##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727200.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5939380 Sequences flagged as poor quality 0 Sequence length 43 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.167836878596756 31.0 31.0 33.0 30.0 34.0 2 31.274471072738233 31.0 31.0 34.0 30.0 34.0 3 31.349617973593205 31.0 31.0 34.0 28.0 34.0 4 35.17613606133973 35.0 35.0 37.0 33.0 37.0 5 35.005716084843876 35.0 35.0 37.0 32.0 37.0 6 35.068953998565505 36.0 35.0 37.0 32.0 37.0 7 34.862788035114775 35.0 35.0 37.0 32.0 37.0 8 34.80094656344602 35.0 35.0 37.0 32.0 37.0 9 36.44714498819742 38.0 35.0 39.0 32.0 39.0 10 36.23377844152083 38.0 35.0 39.0 32.0 39.0 11 36.34842491977277 38.0 35.0 39.0 32.0 39.0 12 36.206267489199206 38.0 35.0 39.0 32.0 39.0 13 36.28638174354899 38.0 35.0 39.0 32.0 39.0 14 37.246904222326236 39.0 36.0 40.0 31.0 41.0 15 37.1216682549357 39.0 36.0 40.0 31.0 41.0 16 37.032263300209785 39.0 36.0 40.0 31.0 41.0 17 36.980233121975694 39.0 36.0 40.0 31.0 41.0 18 36.938181089608676 39.0 36.0 40.0 31.0 41.0 19 36.931723513228654 39.0 36.0 40.0 31.0 41.0 20 36.85410598412629 39.0 36.0 40.0 31.0 41.0 21 36.70572063077291 39.0 35.0 40.0 30.0 41.0 22 36.72002212352131 39.0 35.0 40.0 30.0 41.0 23 36.504392040920095 38.0 35.0 40.0 30.0 41.0 24 36.39276321770959 38.0 35.0 40.0 30.0 41.0 25 36.28807249241503 38.0 35.0 40.0 30.0 41.0 26 35.93394276843711 38.0 34.0 40.0 27.0 41.0 27 36.11121110284238 38.0 35.0 40.0 29.0 41.0 28 35.98026746899508 38.0 34.0 40.0 28.0 41.0 29 35.89496799329223 38.0 34.0 40.0 27.0 41.0 30 36.04044344695911 38.0 35.0 40.0 29.0 41.0 31 36.02102879425125 38.0 35.0 40.0 29.0 41.0 32 35.78891820358354 38.0 34.0 40.0 27.0 41.0 33 35.78396415114035 38.0 34.0 40.0 27.0 41.0 34 35.81224791139816 38.0 34.0 40.0 28.0 41.0 35 35.5681550936293 38.0 34.0 40.0 27.0 41.0 36 35.48451067283117 38.0 34.0 40.0 26.0 41.0 37 35.27549643228755 38.0 34.0 40.0 25.0 41.0 38 35.16706423902831 38.0 33.0 40.0 25.0 41.0 39 35.139796746461755 38.0 33.0 40.0 25.0 41.0 40 35.041472847334234 38.0 33.0 40.0 25.0 41.0 41 34.90909909788564 38.0 33.0 40.0 24.0 41.0 42 34.777417508224765 38.0 33.0 40.0 24.0 41.0 43 34.31269762163728 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 7.0 13 8.0 14 16.0 15 64.0 16 208.0 17 437.0 18 873.0 19 1715.0 20 3457.0 21 6637.0 22 11549.0 23 18836.0 24 29981.0 25 45080.0 26 64313.0 27 90217.0 28 122238.0 29 158547.0 30 200482.0 31 245474.0 32 294458.0 33 350013.0 34 418584.0 35 498139.0 36 604117.0 37 752768.0 38 1027344.0 39 993817.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.47421448029929 18.498732190902082 11.90206721913735 27.124986109661275 2 16.523020921375632 24.45098646660089 31.68527691442541 27.340715697598068 3 21.379807319955955 25.304274183500635 28.9764251487529 24.339493347790512 4 15.708878704511244 17.536426361000643 31.60068896080062 35.15400597368749 5 13.93542760355458 36.90878509204664 34.07062690045089 15.085160403947887 6 34.77549845270045 31.80087820614273 16.456532500025254 16.967090841131565 7 26.212146722385164 30.28933996477747 22.78315245025575 20.715360862581615 8 28.066515360189108 31.29427650697548 22.607511221710013 18.0316969111254 9 27.93172014587381 13.432479484390628 18.883351460926896 39.75244890880866 10 18.113809858941508 26.270856554051097 32.68115527209911 22.93417831490829 11 35.10549922719207 21.855042108772295 19.4646579272584 23.57480073677724 12 22.112964652876226 26.822850196485152 28.350349699800315 22.713835450838303 13 32.14311931548411 18.11480322861982 23.6535631665258 26.088514289370274 14 23.5324225760938 21.53275257686829 24.21729204058336 30.717532806454546 15 29.281608518060807 23.8239344847442 22.15569638581805 24.738760611376946 16 24.361903094262363 24.3465816297324 27.716866070195877 23.57464920580936 17 26.269206550178637 26.25469325081069 25.395445315841048 22.080654883169622 18 27.03172721731898 20.67256178254296 28.13751603702743 24.158194963110628 19 25.3974657287461 28.195687091918685 25.253191410551267 21.153655768783945 20 24.84870474696012 22.965915634291793 27.02645730699164 25.15892231175645 21 23.923035737736935 26.43878654000923 25.598328445056556 24.039849277197284 22 24.953092747054406 26.106394943579968 22.134212661927677 26.806299647437946 23 21.763551077721917 24.52862083247746 25.121308958174087 28.58651913162653 24 23.2072539558001 29.290161599358854 23.967737373261183 23.53484707157986 25 25.560277335344768 24.02499924234516 21.62749310534096 28.787230316969108 26 24.570561237031473 24.796679114655067 25.17821725499968 25.45454239331378 27 26.913364694631426 23.776606312443384 22.838427579983094 26.471601412942093 28 23.997252238449132 24.820873559193046 26.069842306772763 25.112031895585062 29 24.89374311796854 23.15910078156306 26.32114799861265 25.626008101855753 30 23.42448201664147 26.67731312022467 27.227235839431053 22.67096902370281 31 27.440153686074975 23.77015782792143 21.7571699402968 27.03251854570679 32 21.20830793786557 25.77444110328014 25.36130033774569 27.655950621108598 33 23.787432358259615 24.78022958625311 26.069151999030204 25.36318605645707 34 23.23321626163 24.66737268873182 25.848876482057047 26.25053456758113 35 23.342705804309542 26.545565362041156 27.53159420680273 22.580134626846572 36 25.581946263751437 24.84786290824968 24.527425421508642 25.04276540649024 37 23.68533415945772 25.14627789432567 26.21977378110173 24.948614165114876 38 24.62427054675741 24.328431587135356 26.56447305947759 24.48282480662965 39 25.133380925281763 21.052079509982523 25.852917307867152 27.961622256868562 40 24.20511905283043 23.68575507881294 27.03969101151972 25.06943485683691 41 22.742441130218978 23.08101182278285 27.63943374560981 26.53711330138836 42 25.196518828564596 24.04634827204186 27.20083577747172 23.55629712192182 43 23.850048321541976 20.89864598661813 28.56084305095818 26.690462640881705 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 92.0 1 208.5 2 325.0 3 2180.5 4 4036.0 5 4036.0 6 5948.5 7 7861.0 8 8053.5 9 8246.0 10 9610.0 11 10974.0 12 10974.0 13 15914.0 14 20854.0 15 29445.5 16 38037.0 17 34678.0 18 31319.0 19 31319.0 20 32070.5 21 32822.0 22 29136.5 23 25451.0 24 29073.0 25 32695.0 26 32695.0 27 37251.5 28 41808.0 29 46552.5 30 51297.0 31 59585.0 32 67873.0 33 67873.0 34 83221.5 35 98570.0 36 124922.5 37 151275.0 38 178761.5 39 206248.0 40 206248.0 41 227304.0 42 248360.0 43 277975.5 44 307591.0 45 375065.0 46 442539.0 47 442539.0 48 720694.5 49 998850.0 50 995894.0 51 992938.0 52 717077.5 53 441217.0 54 441217.0 55 398190.0 56 355163.0 57 346683.0 58 338203.0 59 320999.5 60 303796.0 61 303796.0 62 253828.0 63 203860.0 64 180063.0 65 156266.0 66 133665.0 67 111064.0 68 111064.0 69 93678.5 70 76293.0 71 65835.0 72 55377.0 73 41773.0 74 28169.0 75 28169.0 76 22262.5 77 16356.0 78 14442.0 79 12528.0 80 10314.5 81 8101.0 82 8101.0 83 6930.5 84 5760.0 85 5104.0 86 4448.0 87 3015.5 88 1583.0 89 1583.0 90 1099.0 91 615.0 92 442.0 93 269.0 94 246.0 95 223.0 96 223.0 97 118.0 98 13.0 99 14.0 100 15.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5939380.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.91561517156508 #Duplication Level Percentage of deduplicated Percentage of total 1 82.66829158025214 29.690825472870696 2 8.858578969617515 6.363226264794044 3 2.870365587434632 3.092728375200168 4 1.4308342788379245 2.0555717333210697 5 0.8513703759114727 1.5288745394853576 6 0.5474287616838578 1.1796744443090308 7 0.41291358299100106 1.0381031742071825 8 0.30911728834174507 0.8881710056767869 9 0.24324215693546086 0.7862572531795907 >10 1.5431863658023428 10.270029553163157 >50 0.11846572496613263 2.933668444192259 >100 0.10710589731577548 8.215352372890468 >500 0.019501916338627162 4.909675622125416 >1k 0.016777383569755503 11.773326117304936 >5k 0.001386165594082362 3.5393351126892645 >10k+ 0.001433964407671409 11.735180514590661 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 70355 1.184551249457014 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 67726 1.140287370062195 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA 43249 0.7281736477544795 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG 40418 0.6805087399694918 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG 31855 0.5363354424199159 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC 29062 0.48931033205486096 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 28413 0.47838326559337846 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGT 25416 0.4279234532897373 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG 24051 0.40494125649478563 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC 23281 0.39197694035404373 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGT 22167 0.37322077388548974 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 19825 0.3337890486885836 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC 19430 0.3271385228761251 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA 19233 0.3238216783570002 No Hit ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 18923 0.31860227835228594 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCT 16962 0.28558536412891583 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCT 15550 0.2618118389461526 No Hit CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT 15282 0.2572995834582061 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 14504 0.24420057312379406 No Hit ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC 14185 0.23882964215120095 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCT 14144 0.238139334408642 No Hit CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA 13629 0.22946839569113275 No Hit GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC 13535 0.2278857389155097 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGC 13491 0.22714492085032448 No Hit CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC 12752 0.21470254471005393 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGT 12679 0.2134734601928147 No Hit GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 11452 0.19281473823867137 No Hit GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG 10772 0.18136573177671744 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGTCT 10627 0.17892439951644784 No Hit AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC 10612 0.1786718479033165 No Hit CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT 9568 0.16109425562937546 No Hit TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 9483 0.15966312982163122 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCTGT 9336 0.1571881240129441 No Hit GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT 8873 0.14939269755429016 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 8868 0.1493085136832464 No Hit GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG 7896 0.13294316915233578 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGT 7781 0.13100694011832886 No Hit ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG 7552 0.12715131882452377 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGT 7540 0.12694927753401872 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 7483 0.12598958140411962 No Hit ACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG 7377 0.12420488333799151 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTC 7245 0.12198242914243575 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT 7235 0.12181406140034819 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGG 7160 0.1205513033346915 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACCTGTC 7149 0.12036609881839519 No Hit GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT 7146 0.12031558849576891 No Hit TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCT 6945 0.11693139687980901 No Hit GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA 6864 0.11556761816889978 No Hit ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG 6861 0.11551710784627352 No Hit CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT 6769 0.11396812461906798 No Hit AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 6316 0.10634106590250161 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGACTGTC 6117 0.1029905478349592 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT 6009 0.10117217622041359 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6836774208755796E-5 2 0.0 0.0 0.0 0.0 1.6836774208755796E-5 3 0.0 0.0 0.0 0.0 1.6836774208755796E-5 4 0.0 0.0 0.0 0.0 1.6836774208755796E-5 5 0.0 0.0 0.0 0.0 1.6836774208755796E-5 6 0.0 0.0 0.0 0.0 5.0510322626267386E-5 7 0.0 0.0 0.0 1.6836774208755796E-5 5.0510322626267386E-5 8 0.0 0.0 0.0 1.6836774208755796E-5 5.0510322626267386E-5 9 0.0 0.0 0.0 3.367354841751159E-5 8.418387104377898E-5 10 0.0 0.0 0.0 6.734709683502319E-5 8.418387104377898E-5 11 1.6836774208755796E-5 0.0 0.0 8.418387104377898E-5 1.0102064525253477E-4 12 1.6836774208755796E-5 0.0 0.0 1.5153096787880218E-4 1.0102064525253477E-4 13 1.6836774208755796E-5 0.0 0.0 2.6938838734009274E-4 1.0102064525253477E-4 14 3.367354841751159E-5 1.6836774208755796E-5 0.0 4.545929036364065E-4 1.3469419367004637E-4 15 5.0510322626267386E-5 3.367354841751159E-5 0.0 6.061238715152087E-4 1.3469419367004637E-4 16 5.0510322626267386E-5 3.367354841751159E-5 0.0 0.0014816361303705101 1.3469419367004637E-4 17 5.0510322626267386E-5 5.0510322626267386E-5 0.0 0.0026938838734009273 1.3469419367004637E-4 18 5.0510322626267386E-5 5.0510322626267386E-5 0.0 0.0037040903259262753 1.5153096787880218E-4 19 5.0510322626267386E-5 5.0510322626267386E-5 0.0 0.006465321296162225 1.5153096787880218E-4 20 5.0510322626267386E-5 5.0510322626267386E-5 0.0 0.009243389040606932 1.5153096787880218E-4 21 5.0510322626267386E-5 5.0510322626267386E-5 0.0 0.015119423239462705 1.5153096787880218E-4 22 5.0510322626267386E-5 5.0510322626267386E-5 0.0 0.02439648582848715 1.5153096787880218E-4 23 5.0510322626267386E-5 5.0510322626267386E-5 0.0 0.0364516161619563 1.5153096787880218E-4 24 5.0510322626267386E-5 6.734709683502319E-5 0.0 0.05335573746754712 1.5153096787880218E-4 25 5.0510322626267386E-5 6.734709683502319E-5 0.0 0.0652425000589287 1.5153096787880218E-4 26 5.0510322626267386E-5 6.734709683502319E-5 0.0 0.08756806265973889 1.5153096787880218E-4 27 5.0510322626267386E-5 6.734709683502319E-5 0.0 0.1304176530210224 1.5153096787880218E-4 28 5.0510322626267386E-5 6.734709683502319E-5 0.0 0.20778263051025528 1.5153096787880218E-4 29 5.0510322626267386E-5 8.418387104377898E-5 0.0 0.27627462799147384 1.5153096787880218E-4 30 5.0510322626267386E-5 8.418387104377898E-5 0.0 0.38719529647875706 1.5153096787880218E-4 31 5.0510322626267386E-5 8.418387104377898E-5 0.0 0.6314800534735949 1.6836774208755796E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAAAAGT 2485 0.0 18.909456 1 AAAAGTA 2750 0.0 17.356363 2 TGGGCTG 5430 0.0 16.694292 36 AAGACGG 1990 0.0 16.082914 5 TAATACG 105 9.356141E-6 15.857142 4 GGGCTGT 5910 0.0 15.682741 37 CAAGACG 2045 0.0 15.650368 4 AGTACTC 3395 0.0 14.712811 5 TCTTATA 6115 0.0 14.340147 37 AAGTACT 3590 0.0 14.068244 4 AAAGTAC 3455 0.0 14.028943 3 TTAGAGT 1110 0.0 13.833333 4 TTATACT 635 0.0 13.692913 4 TCTAGAT 1135 0.0 13.691629 2 TACGACG 1775 0.0 13.549296 5 TACACTC 465 0.0 13.526881 5 GGTTATC 1260 0.0 13.361111 2 AGGTTAT 1280 0.0 13.296876 1 CGCAAGA 2450 0.0 13.289796 2 ACGACGG 1815 0.0 13.250689 6 >>END_MODULE