##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727142.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4952290 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.611563337365137 31.0 31.0 34.0 30.0 34.0 2 31.863217622554416 31.0 31.0 34.0 30.0 34.0 3 31.98049124748349 33.0 31.0 34.0 30.0 34.0 4 35.70639926175567 37.0 35.0 37.0 33.0 37.0 5 35.306903472938785 37.0 35.0 37.0 33.0 37.0 6 35.31599663993829 37.0 35.0 37.0 32.0 37.0 7 35.270570584517465 37.0 35.0 37.0 32.0 37.0 8 35.21982315252136 37.0 35.0 37.0 32.0 37.0 9 37.0552617072102 39.0 37.0 39.0 33.0 39.0 10 36.82152923193109 39.0 37.0 39.0 33.0 39.0 11 36.93917500792563 39.0 37.0 39.0 33.0 39.0 12 36.817319866162926 39.0 37.0 39.0 33.0 39.0 13 36.944207629197805 39.0 37.0 39.0 33.0 39.0 14 38.00368980814936 40.0 37.0 41.0 33.0 41.0 15 38.00631021204332 40.0 37.0 41.0 33.0 41.0 16 37.95469913918611 40.0 37.0 41.0 33.0 41.0 17 37.857836273723876 39.0 37.0 41.0 33.0 41.0 18 37.873060543708064 39.0 37.0 41.0 33.0 41.0 19 37.92036997025618 40.0 37.0 41.0 33.0 41.0 20 37.800313592297705 39.0 37.0 41.0 33.0 41.0 21 37.79349250548736 39.0 37.0 41.0 33.0 41.0 22 37.70387477308478 39.0 37.0 41.0 32.0 41.0 23 37.649740625044174 39.0 37.0 40.0 32.0 41.0 24 37.5474479483229 39.0 37.0 41.0 32.0 41.0 25 37.52760238192836 39.0 37.0 40.0 32.0 41.0 26 37.396252036936446 39.0 36.0 40.0 32.0 41.0 27 37.21893770356744 39.0 36.0 40.0 31.0 41.0 28 37.11993461610689 39.0 36.0 40.0 31.0 41.0 29 37.04497777795727 39.0 36.0 40.0 31.0 41.0 30 36.998691514430696 39.0 36.0 40.0 31.0 41.0 31 36.96982991706867 39.0 36.0 40.0 31.0 41.0 32 36.87869127211856 39.0 36.0 40.0 30.0 41.0 33 36.86194831078148 39.0 36.0 40.0 30.0 41.0 34 36.86185158785128 39.0 36.0 40.0 30.0 41.0 35 36.77858223165445 39.0 35.0 40.0 30.0 41.0 36 36.705011418959714 39.0 35.0 40.0 30.0 41.0 37 36.58148856387651 39.0 35.0 40.0 30.0 41.0 38 36.54709901883775 39.0 35.0 40.0 30.0 41.0 39 36.45691407409502 38.0 35.0 40.0 30.0 41.0 40 36.40768977584108 38.0 35.0 40.0 30.0 41.0 41 36.36185603024055 38.0 35.0 40.0 30.0 41.0 42 36.31427258904466 38.0 35.0 40.0 30.0 41.0 43 34.98034707175872 38.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 3.0 12 4.0 13 3.0 14 2.0 15 9.0 16 17.0 17 42.0 18 80.0 19 223.0 20 524.0 21 1174.0 22 2311.0 23 4480.0 24 7922.0 25 13082.0 26 21137.0 27 33006.0 28 49214.0 29 71045.0 30 98495.0 31 132349.0 32 174491.0 33 229186.0 34 305494.0 35 408753.0 36 562505.0 37 802562.0 38 1217548.0 39 816625.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.19395471589911 18.658196511109 12.678175147255107 26.469673625736778 2 18.293112883130835 20.56337573122737 35.88418691150962 25.259324474132168 3 19.770792905908177 22.367591558652663 29.99341718679641 27.868198348642746 4 15.040355068059421 15.604982745356189 34.06674487964154 35.28791730694285 5 15.43433441902635 35.465249409868974 33.970163298191345 15.130252872913339 6 35.32319391634981 34.119912202233714 15.33835861793231 15.218535263484165 7 29.15947975583013 30.21438566804448 21.34194483764077 19.28418973848462 8 26.120764333268042 35.13950111968403 19.742745275418038 18.996989271629893 9 26.5956557471392 14.904397763458926 19.703450322981894 38.79649616641998 10 17.095242806863087 26.49852896336846 33.38770548574498 23.01852274402347 11 35.685672688796494 21.69105605689489 21.59524179722916 21.02802945707945 12 21.30212487556262 24.523079221935713 30.651759085190893 23.52303681731078 13 30.61418051043053 19.91961294673777 24.373855327535342 25.09235121529636 14 22.202354870171174 20.544798466971844 25.701281629306845 31.551565033550133 15 25.023817264336294 27.47646038499361 22.70062940579005 24.799092944880044 16 24.39731921999721 26.244081021103366 24.7597979924439 24.59880176645552 17 23.980259637460648 26.178131732996253 25.63922952815768 24.202379101385418 18 24.012305418301434 25.562335808282633 26.34472133093983 24.080637442476107 19 24.903105432032454 25.283656651771203 26.51987262458378 23.293365291612567 20 24.41343297747103 25.03336840128506 26.50686853960491 24.046330081639 21 24.06385732661052 25.37880455304516 26.824115712125096 23.73322240821923 22 24.719069359831515 24.898885162217884 26.074401943343382 24.307643534607223 23 24.134127847924898 25.200583972263335 26.237801098077856 24.427487081733908 24 24.01117462830327 25.18842797978309 26.287414509247238 24.512982882666403 25 24.49272962609217 24.914473910049693 26.078743369229183 24.51405309462895 26 24.065715053036072 25.270834300899182 26.302861908329277 24.360588737735473 27 24.402751050524103 25.587415115027596 25.933234927679923 24.076598906768385 28 24.152462800037963 25.557550143468983 25.84967762388713 24.440309432605925 29 24.091743415672344 25.73153026175769 26.31624965420038 23.860476668369582 30 24.50442118696603 25.432436307243723 25.970954851190054 24.092187654600195 31 24.265117753604898 24.983149209759524 26.41892942456924 24.332803612066336 32 23.81312483719653 25.457858889523838 26.28083169604365 24.448184577235985 33 23.838547419476647 24.981877071011592 26.344398248083213 24.83517726142855 34 24.270428428060555 24.91205078862506 26.71251077784217 24.105010005472217 35 23.988195360126323 24.896684160257173 26.663684881135797 24.451435598480703 36 23.82025285272066 24.599286390740446 26.927865694456504 24.65259506208239 37 23.581211924180533 24.256858948082606 27.40249460350666 24.759434524230205 38 23.597022791476267 24.099315670124327 27.62225152404241 24.681410014356995 39 23.103271415850042 24.127141181150538 28.26692297906625 24.502664423933172 40 23.444063251546254 23.895268653491616 28.251293845877363 24.409374249084767 41 22.859081354282566 24.083726922292513 28.38202124673636 24.675170476688564 42 22.485395645246946 24.337023881880906 28.394480129394683 24.783100343477464 43 22.29746238608805 24.043745418786056 28.269911495489964 25.388880699635923 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3376.0 1 2888.0 2 2400.0 3 3926.5 4 5453.0 5 5453.0 6 6313.0 7 7173.0 8 6447.5 9 5722.0 10 7764.5 11 9807.0 12 9807.0 13 15255.5 14 20704.0 15 24503.0 16 28302.0 17 27517.0 18 26732.0 19 26732.0 20 31898.5 21 37065.0 22 35478.5 23 33892.0 24 40420.0 25 46948.0 26 46948.0 27 56071.0 28 65194.0 29 74925.5 30 84657.0 31 98178.0 32 111699.0 33 111699.0 34 128080.5 35 144462.0 36 164808.0 37 185154.0 38 206315.0 39 227476.0 40 227476.0 41 251826.0 42 276176.0 43 302357.0 44 328538.0 45 354911.0 46 381284.0 47 381284.0 48 405074.5 49 428865.0 50 439538.0 51 450211.0 52 444819.5 53 439428.0 54 439428.0 55 417821.0 56 396214.0 57 367863.5 58 339513.0 59 308795.5 60 278078.0 61 278078.0 62 243356.0 63 208634.0 64 176645.0 65 144656.0 66 118839.5 67 93023.0 68 93023.0 69 75519.5 70 58016.0 71 46383.5 72 34751.0 73 28126.5 74 21502.0 75 21502.0 76 17159.0 77 12816.0 78 10114.5 79 7413.0 80 5543.5 81 3674.0 82 3674.0 83 2813.0 84 1952.0 85 1393.0 86 834.0 87 605.0 88 376.0 89 376.0 90 233.0 91 90.0 92 57.0 93 24.0 94 15.0 95 6.0 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4952290.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.66406481979381 #Duplication Level Percentage of deduplicated Percentage of total 1 80.74903616979012 47.37066692000441 2 9.971479472622653 11.69935036262357 3 3.4376037626879676 6.04991429877282 4 1.674405442805666 3.929097177254685 5 0.9646181722458517 2.829421149149083 6 0.6295849259355004 2.216040654278716 7 0.44129909398749273 1.8121879058218986 8 0.3303533523659123 1.550389638130405 9 0.2564549311966404 1.3540219836367924 >10 1.4509924768122124 15.246311600596348 >50 0.07384021981729368 2.8828793254592333 >100 0.019643156635485125 1.8445159347977185 >500 3.099709582025981E-4 0.1265414159212866 >1k 2.4108772480987875E-4 0.2734079882956293 >5k 6.888220708726931E-5 0.3182418876442771 >10k+ 6.888220708726931E-5 0.4970117576129498 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 13285 0.26825973438550654 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 11314 0.2284599649858954 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9129 0.18433896237902062 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6622 0.13371591728271165 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.0385357077230936E-5 2 0.0 0.0 0.0 0.0 4.0385357077230936E-5 3 0.0 0.0 0.0 0.0 4.0385357077230936E-5 4 0.0 0.0 0.0 0.0 6.057803561584641E-5 5 0.0 0.0 0.0 0.0 6.057803561584641E-5 6 2.0192678538615468E-5 0.0 0.0 0.0 1.2115607123169282E-4 7 2.0192678538615468E-5 0.0 0.0 0.0 1.2115607123169282E-4 8 2.0192678538615468E-5 0.0 0.0 0.0 1.4134874977030827E-4 9 2.0192678538615468E-5 0.0 0.0 2.0192678538615468E-5 1.6154142830892375E-4 10 6.057803561584641E-5 0.0 0.0 4.0385357077230936E-5 1.6154142830892375E-4 11 6.057803561584641E-5 0.0 0.0 4.0385357077230936E-5 1.6154142830892375E-4 12 6.057803561584641E-5 0.0 0.0 4.0385357077230936E-5 1.6154142830892375E-4 13 6.057803561584641E-5 2.0192678538615468E-5 0.0 4.0385357077230936E-5 1.8173410684753922E-4 14 6.057803561584641E-5 2.0192678538615468E-5 0.0 4.0385357077230936E-5 3.230828566178475E-4 15 6.057803561584641E-5 2.0192678538615468E-5 0.0 8.077071415446187E-5 4.442389278495403E-4 16 6.057803561584641E-5 2.0192678538615468E-5 0.0 1.2115607123169282E-4 5.048169634653867E-4 17 6.057803561584641E-5 2.0192678538615468E-5 0.0 1.6154142830892375E-4 5.048169634653867E-4 18 6.057803561584641E-5 2.0192678538615468E-5 0.0 2.019267853861547E-4 5.653949990812331E-4 19 6.057803561584641E-5 2.0192678538615468E-5 0.0 2.4231214246338563E-4 5.855876776198486E-4 20 6.057803561584641E-5 2.0192678538615468E-5 0.0 2.625048210020011E-4 5.855876776198486E-4 21 6.057803561584641E-5 2.0192678538615468E-5 0.0 4.2404624931092485E-4 6.05780356158464E-4 22 6.057803561584641E-5 2.0192678538615468E-5 0.0 7.471291059287724E-4 6.46165713235695E-4 23 6.057803561584641E-5 2.0192678538615468E-5 0.0 0.0010702119625466198 8.480924986218497E-4 24 6.057803561584641E-5 2.0192678538615468E-5 0.0 0.002160616603631855 8.480924986218497E-4 25 6.057803561584641E-5 2.0192678538615468E-5 0.0 0.0033115992803329367 8.480924986218497E-4 26 6.057803561584641E-5 2.0192678538615468E-5 0.0 0.006481849810895566 8.480924986218497E-4 27 6.057803561584641E-5 2.0192678538615468E-5 0.0 0.027199537991515036 8.480924986218497E-4 28 6.057803561584641E-5 2.0192678538615468E-5 0.0 0.08646504950235144 8.480924986218497E-4 29 6.057803561584641E-5 2.0192678538615468E-5 0.0 0.16039044563222266 8.480924986218497E-4 30 6.057803561584641E-5 2.0192678538615468E-5 0.0 0.25345850101670137 8.480924986218497E-4 31 6.057803561584641E-5 2.0192678538615468E-5 0.0 0.5544909526703807 8.480924986218497E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3500 0.0 25.054287 1 GTATCAA 5230 0.0 16.87285 2 CTTATAC 3760 0.0 15.5970745 37 TCTTATA 5705 0.0 14.333041 37 TACTTAC 1515 0.0 11.844885 31 TATCAAC 7655 0.0 11.793598 3 TAGGCGG 190 1.4364578E-6 11.684211 5 GTACTTA 1615 0.0 11.569659 30 TCAACGC 7605 0.0 11.530572 5 AGTGTAC 1750 0.0 11.522858 27 TCGTTAC 695 0.0 11.446043 23 ATCAACG 7695 0.0 11.443794 4 CTCTTAT 8475 0.0 11.416519 37 TATACTG 795 0.0 11.402516 5 CAACGCA 7835 0.0 11.168475 6 TAGATCG 135 0.0013763661 10.962963 5 GGAGTGT 1860 0.0 10.94086 6 TCTCTTA 11930 0.0 10.73093 37 TTAATAC 835 0.0 10.63473 3 AACGCAG 8250 0.0 10.62909 7 >>END_MODULE