##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727221.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5462727 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.975220434775526 31.0 31.0 33.0 28.0 34.0 2 31.217554162966593 31.0 31.0 34.0 28.0 34.0 3 31.36394844552913 31.0 31.0 34.0 28.0 34.0 4 35.20577799329895 35.0 35.0 37.0 33.0 37.0 5 35.00947457194914 35.0 35.0 37.0 32.0 37.0 6 35.01871501175145 36.0 35.0 37.0 32.0 37.0 7 34.930598581990274 36.0 35.0 37.0 32.0 37.0 8 34.935253216937255 36.0 35.0 37.0 32.0 37.0 9 36.468698692063505 38.0 35.0 39.0 32.0 39.0 10 36.19380265570657 38.0 35.0 39.0 32.0 39.0 11 36.34443493149118 38.0 35.0 39.0 32.0 39.0 12 36.18538360053505 38.0 35.0 39.0 31.0 39.0 13 36.26062697257249 38.0 35.0 39.0 32.0 39.0 14 37.21389609987832 39.0 36.0 40.0 31.0 41.0 15 37.21557401642074 39.0 36.0 40.0 31.0 41.0 16 37.157380004528875 39.0 36.0 40.0 31.0 41.0 17 37.1373339725745 39.0 36.0 40.0 31.0 41.0 18 37.07314972906389 39.0 36.0 40.0 31.0 41.0 19 37.081289070458766 39.0 36.0 40.0 31.0 41.0 20 36.99777528695833 39.0 36.0 40.0 31.0 41.0 21 36.886766444671316 39.0 36.0 40.0 31.0 41.0 22 36.81499771085028 39.0 36.0 40.0 30.0 41.0 23 36.69251309831152 39.0 35.0 40.0 30.0 41.0 24 36.54260134178406 38.0 35.0 40.0 30.0 41.0 25 36.412362909587095 38.0 35.0 40.0 30.0 41.0 26 36.15491218946142 38.0 35.0 40.0 29.0 41.0 27 35.972232732845704 38.0 34.0 40.0 28.0 41.0 28 35.74598657410484 38.0 34.0 40.0 27.0 41.0 29 35.691443486009824 38.0 34.0 40.0 27.0 41.0 30 35.59069252408184 38.0 34.0 40.0 27.0 41.0 31 35.72046488869021 38.0 34.0 40.0 27.0 41.0 32 35.68889787097177 38.0 34.0 40.0 27.0 41.0 33 35.67173830945607 38.0 34.0 40.0 27.0 41.0 34 35.72258672271194 38.0 34.0 40.0 27.0 41.0 35 35.49476223139102 38.0 34.0 40.0 27.0 41.0 36 35.44334688517292 38.0 34.0 40.0 26.0 41.0 37 35.34818543925039 38.0 34.0 40.0 26.0 41.0 38 35.24594126706314 38.0 33.0 40.0 26.0 41.0 39 35.17348441538448 38.0 33.0 40.0 25.0 41.0 40 34.95271336092761 38.0 33.0 40.0 25.0 41.0 41 34.87349614945063 38.0 33.0 40.0 25.0 41.0 42 34.63711713947997 38.0 33.0 40.0 24.0 41.0 43 34.279831666491845 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 6.0 13 8.0 14 22.0 15 55.0 16 147.0 17 268.0 18 589.0 19 1224.0 20 2573.0 21 5127.0 22 9634.0 23 16503.0 24 26486.0 25 40461.0 26 58844.0 27 82100.0 28 111111.0 29 145144.0 30 182931.0 31 223306.0 32 269641.0 33 323608.0 34 389530.0 35 467157.0 36 572469.0 37 723813.0 38 964568.0 39 845399.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.70440880534576 19.953605589296338 12.993309019469578 25.34867658588833 2 18.823528981038226 23.37848843627002 32.741376239376415 25.056606343315345 3 20.619573337638876 24.530019530538503 30.298988032900056 24.551419098922572 4 15.256519317183523 16.324227807832976 34.22470132591287 34.19455154907064 5 14.195346024064538 38.260945494805064 33.23675153453578 14.306956946594623 6 34.26081881814705 35.70449337849026 15.45451566589361 14.580172137469068 7 28.211916868626236 32.0474554192439 21.13449930776332 18.606128404366537 8 28.503236570306367 33.00362621086501 19.95928041068133 18.533856808147288 9 27.961986751305712 13.026241289378 19.00393338345482 40.00783857586147 10 16.99202614371906 26.968801479554077 32.312927224809144 23.726245151917713 11 37.02141805731826 21.764221422743624 20.613184587111892 20.601175932826223 12 21.722355885622694 25.842495881635674 29.07793122372764 23.357217009013997 13 30.705030655934294 19.031849843493916 24.99753328328507 25.26558621728671 14 22.985571125923006 20.583053116145106 25.191648786402837 31.239726971529052 15 25.87789944472788 27.503918830283848 22.265710880298432 24.35247084468984 16 24.600259174584416 25.80665297753302 24.930680226194717 24.662407621687848 17 23.9633062388071 25.992439307327643 25.602304490046823 24.441949963818438 18 24.068693163689126 24.18542973134114 27.343394608590177 24.402482496379555 19 24.428568368875105 25.297676416925103 27.329024496373332 22.944730717826463 20 24.20221621911547 23.978811315300945 26.974915641949526 24.844056823634055 21 24.97913587847242 25.085200120745554 26.828962897102492 23.106701103679537 22 25.160711856916883 24.508565044528126 26.071648830336937 24.259074268218054 23 23.540916469008977 24.572306102794446 26.90136263444979 24.985414793746784 24 23.614982041020905 25.466145388557766 26.76309835728566 24.155774213135675 25 24.39966339156249 24.26301003143668 26.18168544757957 25.15564112942126 26 23.82566436140777 25.425854156724288 26.89982494091321 23.848656540954728 27 25.10608712461743 24.837759602484255 25.992951871839832 24.063201401058482 28 23.628400247715106 25.556905918966844 26.927192224689243 23.887501608628803 29 23.805271616172654 25.429680084690304 27.09655818421825 23.668490114918793 30 23.98988636993941 25.88857177010676 26.847964395804514 23.273577464149316 31 24.296564701109904 25.53508531544776 26.134950547592805 24.03339943584953 32 23.509704951391495 25.6138005798203 26.139435487074497 24.737058981713712 33 23.223877012342005 25.125070317444013 26.896841083217225 24.754211586996753 34 24.196248503723506 25.351568914207135 27.067634901030203 23.38454768103916 35 24.182830297029305 25.23344110002202 27.333179930097184 23.25054867285149 36 23.28293176649684 25.77844362348695 26.86969346994642 24.068931140069786 37 23.612419218459937 25.54070521920645 27.18997306656547 23.65690249576814 38 23.501668672075322 24.819600174052265 27.371860244892343 24.306870908980073 39 23.594955413294496 24.63211139784214 27.343779031974325 24.42915415688904 40 23.80318474637301 24.678901215455213 27.848380488353165 23.669533549818617 41 22.561753497840915 25.079488687609686 28.232730648996373 24.12602716555303 42 23.491417381831457 24.969873105502067 28.058239044345434 23.48047046832104 43 22.751585426106775 23.893597465148815 28.204210095067907 25.150607013676503 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 906.0 1 917.0 2 928.0 3 2030.0 4 3132.0 5 3132.0 6 5336.0 7 7540.0 8 7199.5 9 6859.0 10 9286.5 11 11714.0 12 11714.0 13 21767.5 14 31821.0 15 54030.0 16 76239.0 17 65413.5 18 54588.0 19 54588.0 20 57848.0 21 61108.0 22 49246.0 23 37384.0 24 43761.5 25 50139.0 26 50139.0 27 58718.0 28 67297.0 29 76240.5 30 85184.0 31 96093.0 32 107002.0 33 107002.0 34 123735.5 35 140469.0 36 166969.5 37 193470.0 38 219959.0 39 246448.0 40 246448.0 41 273830.5 42 301213.0 43 320058.5 44 338904.0 45 372061.5 46 405219.0 47 405219.0 48 455475.0 49 505731.0 50 506859.5 51 507988.0 52 478958.5 53 449929.0 54 449929.0 55 431668.5 56 413408.0 57 394543.5 58 375679.0 59 347595.0 60 319511.0 61 319511.0 62 269255.5 63 219000.0 64 191063.0 65 163126.0 66 136707.5 67 110289.0 68 110289.0 69 90161.0 70 70033.0 71 58312.5 72 46592.0 73 34010.5 74 21429.0 75 21429.0 76 16601.0 77 11773.0 78 10244.0 79 8715.0 80 6820.5 81 4926.0 82 4926.0 83 4077.5 84 3229.0 85 2841.5 86 2454.0 87 1587.5 88 721.0 89 721.0 90 508.5 91 296.0 92 233.0 93 170.0 94 155.5 95 141.0 96 141.0 97 73.5 98 6.0 99 11.5 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5462727.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.18576388592844 #Duplication Level Percentage of deduplicated Percentage of total 1 79.37167450025314 34.27726394198699 2 10.073054540345979 8.700251099789218 3 3.489076090207245 4.520352486351853 4 1.7692270673887474 3.056216895713762 5 1.099914253920947 2.375031863229858 6 0.7263349685006084 1.882039827105633 7 0.5217732736601435 1.5773224178792418 8 0.3870407858047349 1.3371721591989987 9 0.3024757358154077 1.1756381137331997 >10 1.9991782580519042 16.25034121337199 >50 0.1520999582568712 4.522928317106833 >100 0.08705894778858182 7.23955868871171 >500 0.011608898266743432 3.522375329607504 >1k 0.009185057827833494 7.25901987320039 >5k 1.275702476086998E-4 0.38202758123810004 >10k+ 1.7009366347826637E-4 1.9224601917748279 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 41312 0.7562523259902975 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 25965 0.4753120556820796 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 24666 0.45153272349139906 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12743 0.23327177067424382 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT 8002 0.1464836152346621 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 6717 0.12296056530007814 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 6084 0.11137294614942317 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.8305875435473894E-5 3.661175087094779E-5 2 0.0 0.0 0.0 1.8305875435473894E-5 3.661175087094779E-5 3 0.0 0.0 0.0 1.8305875435473894E-5 5.4917626306421686E-5 4 0.0 0.0 0.0 1.8305875435473894E-5 5.4917626306421686E-5 5 0.0 0.0 0.0 1.8305875435473894E-5 5.4917626306421686E-5 6 0.0 0.0 0.0 1.8305875435473894E-5 5.4917626306421686E-5 7 0.0 0.0 0.0 1.8305875435473894E-5 5.4917626306421686E-5 8 0.0 0.0 0.0 1.8305875435473894E-5 5.4917626306421686E-5 9 0.0 0.0 0.0 1.8305875435473894E-5 9.152937717736947E-5 10 0.0 0.0 0.0 1.8305875435473894E-5 9.152937717736947E-5 11 0.0 0.0 0.0 1.8305875435473894E-5 9.152937717736947E-5 12 0.0 0.0 0.0 3.661175087094779E-5 9.152937717736947E-5 13 0.0 0.0 0.0 5.4917626306421686E-5 1.0983525261284337E-4 14 0.0 0.0 0.0 1.0983525261284337E-4 1.4644700348379115E-4 15 0.0 1.8305875435473894E-5 0.0 1.4644700348379115E-4 2.0136462979021284E-4 16 0.0 1.8305875435473894E-5 0.0 3.111998824030562E-4 2.562822560966345E-4 17 0.0 1.8305875435473894E-5 0.0 6.407056402415863E-4 2.562822560966345E-4 18 0.0 1.8305875435473894E-5 0.0 7.871526437253774E-4 3.111998824030562E-4 19 0.0 1.8305875435473894E-5 0.0 0.0011349642769993814 3.111998824030562E-4 20 0.0 1.8305875435473894E-5 0.0 0.0014278582839669638 3.111998824030562E-4 21 0.0 1.8305875435473894E-5 0.0 0.0021967050522568674 3.111998824030562E-4 22 0.0 1.8305875435473894E-5 0.0 0.0031852223257724578 3.111998824030562E-4 23 0.0 1.8305875435473894E-5 0.0 0.005436845004335746 3.47811633274004E-4 24 0.0 1.8305875435473894E-5 0.0 0.007908138188124723 3.6611750870947787E-4 25 0.0 3.661175087094779E-5 0.0 0.008988184838817682 3.6611750870947787E-4 26 0.0 3.661175087094779E-5 0.0 0.011715760278703292 3.6611750870947787E-4 27 0.0 3.661175087094779E-5 0.0 0.02317523830130995 3.844233841449518E-4 28 0.0 3.661175087094779E-5 0.0 0.0450873711975722 3.844233841449518E-4 29 0.0 3.661175087094779E-5 0.0 0.07675653570094204 3.844233841449518E-4 30 0.0 3.661175087094779E-5 0.0 0.1300815508444775 3.844233841449518E-4 31 0.0 3.661175087094779E-5 0.0 0.3130121640711681 4.027292595804257E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGACGG 1830 0.0 17.994535 5 CTTATAC 2390 0.0 17.725943 37 CAAGACG 1945 0.0 17.501286 4 ACGCGTA 125 1.6609374E-7 16.279999 6 TCTATAC 400 0.0 15.724999 3 ACGGACC 2180 0.0 14.850917 8 TATACAG 905 0.0 14.718232 5 GACGGAC 2180 0.0 14.681192 7 TCTTATA 3835 0.0 14.664929 37 TCGTTTA 1430 0.0 14.360139 30 CGCATCG 1515 0.0 14.287129 13 GCGCAAG 2375 0.0 14.254737 1 CGGACCA 2245 0.0 14.091313 9 AGACGGA 2355 0.0 13.904459 6 TAAGTCG 80 0.0063026138 13.875 5 CGCGAAC 80 0.0063026138 13.875 14 CGCAAGA 2415 0.0 13.865424 2 ACGGATG 1655 0.0 13.749245 28 GTCGGGT 865 0.0 13.687862 30 CGCTTCG 1110 0.0 13.666667 32 >>END_MODULE