 13.132716 9 GCGTTAG 155 1.8911287E-6 13.129032 1 >>END_MODULE