##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727195.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3154207 Sequences flagged as poor quality 0 Sequence length 43 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.13082844594537 31.0 31.0 33.0 30.0 34.0 2 31.25003844072377 31.0 31.0 34.0 30.0 34.0 3 31.32521232753589 31.0 31.0 34.0 28.0 34.0 4 35.155576663167636 35.0 35.0 37.0 33.0 37.0 5 34.97550192488952 35.0 35.0 37.0 32.0 37.0 6 35.04816107503407 36.0 35.0 37.0 32.0 37.0 7 34.82173712758865 35.0 35.0 37.0 32.0 37.0 8 34.77643445721856 35.0 35.0 37.0 32.0 37.0 9 36.41563315280196 38.0 35.0 39.0 32.0 39.0 10 36.20934834016918 38.0 35.0 39.0 32.0 39.0 11 36.31658480245589 38.0 35.0 39.0 32.0 39.0 12 36.16904026907555 38.0 35.0 39.0 31.0 39.0 13 36.24064273524217 38.0 35.0 39.0 32.0 39.0 14 37.19600267198697 39.0 36.0 40.0 31.0 41.0 15 37.07232657843952 39.0 36.0 40.0 31.0 41.0 16 36.957654966842696 38.0 36.0 40.0 31.0 41.0 17 36.90843150116654 38.0 36.0 40.0 31.0 41.0 18 36.85412751921481 38.0 36.0 40.0 31.0 41.0 19 36.843216377365216 39.0 36.0 40.0 31.0 41.0 20 36.77913624565541 39.0 36.0 40.0 30.0 41.0 21 36.616015689521966 38.0 35.0 40.0 30.0 41.0 22 36.64873484841039 38.0 35.0 40.0 30.0 41.0 23 36.43177318419495 38.0 35.0 40.0 30.0 41.0 24 36.32692432678007 38.0 35.0 40.0 30.0 41.0 25 36.237489486263904 38.0 34.0 40.0 29.0 41.0 26 35.881837495129524 38.0 34.0 40.0 27.0 41.0 27 36.097955841198754 38.0 34.0 40.0 29.0 41.0 28 35.98078217441024 38.0 34.0 40.0 28.0 41.0 29 35.927955584398866 38.0 34.0 40.0 28.0 41.0 30 36.10467195082631 38.0 35.0 40.0 29.0 41.0 31 36.11914436814071 38.0 35.0 40.0 29.0 41.0 32 35.8916355204335 38.0 34.0 40.0 28.0 41.0 33 35.94329478058986 38.0 34.0 40.0 29.0 41.0 34 35.98102724393168 38.0 35.0 40.0 29.0 41.0 35 35.787754893702285 38.0 34.0 40.0 27.0 41.0 36 35.7376900121013 38.0 34.0 40.0 27.0 41.0 37 35.529743926127864 38.0 34.0 40.0 26.0 41.0 38 35.45716054780171 38.0 34.0 40.0 26.0 41.0 39 35.41034085587915 38.0 34.0 40.0 26.0 41.0 40 35.35838992177749 38.0 34.0 40.0 26.0 41.0 41 35.251590019298035 38.0 33.0 40.0 26.0 41.0 42 35.15474031983316 38.0 33.0 40.0 26.0 41.0 43 34.6803310626094 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 2.0 14 3.0 15 28.0 16 76.0 17 162.0 18 375.0 19 743.0 20 1574.0 21 3026.0 22 5379.0 23 9126.0 24 14605.0 25 22225.0 26 32451.0 27 45546.0 28 62543.0 29 82005.0 30 105197.0 31 129464.0 32 157043.0 33 187683.0 34 223868.0 35 268315.0 36 323778.0 37 399716.0 38 559634.0 39 519638.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.29081984790472 17.545646179848056 11.559387193040914 28.604146779206314 2 16.68225959805428 23.782047278444313 30.355141561730097 29.180551561771313 3 22.32500910688487 23.78166683416783 28.37118806723845 25.52213599170885 4 16.459319252033872 17.381706400372583 29.79997825126886 36.35899609632469 5 14.246845562133368 36.176160917783776 34.09259443023239 15.484399089850475 6 36.72514200875212 29.896547690116726 15.606394887843441 17.771915413287715 7 26.57289137967166 29.53512562745565 21.847805169413423 22.044177823459272 8 29.036046144086296 30.680611640263304 21.932834465207897 18.350507750442503 9 28.453871289994602 12.723705197534594 17.475422507146803 41.347001005324 10 18.619323335469105 25.93678854938817 32.23092206694107 23.212966048201654 11 36.06139356104403 20.91543135881697 17.847116565272984 25.176058514866018 12 22.747777809129204 26.30645357137309 27.403401235239162 23.542367384258547 13 34.139325668860664 17.23682053841108 21.943613719708313 26.680240073019938 14 24.236868410982538 20.642621108887273 23.02566064941204 32.09484983071815 15 31.34787919752889 22.062597667179105 20.865624862287095 25.72389827300491 16 25.167498518645097 23.223079525218225 27.316469718062258 24.29295223807442 17 27.71501680137036 25.465069350236053 24.09822817589334 22.721685672500254 18 28.367447031853015 19.488067840823383 26.94785091783767 25.196634209485936 19 26.808418090505793 27.945027070195454 23.658973555001307 21.587581284297446 20 26.247072560551672 21.29752422716708 25.853629771286414 26.601773440994837 21 24.589952403250642 25.71511635095604 24.510566364224033 25.184364881569284 22 26.287177728031164 25.18163836425447 20.220423073057667 28.3107608346567 23 22.859977167002672 23.13446771248685 23.945701724712425 30.059853395798058 24 24.523279543796587 28.55028221039393 22.43112135633457 24.495316889474914 25 26.953113730329047 22.468848747086035 19.69081293650036 30.887224586084557 26 25.784293801896958 23.328621108253202 24.094772473715263 26.792312616134577 27 28.647073575069744 22.271873722935748 21.231295219368924 27.849757482625588 28 25.214578497860156 23.46757838023947 24.740101077703525 26.577742044196846 29 26.416084930380286 21.16551006322667 25.284072985698145 27.134332020694902 30 24.535453760644117 25.619529726489098 26.16359674555284 23.68141976731394 31 29.28593462635775 22.083426991316678 19.861030046537845 28.769608335787726 32 21.91346351079685 24.61531535501633 24.28229979833283 29.18892133585399 33 25.39281664139354 23.552829601861895 24.7284024162016 26.325951340542964 34 24.251388700868397 23.471953489419054 24.528003393562948 27.748654416149606 35 23.758332918543392 26.00193963173628 26.979903348131558 23.259824101588766 36 27.516615111183256 23.582884699704238 22.810138966783093 26.090361222329417 37 24.434572619996086 24.358737394216675 25.180687253563256 26.02600273222398 38 26.340249704600872 23.562055375566665 24.94687254197331 25.150822377859157 39 26.348968219270326 19.60695667722505 24.343297697329312 29.70077740617531 40 25.469285940967097 22.874973012234136 25.757472480404743 25.898268566394027 41 24.28917949899927 22.080129807587138 25.379501091716556 28.251189601697035 42 26.57935893237191 23.302972823280147 25.76124521947989 24.356423024868057 43 26.02929991595352 19.168082500609504 26.87287169168035 27.92974589175663 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 21.0 1 37.0 2 53.0 3 280.5 4 508.0 5 508.0 6 749.0 7 990.0 8 1046.5 9 1103.0 10 1286.5 11 1470.0 12 1470.0 13 2222.5 14 2975.0 15 4195.5 16 5416.0 17 4796.5 18 4177.0 19 4177.0 20 4189.0 21 4201.0 22 3718.0 23 3235.0 24 3957.0 25 4679.0 26 4679.0 27 5620.0 28 6561.0 29 8120.0 30 9679.0 31 12366.5 32 15054.0 33 15054.0 34 20153.5 35 25253.0 36 34703.0 37 44153.0 38 55897.5 39 67642.0 40 67642.0 41 80323.0 42 93004.0 43 113493.5 44 133983.0 45 177689.5 46 221396.0 47 221396.0 48 408727.0 49 596058.0 50 608786.0 51 621514.0 52 442069.0 53 262624.0 54 262624.0 55 237943.5 56 213263.0 57 209656.0 58 206049.0 59 196659.0 60 187269.0 61 187269.0 62 159876.5 63 132484.0 64 116493.0 65 100502.0 66 85264.5 67 70027.0 68 70027.0 69 57782.5 70 45538.0 71 38266.0 72 30994.0 73 23666.5 74 16339.0 75 16339.0 76 12971.5 77 9604.0 78 8331.0 79 7058.0 80 5513.5 81 3969.0 82 3969.0 83 3270.0 84 2571.0 85 2203.5 86 1836.0 87 1209.5 88 583.0 89 583.0 90 391.0 91 199.0 92 152.0 93 105.0 94 83.5 95 62.0 96 62.0 97 33.0 98 4.0 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3154207.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.943623577542745 #Duplication Level Percentage of deduplicated Percentage of total 1 83.19020116625319 32.39727879558622 2 8.567949704418572 6.6733401624039095 3 2.9068535574352827 3.3961023220740203 4 1.403214308973105 2.185849993890815 5 0.8358284616197238 1.6275094492357578 6 0.5782385373474 1.3511222361891626 7 0.4065043768447945 1.1081527404127083 8 0.31120298365709087 0.9695497481399947 9 0.22693495948670214 0.7953902674951536 >10 1.3312162891034727 9.322166924606998 >50 0.11070563538443945 3.013875593619238 >100 0.10353418130083783 8.690857776258852 >500 0.014595758315020866 3.8477920711599363 >1k 0.009537001171746504 6.751794618180304 >5k 0.0017415393444058834 4.4356460532420865 >10k+ 0.0017415393444058834 13.433571247504759 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 56111 1.7789257331557502 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 49709 1.5759587116508207 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG 32791 1.039595689185903 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA 31635 1.0029462238844817 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG 24131 0.7650417363223149 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 22229 0.7047413184993883 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG 18532 0.5875327776521959 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC 18408 0.5836015201285141 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC 16995 0.5388042065723652 No Hit ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 15253 0.4835763791025763 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC 14843 0.47057786632266047 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA 14351 0.4549796509867615 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 13803 0.4376060290272642 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGT 12097 0.3835195343869315 No Hit CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT 11650 0.3693479850878525 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCT 11520 0.365226505425928 No Hit CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA 10701 0.3392611835558034 No Hit ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC 10497 0.3327936308555526 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCT 10454 0.3314303721981468 No Hit GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC 10137 0.3213803025609923 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGT 10103 0.32030237711095055 No Hit CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC 9516 0.30169231125287593 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGT 9480 0.3005509784234199 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGC 8947 0.2836529118095293 No Hit GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 8805 0.2791509878711194 No Hit GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG 8095 0.25664136817907 No Hit AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC 7948 0.2519809257921246 No Hit TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 7460 0.23650952521505406 No Hit CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT 7414 0.23505115548852692 No Hit GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTT 6527 0.20692998271831875 No Hit GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG 5711 0.1810597719173155 No Hit ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG 5636 0.17868199518928213 No Hit TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCT 5434 0.17227784986844555 No Hit GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT 5414 0.17164377607430328 No Hit ACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG 5227 0.1657151860990734 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGG 5192 0.16460555695932447 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGT 5183 0.16432022375196048 No Hit GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA 5168 0.1638446684063538 No Hit CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT 5108 0.1619424470239271 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTC 5061 0.16045237360769285 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCT 5016 0.1590257075708728 No Hit ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG 5001 0.15855015222526614 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCTGT 4968 0.15750393046493144 No Hit TTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC 4154 0.13169712704334244 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACT 4037 0.12798779534761034 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGT 4023 0.1275439436917108 No Hit GGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA 3914 0.12408824151363561 No Hit AACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACA 3755 0.11904735485020483 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGTCT 3687 0.11689150395012121 No Hit ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT 3537 0.11213595049405443 No Hit ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 3510 0.11127995087196244 No Hit ACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATG 3243 0.10281506572016358 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 3.17036897071118E-5 0.0 0.0 0.0 6 0.0 3.17036897071118E-5 0.0 0.0 3.17036897071118E-5 7 0.0 3.17036897071118E-5 0.0 0.0 3.17036897071118E-5 8 0.0 3.17036897071118E-5 0.0 0.0 3.17036897071118E-5 9 0.0 3.17036897071118E-5 0.0 0.0 9.511106912133541E-5 10 0.0 3.17036897071118E-5 0.0 0.0 9.511106912133541E-5 11 0.0 3.17036897071118E-5 0.0 0.0 9.511106912133541E-5 12 0.0 3.17036897071118E-5 0.0 0.0 9.511106912133541E-5 13 0.0 3.17036897071118E-5 0.0 6.34073794142236E-5 9.511106912133541E-5 14 0.0 6.34073794142236E-5 0.0 2.2192582794978261E-4 9.511106912133541E-5 15 0.0 6.34073794142236E-5 0.0 2.8533320736400626E-4 9.511106912133541E-5 16 0.0 6.34073794142236E-5 0.0 8.559996220920187E-4 1.268147588284472E-4 17 0.0 6.34073794142236E-5 0.0 0.0015217771059413666 1.5851844853555903E-4 18 0.0 6.34073794142236E-5 0.0 0.0023460730383262733 1.5851844853555903E-4 19 0.0 6.34073794142236E-5 0.0 0.004406812869288541 1.5851844853555903E-4 20 0.0 6.34073794142236E-5 0.0 0.005738367836987237 1.5851844853555903E-4 21 0.0 6.34073794142236E-5 0.0 0.010271995465104225 1.9022213824267082E-4 22 0.0 6.34073794142236E-5 0.0 0.015439696887363448 1.9022213824267082E-4 23 0.0 6.34073794142236E-5 0.0 0.022699841830292052 2.536295176568944E-4 24 0.0 6.34073794142236E-5 0.0 0.035032577126358544 2.536295176568944E-4 25 0.0 6.34073794142236E-5 0.0 0.04314872169137916 2.8533320736400626E-4 26 0.0 6.34073794142236E-5 0.0 0.060332121512633764 2.8533320736400626E-4 27 0.0 6.34073794142236E-5 0.0 0.08854840535196326 2.8533320736400626E-4 28 0.0 6.34073794142236E-5 0.0 0.14453712137472272 2.8533320736400626E-4 29 0.0 9.511106912133541E-5 0.0 0.19206095224568331 2.8533320736400626E-4 30 0.0 9.511106912133541E-5 0.0 0.27249321303262597 2.8533320736400626E-4 31 0.0 9.511106912133541E-5 0.0 0.449463208977724 3.1703689707111805E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAAAGTA 915 0.0 20.420767 2 AAAAAGT 910 0.0 20.329672 1 TATACTA 70 1.2200536E-4 18.5 5 CTATACT 125 8.594725E-9 17.76 4 GGGCTGT 2760 0.0 16.422102 37 CGTTAAT 80 3.384906E-4 16.1875 2 GTACTCC 3055 0.0 16.047462 36 TACTCCT 3020 0.0 15.988409 37 TACCTGT 3845 0.0 15.733419 37 TGGGCTG 2605 0.0 15.6238 36 GCGTTAA 95 7.065921E-5 15.578948 1 TATTAAG 95 7.065921E-5 15.578948 2 TTAGAGT 310 0.0 15.5161295 4 GTATAGA 155 7.223207E-9 15.5161295 1 ATTACAC 180 2.0190782E-10 15.416666 3 TAGAGTG 325 0.0 15.369231 5 GTATTAC 85 5.3678366E-4 15.235294 1 TATACTG 135 3.978239E-7 15.074073 5 ATTAGAG 320 0.0 15.03125 3 AAAGTAC 1455 0.0 15.003436 1 >>END_MODULE