##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727162.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4359155 Sequences flagged as poor quality 0 Sequence length 43 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.94190525457342 31.0 31.0 33.0 28.0 34.0 2 31.11627459909088 31.0 31.0 34.0 28.0 34.0 3 31.151162323890755 31.0 31.0 34.0 28.0 34.0 4 35.01171534391413 35.0 35.0 37.0 32.0 37.0 5 34.852603314174424 35.0 35.0 37.0 32.0 37.0 6 34.875516929313136 35.0 35.0 37.0 32.0 37.0 7 34.695851374865086 35.0 35.0 37.0 31.0 37.0 8 34.62264154406072 35.0 35.0 37.0 30.0 37.0 9 36.20833716626273 38.0 35.0 39.0 32.0 39.0 10 35.966165460966636 37.0 35.0 39.0 30.0 39.0 11 36.09364383693629 38.0 35.0 39.0 31.0 39.0 12 35.93679187824246 37.0 35.0 39.0 30.0 39.0 13 36.060393356051804 38.0 35.0 39.0 30.0 39.0 14 36.97159013616171 39.0 36.0 40.0 31.0 41.0 15 36.894623155175715 38.0 36.0 40.0 31.0 41.0 16 36.870739168485635 38.0 36.0 40.0 31.0 41.0 17 36.73339993645558 38.0 36.0 40.0 30.0 41.0 18 36.742817128549 38.0 36.0 40.0 31.0 41.0 19 36.75450838522604 39.0 35.0 40.0 30.0 41.0 20 36.592908946802766 38.0 35.0 40.0 30.0 41.0 21 36.45829639001137 38.0 35.0 40.0 30.0 41.0 22 36.371619499650734 38.0 35.0 40.0 30.0 41.0 23 36.14829731909051 38.0 34.0 40.0 29.0 41.0 24 36.010843844735966 38.0 34.0 40.0 29.0 41.0 25 35.863696977969354 38.0 34.0 40.0 27.0 41.0 26 35.568803816335965 38.0 34.0 40.0 27.0 41.0 27 35.70426240865489 38.0 34.0 40.0 27.0 41.0 28 35.56484135113342 38.0 34.0 40.0 27.0 41.0 29 35.44460933368967 38.0 34.0 40.0 27.0 41.0 30 35.60629273333937 38.0 34.0 40.0 27.0 41.0 31 35.55979083102115 38.0 34.0 40.0 27.0 41.0 32 35.43151390579138 38.0 34.0 40.0 27.0 41.0 33 35.3131994618223 38.0 34.0 40.0 26.0 41.0 34 35.370232992403345 38.0 34.0 40.0 26.0 41.0 35 35.05821334639397 38.0 33.0 40.0 25.0 41.0 36 34.90355768491829 38.0 33.0 40.0 25.0 41.0 37 34.74291210108381 38.0 33.0 40.0 24.0 41.0 38 34.57871169985926 38.0 33.0 40.0 24.0 41.0 39 34.51308338427975 38.0 33.0 40.0 24.0 41.0 40 34.379206291127524 37.0 33.0 40.0 24.0 41.0 41 34.17628118293568 37.0 32.0 40.0 23.0 41.0 42 34.01262262984454 37.0 32.0 40.0 23.0 41.0 43 33.61198512096954 37.0 31.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 9.0 12 11.0 13 19.0 14 31.0 15 96.0 16 245.0 17 504.0 18 895.0 19 1765.0 20 3643.0 21 6602.0 22 11597.0 23 18257.0 24 28695.0 25 41586.0 26 58559.0 27 78653.0 28 103421.0 29 131529.0 30 161920.0 31 195421.0 32 230667.0 33 271073.0 34 319933.0 35 376961.0 36 451275.0 37 553982.0 38 722343.0 39 589460.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.01330533096437 21.10645297081659 13.376514485032075 25.50372721318696 2 19.749355092902178 22.989570226339737 33.121350353451525 24.139724327306553 3 20.952822278629686 24.246534018634343 29.947868336868037 24.852775365867927 4 15.776979712811311 16.406092465168136 34.19378296940577 33.623144852614786 5 14.7911235090287 37.52419907069145 32.929960049596765 14.754717370683078 6 34.77896518935436 35.296817846578065 15.180946766059018 14.74327019800856 7 28.169427331673226 31.625808212830236 21.4136684747388 18.79109598075774 8 27.339679364463986 33.302417555696 20.268285940738515 19.0896171391015 9 27.807384688087485 13.482452447779444 19.478889830712603 39.231273033420464 10 17.254720238211306 26.3618522397116 32.400224355408334 23.98320316666877 11 36.91630602720022 21.648140522647164 20.677424867892974 20.758128582259637 12 21.603842946626123 25.811011537786566 28.757201797137288 23.82794371845002 13 30.32317043096655 18.91212861208193 25.07967713926208 25.68502381768944 14 22.924534686194917 21.17873762231442 24.72442480251333 31.172302888977338 15 26.01816177676637 27.673643171669738 21.793902717384448 24.514292334179448 16 24.824031262939723 25.952346268944325 24.668886515849977 24.554735952265975 17 24.191408656035403 26.21723705626435 25.022280694308876 24.56907359339138 18 24.42650009004039 24.310743710650343 26.892344961351455 24.370411237957814 19 24.87647261911999 25.536164692469065 26.29986774959826 23.287494938812685 20 24.54071947430179 24.225406070671955 26.03841799614834 25.195456458877924 21 25.372256779123475 25.558118488560282 25.83438762787742 23.23523710443882 22 25.158224472403486 24.721717855868857 25.324541109458142 24.795516562269523 23 23.56940737367678 24.68694047355508 26.33127291871934 25.4123792340488 24 23.95746423332045 25.76744804899115 25.9657663010377 24.309321416650704 25 24.84148877477401 24.778059050435232 25.242575682672445 25.13787649211831 26 24.227195408284405 25.79554982559693 25.930140130369306 24.04711463574936 27 25.469890380131012 25.217869059485153 25.015490387471885 24.296750172911953 28 23.773345981044493 25.888847723928148 26.06378988588385 24.274016409143513 29 23.993962132569273 25.75684966467125 26.42165740837387 23.82753079438561 30 24.393603806242265 25.88091040580112 26.004076478124777 23.721409309831838 31 24.81903029371518 25.688854835398146 25.22066776703283 24.271447103853845 32 23.731388308055116 25.687363720721102 25.209725279325923 25.37152269189786 33 23.3953598805273 24.977891357384628 26.22200862323088 25.404740138857186 34 24.63229685569795 25.278224793566643 26.364834469065677 23.724643881669728 35 24.969701696773804 25.185202177945037 26.29261863824526 23.552477487035905 36 23.68874242829172 25.808098129109887 26.14174077315443 24.361418669443964 37 23.926242586005774 25.301004437786684 26.67402283240674 24.098730143800807 38 23.823860358257505 24.395851948370726 27.216490351914537 24.56379734145723 39 23.927963102940822 24.038167947687107 26.99110263342322 25.04276631594885 40 24.26064225750174 24.354421900574767 27.448691317468636 23.936244524454857 41 22.777097854974187 24.57217052387447 28.164999868093705 24.485731753057646 42 23.94076374893758 24.78436761253041 27.696078712502768 23.57878992602924 43 22.74617443059492 23.938125622970507 27.805297127539625 25.510402818894946 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1273.0 1 1352.0 2 1431.0 3 2256.5 4 3082.0 5 3082.0 6 4922.0 7 6762.0 8 6881.5 9 7001.0 10 9502.0 11 12003.0 12 12003.0 13 19976.0 14 27949.0 15 37445.0 16 46941.0 17 40690.5 18 34440.0 19 34440.0 20 36342.5 21 38245.0 22 33624.0 23 29003.0 24 33558.0 25 38113.0 26 38113.0 27 44149.0 28 50185.0 29 55906.0 30 61627.0 31 69996.5 32 78366.0 33 78366.0 34 94254.0 35 110142.0 36 134342.5 37 158543.0 38 181716.0 39 204889.0 40 204889.0 41 222485.0 42 240081.0 43 254620.5 44 269160.0 45 298313.5 46 327467.0 47 327467.0 48 366122.0 49 404777.0 50 406302.0 51 407827.0 52 381610.5 53 355394.0 54 355394.0 55 338842.5 56 322291.0 57 313240.0 58 304189.0 59 282205.5 60 260222.0 61 260222.0 62 215392.5 63 170563.0 64 149548.0 65 128533.0 66 109196.0 67 89859.0 68 89859.0 69 75879.0 70 61899.0 71 54112.5 72 46326.0 73 34339.0 74 22352.0 75 22352.0 76 17608.5 77 12865.0 78 11206.0 79 9547.0 80 7820.0 81 6093.0 82 6093.0 83 5119.0 84 4145.0 85 3761.0 86 3377.0 87 2291.5 88 1206.0 89 1206.0 90 872.0 91 538.0 92 390.5 93 243.0 94 206.0 95 169.0 96 169.0 97 91.5 98 14.0 99 18.5 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4359155.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.691431512607124 #Duplication Level Percentage of deduplicated Percentage of total 1 81.75524193141409 38.17269279437247 2 9.260811068997127 8.648010515585467 3 3.1400970304582927 4.398468763217531 4 1.6031827918055341 2.9941959810311354 5 0.9409237691752812 2.19665388635159 6 0.6409051883703 1.7954868425319854 7 0.42712413449184233 1.3960126091105214 8 0.3354127624289588 1.2528721620324872 9 0.25547101608729467 1.0735476705986462 >10 1.4463506713553902 12.128809007033277 >50 0.09306255585216627 3.000648161598823 >100 0.07588535384680098 7.673190318451804 >500 0.01385866052155261 4.486658094607302 >1k 0.011424702106152622 9.37601368471058 >5k 9.934523570567495E-5 0.38908335804836136 >10k+ 1.4901785355851243E-4 1.0176561507180497 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 19791 0.4540100088205168 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 12726 0.2919373135389772 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11361 0.2606239053211001 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9186 0.21072891420470252 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT 7590 0.17411631382687698 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT 4479 0.10274927136107802 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.882067740192766E-5 2 0.0 0.0 0.0 0.0 6.882067740192766E-5 3 0.0 0.0 0.0 0.0 6.882067740192766E-5 4 0.0 0.0 0.0 0.0 9.176090320257022E-5 5 0.0 0.0 0.0 0.0 9.176090320257022E-5 6 2.2940225800642555E-5 0.0 0.0 0.0 1.1470112900321277E-4 7 2.2940225800642555E-5 0.0 0.0 0.0 1.1470112900321277E-4 8 2.2940225800642555E-5 0.0 0.0 0.0 1.3764135480385533E-4 9 2.2940225800642555E-5 0.0 0.0 0.0 1.8352180640514044E-4 10 2.2940225800642555E-5 0.0 0.0 2.2940225800642555E-5 1.8352180640514044E-4 11 2.2940225800642555E-5 0.0 0.0 4.588045160128511E-5 1.8352180640514044E-4 12 2.2940225800642555E-5 0.0 0.0 4.588045160128511E-5 2.06462032205783E-4 13 2.2940225800642555E-5 0.0 0.0 6.882067740192766E-5 2.2940225800642555E-4 14 2.2940225800642555E-5 0.0 0.0 1.1470112900321277E-4 3.441033870096383E-4 15 2.2940225800642555E-5 0.0 0.0 1.8352180640514044E-4 3.670436128102809E-4 16 4.588045160128511E-5 0.0 0.0 5.276251934147788E-4 4.3586429021220854E-4 17 4.588045160128511E-5 0.0 0.0 0.0012617124190353406 4.3586429021220854E-4 18 4.588045160128511E-5 0.0 0.0 0.0015599353544436937 4.8174474181349365E-4 19 4.588045160128511E-5 0.0 0.0 0.0019269789672539746 4.8174474181349365E-4 20 4.588045160128511E-5 0.0 0.0 0.0023857834832668257 5.046849676141362E-4 21 4.588045160128511E-5 0.0 0.0 0.0034410338700963834 5.505654192154213E-4 22 4.588045160128511E-5 0.0 0.0 0.005551534643755499 5.735056450160639E-4 23 4.588045160128511E-5 0.0 0.0 0.008304361739832605 6.652665482186341E-4 24 4.588045160128511E-5 0.0 0.0 0.012525363287150836 6.652665482186341E-4 25 4.588045160128511E-5 0.0 0.0 0.015232309931626657 6.882067740192766E-4 26 4.588045160128511E-5 0.0 0.0 0.021426170897800148 6.882067740192766E-4 27 4.588045160128511E-5 0.0 0.0 0.05494184079253892 7.340872256205618E-4 28 4.588045160128511E-5 0.0 0.0 0.09823004687835142 7.570274514212043E-4 29 4.588045160128511E-5 0.0 0.0 0.14876736431716697 7.799676772218469E-4 30 4.588045160128511E-5 0.0 0.0 0.2256630012009208 7.799676772218469E-4 31 4.588045160128511E-5 0.0 0.0 0.4747020924926964 7.799676772218469E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGACGG 1795 0.0 18.036213 5 CAAGACG 1890 0.0 17.227514 4 CTTATAC 2670 0.0 15.104869 37 TATTCCG 160 1.0988515E-8 15.031251 5 GCGCAAG 2145 0.0 14.662004 1 CGCAAGA 2145 0.0 14.662004 2 TCGTTAC 720 0.0 14.645833 23 TATCTAG 1560 0.0 14.23077 1 ACGGACC 2250 0.0 13.977778 8 TCGTTTA 1265 0.0 13.89328 30 TACCGTC 1310 0.0 13.839695 7 TCTAGAT 1005 0.0 13.805971 2 TTCGGGC 1230 0.0 13.686992 35 GCAAGAC 2535 0.0 13.646943 3 CGAACGT 830 0.0 13.596386 4 CGCTTCG 1240 0.0 13.576612 32 CGGACCA 2335 0.0 13.54818 9 TCTTATA 3995 0.0 13.521902 37 AGACGGA 2345 0.0 13.490404 6 GACGGAC 2295 0.0 13.381263 7 >>END_MODULE