##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727143.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4108959 Sequences flagged as poor quality 0 Sequence length 43 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.604683570704893 31.0 31.0 34.0 30.0 34.0 2 31.856693873071013 31.0 31.0 34.0 30.0 34.0 3 31.97067408070998 33.0 31.0 34.0 30.0 34.0 4 35.69408236976811 37.0 35.0 37.0 33.0 37.0 5 35.30437417360456 37.0 35.0 37.0 33.0 37.0 6 35.31747286843213 37.0 35.0 37.0 32.0 37.0 7 35.272451246167215 37.0 35.0 37.0 32.0 37.0 8 35.22126942614906 37.0 35.0 37.0 32.0 37.0 9 37.04673397811952 39.0 37.0 39.0 33.0 39.0 10 36.80847241357239 39.0 37.0 39.0 33.0 39.0 11 36.926523968722975 39.0 37.0 39.0 33.0 39.0 12 36.81320913642604 39.0 37.0 39.0 33.0 39.0 13 36.94250198164547 39.0 37.0 39.0 33.0 39.0 14 37.978231712703874 40.0 37.0 41.0 33.0 41.0 15 37.9832035316001 40.0 37.0 41.0 33.0 41.0 16 37.92080646217205 39.0 37.0 41.0 33.0 41.0 17 37.850015295845004 39.0 37.0 41.0 33.0 41.0 18 37.865382691820486 39.0 37.0 41.0 33.0 41.0 19 37.9137036899127 40.0 37.0 41.0 33.0 41.0 20 37.791678135508285 39.0 37.0 41.0 33.0 41.0 21 37.780876372823386 39.0 37.0 41.0 33.0 41.0 22 37.69032740409432 39.0 37.0 41.0 32.0 41.0 23 37.624599320655186 39.0 37.0 40.0 32.0 41.0 24 37.525682782427374 39.0 37.0 41.0 32.0 41.0 25 37.49529625386868 39.0 36.0 40.0 32.0 41.0 26 37.35368520347855 39.0 36.0 40.0 32.0 41.0 27 37.1650880429812 39.0 36.0 40.0 31.0 41.0 28 37.05529186346225 39.0 36.0 40.0 31.0 41.0 29 36.97197635702863 39.0 36.0 40.0 31.0 41.0 30 36.92295226114449 39.0 36.0 40.0 31.0 41.0 31 36.87565853054265 39.0 36.0 40.0 31.0 41.0 32 36.76288179074067 39.0 35.0 40.0 30.0 41.0 33 36.73405721497829 39.0 35.0 40.0 30.0 41.0 34 36.725582075654685 39.0 35.0 40.0 30.0 41.0 35 36.62672978727702 39.0 35.0 40.0 30.0 41.0 36 36.55019556048138 39.0 35.0 40.0 30.0 41.0 37 36.42619700026211 38.0 35.0 40.0 30.0 41.0 38 36.38337058121047 38.0 35.0 40.0 30.0 41.0 39 36.26957849907969 38.0 35.0 40.0 30.0 41.0 40 36.21285853667559 38.0 35.0 40.0 30.0 41.0 41 36.158524580070036 38.0 35.0 40.0 30.0 41.0 42 36.105032442523765 38.0 35.0 40.0 29.0 41.0 43 34.79319579484731 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 7.0 11 7.0 12 2.0 13 7.0 14 5.0 15 8.0 16 12.0 17 33.0 18 89.0 19 236.0 20 551.0 21 1126.0 22 2182.0 23 4178.0 24 7287.0 25 12210.0 26 19011.0 27 29517.0 28 43321.0 29 61697.0 30 84219.0 31 112832.0 32 147652.0 33 194029.0 34 255620.0 35 342641.0 36 471433.0 37 664972.0 38 992012.0 39 662063.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.96291566793439 18.948400312585257 13.136417277466142 25.952266742014217 2 18.050240949106573 21.172369936034894 36.29892632172771 24.478462793130813 3 19.602799638545918 23.04982843586417 30.670250056036092 26.677121869553822 4 14.843297292574592 16.06311963687153 34.50178013457909 34.59180293597478 5 15.071432934716555 36.06429268337796 34.09223601403665 14.772038367868845 6 34.28853877587973 34.539745955119045 15.699815938781574 15.47189933021965 7 28.252484388381582 31.08074332209204 21.82837550824917 18.838396781277204 8 25.805173524486374 35.590450038562075 20.084065088018644 18.520311348932907 9 26.81267931853299 15.0890529693774 20.144567030238072 37.95370068185153 10 16.933121016783083 27.01141578682094 33.39123120965675 22.66423198673922 11 35.01743385611781 22.283137894537276 21.8481372045815 20.851291044763407 12 21.041460866365423 25.121691406509534 30.789063604674567 23.04778412245048 13 30.33420387012866 20.45418316415423 24.821956120759538 24.389656844957567 14 21.756848875834486 21.23939421152657 26.572910559584557 30.430846353054385 15 24.91677332385161 27.781197135332818 23.480010387059107 23.822019153756465 16 23.47808775896766 26.804842783780515 25.780082011039777 23.936987446212047 17 23.457644624830767 26.533143796275404 26.13304245673904 23.876169122154785 18 23.296070853955953 25.977187896009667 27.150794154918557 23.57594709511582 19 24.593066029619667 25.572876244323684 27.483749533641 22.350308192415646 20 23.74421355871402 25.319478729283983 27.399908346615288 23.536399365386707 21 23.346789296267012 25.950465799245016 28.051752280808838 22.650992623679137 22 24.09761207157336 25.2267545137345 26.86828951079823 23.80734390389391 23 23.328779868574983 25.642212540937987 27.377907640353676 23.651099950133357 24 23.18166231398269 25.494900289830102 27.517334682580184 23.80610271360702 25 23.64289835941415 25.319138010381703 27.143152316681668 23.894811313522478 26 23.207216231653806 25.671246658825265 27.413488428577654 23.708048680943275 27 23.83445539368974 26.08040138633654 26.86782710657371 23.217316113400013 28 23.242894368135577 26.27497621660377 26.586320282095784 23.89580913316487 29 23.22683190559945 26.32620573726825 27.394359495920988 23.05260286121132 30 23.98887406761664 25.78684771495651 26.841397054582437 23.38288116284441 31 23.560176677353073 25.39947466012681 27.456784066231858 23.583564596288255 32 22.994826670210145 26.093032322785408 27.18075308125489 23.731387925749566 33 23.058273397227865 25.233836599489067 27.34751064685727 24.360379356425803 34 23.478550163192185 25.366765645507776 27.976453403404612 23.178230787895426 35 23.323839444491902 25.292780969583777 27.572506807685354 23.810872778238963 36 22.97494328855557 24.99319170622048 28.080859409889463 23.951005595334486 37 22.642547662315444 24.75648941739258 28.46492262395415 24.136040296337832 38 22.895020368906092 24.315915539678056 28.658207589805595 24.13085650161026 39 22.19637625977772 24.557631263782383 29.457826179331555 23.788166297108344 40 22.82181447904445 24.157262216537084 29.357800844447464 23.663122459971007 41 22.031395299880092 24.4333662127074 29.518303784486534 24.016934702925973 42 21.613722599811776 24.802754176909527 29.434340912138573 24.149182311140123 43 21.199262392250688 24.507837629920378 29.219614992507836 25.0732849853211 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 6585.0 1 5273.5 2 3962.0 3 6042.0 4 8122.0 5 8122.0 6 8925.0 7 9728.0 8 8722.5 9 7717.0 10 10569.5 11 13422.0 12 13422.0 13 20527.5 14 27633.0 15 32410.0 16 37187.0 17 35308.0 18 33429.0 19 33429.0 20 38676.0 21 43923.0 22 39387.0 23 34851.0 24 40832.0 25 46813.0 26 46813.0 27 55138.0 28 63463.0 29 71908.5 30 80354.0 31 92142.0 32 103930.0 33 103930.0 34 116616.0 35 129302.0 36 144852.5 37 160403.0 38 176934.5 39 193466.0 40 193466.0 41 213065.5 42 232665.0 43 251984.5 44 271304.0 45 293117.5 46 314931.0 47 314931.0 48 334012.0 49 353093.0 50 361375.0 51 369657.0 52 360414.0 53 351171.0 54 351171.0 55 328778.5 56 306386.0 57 283072.0 58 259758.0 59 234722.0 60 209686.0 61 209686.0 62 182200.5 63 154715.0 64 129951.0 65 105187.0 66 86844.0 67 68501.0 68 68501.0 69 55414.0 70 42327.0 71 34060.5 72 25794.0 73 20787.0 74 15780.0 75 15780.0 76 12926.0 77 10072.0 78 8100.0 79 6128.0 80 4848.0 81 3568.0 82 3568.0 83 2872.0 84 2176.0 85 1675.5 86 1175.0 87 825.0 88 475.0 89 475.0 90 286.5 91 98.0 92 56.5 93 15.0 94 9.0 95 3.0 96 3.0 97 2.5 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4108959.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.41557301774177 #Duplication Level Percentage of deduplicated Percentage of total 1 81.18765224205889 47.42623227685018 2 9.980441423323617 11.660264094269108 3 3.2512803120423617 5.697762074077704 4 1.586552641718362 3.7071752675516025 5 0.9356869671199886 2.732934517477352 6 0.600044303368571 2.1031159090384053 7 0.4314961182762436 1.7644265102826633 8 0.3407225881817307 1.5922804182979078 9 0.23255473632397666 1.2226336362319452 >10 1.3536638061425235 14.210561103395802 >50 0.07054554205967935 2.7793732272597995 >100 0.027814201111641026 2.777389422476654 >500 8.769590642177943E-4 0.3392761567985696 >1k 5.011194061078849E-4 0.6524015438255646 >5k 4.175995050898868E-5 0.2261840829475963 >10k+ 1.2527985152696605E-4 1.1079897592191352 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 17515 0.42626368381869956 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 15417 0.37520452260536064 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 12488 0.30392126083516535 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9272 0.2256532615681977 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.867412889736792E-5 2 0.0 0.0 0.0 0.0 4.867412889736792E-5 3 0.0 0.0 0.0 2.433706444868396E-5 4.867412889736792E-5 4 0.0 0.0 0.0 2.433706444868396E-5 4.867412889736792E-5 5 0.0 0.0 0.0 2.433706444868396E-5 4.867412889736792E-5 6 0.0 0.0 0.0 4.867412889736792E-5 7.301119334605188E-5 7 0.0 0.0 0.0 4.867412889736792E-5 7.301119334605188E-5 8 0.0 0.0 0.0 4.867412889736792E-5 7.301119334605188E-5 9 0.0 0.0 0.0 4.867412889736792E-5 9.734825779473584E-5 10 0.0 0.0 0.0 7.301119334605188E-5 9.734825779473584E-5 11 0.0 0.0 0.0 7.301119334605188E-5 9.734825779473584E-5 12 0.0 0.0 0.0 9.734825779473584E-5 9.734825779473584E-5 13 2.433706444868396E-5 0.0 0.0 9.734825779473584E-5 9.734825779473584E-5 14 2.433706444868396E-5 0.0 0.0 1.216853222434198E-4 2.920447733842075E-4 15 4.867412889736792E-5 0.0 0.0 1.216853222434198E-4 3.650559667302594E-4 16 4.867412889736792E-5 0.0 0.0 2.1903358003815565E-4 3.650559667302594E-4 17 4.867412889736792E-5 0.0 0.0 2.6770770893552357E-4 3.650559667302594E-4 18 4.867412889736792E-5 0.0 0.0 3.4071890228157546E-4 4.380671600763113E-4 19 4.867412889736792E-5 0.0 0.0 4.380671600763113E-4 4.380671600763113E-4 20 4.867412889736792E-5 0.0 0.0 6.57100740114467E-4 4.380671600763113E-4 21 4.867412889736792E-5 0.0 0.0 9.491455134986744E-4 4.867412889736792E-4 22 4.867412889736792E-5 0.0 0.0 0.0015575721247157734 5.110783534223632E-4 23 4.867412889736792E-5 0.0 0.0 0.0022876840581762922 5.84089546768415E-4 24 4.867412889736792E-5 0.0 0.0 0.0037965820539946978 5.84089546768415E-4 25 4.867412889736792E-5 0.0 0.0 0.005451502436505207 6.32763675665783E-4 26 4.867412889736792E-5 0.0 0.0 0.00958880339278148 6.57100740114467E-4 27 4.867412889736792E-5 0.0 0.0 0.035726810610668056 6.57100740114467E-4 28 4.867412889736792E-5 0.0 0.0 0.10866499276337388 6.57100740114467E-4 29 4.867412889736792E-5 0.0 0.0 0.20968814728986102 6.57100740114467E-4 30 4.867412889736792E-5 0.0 0.0 0.33378283891370053 6.57100740114467E-4 31 4.867412889736792E-5 0.0 0.0 0.72324888128599 6.57100740114467E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5525 0.0 22.769232 1 CTTATAC 3425 0.0 17.3927 37 GTATCAA 8055 0.0 15.479827 2 TCTTATA 5510 0.0 14.77314 37 TCGTTAC 885 0.0 14.423728 23 CTCGTTA 975 0.0 14.230769 22 GGACCGT 265 1.8189894E-12 13.264152 6 TACTTAC 1905 0.0 13.207349 31 GTACTAC 240 8.185452E-11 13.104167 1 CCGCGTA 85 0.009410121 13.058824 9 CTCTTAT 8485 0.0 12.427814 37 TAATACG 105 0.0026455673 12.333333 4 AGTGTAC 2295 0.0 12.333333 27 GTACTTA 2170 0.0 12.191244 30 TACGGAT 1510 0.0 12.12914 27 GTGTACT 2230 0.0 12.112107 28 GGAGTGT 2170 0.0 12.020738 6 ACGGATG 1540 0.0 12.012986 28 ATACCGA 170 5.3173153E-6 11.970589 6 ATACCCG 125 7.2256546E-4 11.84 5 >>END_MODULE