SRR2727176.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2727176.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5677213
Sequences flagged as poor quality	0
Sequence length	43
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	29541	0.5203433445248575	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC	24726	0.4355306027799204	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG	24214	0.4265120931696591	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	20260	0.35686524356229016	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	18231	0.3211258763763135	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA	15860	0.2793624265991077	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13653	0.24048771818143866	No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG	13074	0.23028905204014716	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG	11342	0.19978112499918535	No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT	10336	0.18206116275714862	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC	10021	0.17651266563364804	No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG	9156	0.16127631638974968	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGT	8605	0.15157084999276935	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGT	7577	0.1334633736659167	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA	7272	0.12809101930824157	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGC	7240	0.12752736245760024	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT	7136	0.12569547769301592	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG	6595	0.11616615406186098	No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6407	0.1128546700643432	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC	6305	0.11105801385292396	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGACGG	1995	16.598997	5
CAAGACG	2060	16.254854	4
ACCGTCG	1480	14.75	8
TACCGTC	1485	13.952862	7
ATACCGT	1530	13.905229	6
ACGAACG	1030	13.830096	15
TACTTAC	1320	13.734849	31
CGCAAGA	2410	13.6639	2
CGAACGA	1030	13.650485	16
TGTTACG	485	13.350515	24
CGGACCA	2445	13.316973	9
AACGAAC	1080	13.1898155	14
CGTCGTA	1575	13.155556	10
CCGTCGT	1590	13.1477995	9
TTAGAGT	1170	13.123932	4
GCAAGAC	2730	13.078755	3
ACGGACC	2435	13.067762	8
GTCCTAT	1530	13.058824	1
TCTTATA	6265	13.051876	37
GCGCAAG	2475	13.006061	1