##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727123.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4285299 Sequences flagged as poor quality 0 Sequence length 43 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.4189856997143 31.0 31.0 34.0 30.0 34.0 2 31.645750039845527 31.0 31.0 34.0 30.0 34.0 3 31.731727471058612 31.0 31.0 34.0 30.0 34.0 4 35.47039938170008 37.0 35.0 37.0 33.0 37.0 5 34.99586329915369 37.0 35.0 37.0 32.0 37.0 6 35.01529951585642 37.0 35.0 37.0 32.0 37.0 7 34.9733563515638 36.0 35.0 37.0 32.0 37.0 8 34.934897891605694 36.0 35.0 37.0 32.0 37.0 9 36.668383933069784 38.0 35.0 39.0 32.0 39.0 10 36.413609412085364 38.0 35.0 39.0 32.0 39.0 11 36.538894018830426 38.0 35.0 39.0 32.0 39.0 12 36.41334221952774 38.0 35.0 39.0 32.0 39.0 13 36.518899614706 38.0 35.0 39.0 32.0 39.0 14 37.520162070371285 39.0 37.0 40.0 32.0 41.0 15 37.45950609280706 39.0 36.0 40.0 32.0 41.0 16 37.386772311570326 39.0 36.0 40.0 32.0 41.0 17 37.351963305244276 39.0 36.0 40.0 32.0 41.0 18 37.351887231206035 39.0 36.0 40.0 32.0 41.0 19 37.40039983207706 39.0 36.0 40.0 32.0 41.0 20 37.296335681594215 39.0 36.0 40.0 32.0 41.0 21 37.22420839245989 39.0 36.0 40.0 31.0 41.0 22 37.149722341428216 39.0 36.0 40.0 31.0 41.0 23 37.073406313071736 39.0 36.0 40.0 31.0 41.0 24 36.95077076302027 39.0 36.0 40.0 31.0 41.0 25 36.90815460018076 39.0 36.0 40.0 31.0 41.0 26 36.68121104268337 39.0 36.0 40.0 30.0 41.0 27 36.49744626921015 38.0 35.0 40.0 30.0 41.0 28 36.3816482817185 38.0 35.0 40.0 30.0 41.0 29 36.23473601258629 38.0 35.0 40.0 30.0 41.0 30 36.16652793655705 38.0 35.0 40.0 30.0 41.0 31 36.08872286391218 38.0 35.0 40.0 29.0 41.0 32 35.94608777590548 38.0 35.0 40.0 29.0 41.0 33 35.83645178551135 38.0 35.0 40.0 29.0 41.0 34 35.773080944876895 38.0 34.0 40.0 28.0 41.0 35 35.66508521342385 38.0 34.0 40.0 27.0 41.0 36 35.504401676522455 38.0 34.0 40.0 27.0 41.0 37 35.39439371675115 38.0 34.0 40.0 27.0 41.0 38 35.32618774092543 38.0 34.0 40.0 26.0 41.0 39 35.18474206817307 38.0 34.0 40.0 26.0 41.0 40 35.056770134359354 38.0 34.0 40.0 25.0 41.0 41 34.971130135843495 38.0 33.0 40.0 25.0 41.0 42 34.79601936761006 38.0 33.0 40.0 24.0 41.0 43 33.48949629885803 37.0 31.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 7.0 10 8.0 11 14.0 12 19.0 13 15.0 14 26.0 15 34.0 16 71.0 17 188.0 18 381.0 19 839.0 20 1690.0 21 3243.0 22 6014.0 23 10231.0 24 16154.0 25 24776.0 26 36033.0 27 50944.0 28 69041.0 29 91071.0 30 117225.0 31 146999.0 32 184799.0 33 230925.0 34 294494.0 35 385373.0 36 524303.0 37 734854.0 38 954409.0 39 401119.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.21336714194272 19.35799578979203 13.482419779809998 24.94621728845525 2 18.771758983445498 21.842046494305297 35.26108679931085 24.125107722938353 3 20.5705599539262 23.21560292525679 30.202396612231723 26.01144050858528 4 15.575995980677193 16.369546209027654 33.60439959965454 34.45005821064061 5 15.507202647936586 35.77456322184286 33.468679781737514 15.249554348483036 6 34.64444371326248 34.34507137074916 15.082191464352896 15.928293451635463 7 28.376829714799364 30.5685787619487 21.662409087440572 19.392182435811364 8 26.13406905795838 34.934481817954826 19.78060340713682 19.15084571694997 9 26.25975457021785 15.105223696176159 20.100721093207266 38.53430064039872 10 17.54351329977208 26.987568428714077 32.73937244518994 22.729545826323903 11 34.83572558180888 22.295947143944915 21.43470035579781 21.433626918448397 12 21.219172804511423 25.671277546794286 30.277397213123287 22.832152435571007 13 30.777292319625772 20.11959958920019 24.676947862914584 24.42616022825945 14 21.843633314734863 21.435073725310648 26.51324913384107 30.208043826113418 15 24.921761585364287 27.856305942712517 23.308501927170074 23.91343054475312 16 23.576347881443045 26.48940015620847 25.666587092289245 24.267664870059242 17 23.409008332907458 26.720469213466785 26.26143473302563 23.609087720600126 18 23.474978058707222 25.51180209362287 27.178313578585765 23.83490626908414 19 24.520879406547827 25.457453493910226 27.623673400619186 22.397993698922757 20 23.95503790984013 25.478735556142055 27.412766297054187 23.153460236963628 21 23.520249112138966 25.892755674691543 27.683389187078895 22.903606026090596 22 23.89959253718352 25.688452544384884 27.00184981258017 23.41010510585142 23 23.384669307789256 25.809960985219465 27.174369863106403 23.630999843884872 24 23.36819437803523 25.86265275771889 27.21579054343699 23.553362320808887 25 23.698556390114202 25.55443622487019 27.09316199406389 23.653845390951716 26 23.313635757971614 25.96131565148663 27.38065651895002 23.344392071591738 27 23.666213256064513 26.144756760263405 27.10667330330976 23.082356680362327 28 23.397620562765866 26.21021310298301 27.057598547965966 23.334567786285156 29 23.296927472272063 26.39722455772631 27.319820623951795 22.98602734604983 30 23.40875164136738 26.269112143633382 27.17406650037722 23.148069714622014 31 23.36968785608659 25.712698227124875 27.420140344932758 23.497473571855778 32 22.879757048457996 26.25191381044823 27.247293596082795 23.62103554501098 33 23.084946931357646 25.73115668241586 27.31347334223353 23.870423043992965 34 23.284862969888447 25.752858785349638 27.568251363557128 23.394026881204788 35 23.158314040630536 25.743501211934106 27.50601533288576 23.592169414549602 36 22.9594947750437 25.45836358209777 27.802097356567185 23.78004428629134 37 22.729475819540244 25.07530979751938 28.15859523454489 24.03661914839548 38 22.615598118124314 24.95184116674239 28.524240665587165 23.908320049546134 39 22.266917664321674 24.894178912603298 29.066443205013233 23.7724602180618 40 22.457686149787914 24.810217443403598 29.070130228952518 23.661966177855966 41 21.984113593940585 24.85184814408516 29.195862412401098 23.968175849573157 42 21.57751419445878 25.246546390345227 28.999400041864053 24.17653937333194 43 21.52372564901539 24.918377924154182 28.92491282405265 24.632983602777774 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4596.0 1 3765.0 2 2934.0 3 4953.0 4 6972.0 5 6972.0 6 8587.5 7 10203.0 8 9957.5 9 9712.0 10 13665.5 11 17619.0 12 17619.0 13 28109.0 14 38599.0 15 48478.0 16 58357.0 17 52051.5 18 45746.0 19 45746.0 20 50201.0 21 54656.0 22 45333.5 23 36011.0 24 41246.5 25 46482.0 26 46482.0 27 53751.0 28 61020.0 29 68977.5 30 76935.0 31 87618.5 32 98302.0 33 98302.0 34 111709.5 35 125117.0 36 142009.0 37 158901.0 38 177708.5 39 196516.0 40 196516.0 41 216703.0 42 236890.0 43 258590.0 44 280290.0 45 300790.5 46 321291.0 47 321291.0 48 340028.5 49 358766.0 50 365016.5 51 371267.0 52 365352.0 53 359437.0 54 359437.0 55 338725.5 56 318014.0 57 295729.5 58 273445.0 59 248780.0 60 224115.0 61 224115.0 62 195961.5 63 167808.0 64 142199.0 65 116590.0 66 96780.5 67 76971.0 68 76971.0 69 63044.0 70 49117.0 71 40635.0 72 32153.0 73 26323.5 74 20494.0 75 20494.0 76 16511.5 77 12529.0 78 10169.5 79 7810.0 80 6110.0 81 4410.0 82 4410.0 83 3510.0 84 2610.0 85 2063.0 86 1516.0 87 1120.0 88 724.0 89 724.0 90 495.0 91 266.0 92 165.5 93 65.0 94 47.0 95 29.0 96 29.0 97 20.5 98 12.0 99 7.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4285299.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.50461167855904 #Duplication Level Percentage of deduplicated Percentage of total 1 83.59672516287236 50.579873935788164 2 8.62720011250834 10.43970785361076 3 2.839090845775626 5.153342674314181 4 1.3519093610053514 3.271870036489507 5 0.825464254306377 2.4972197080669325 6 0.5240592381933875 1.902480042207143 7 0.38869084187273195 1.646231191536529 8 0.2703142275879552 1.3084205897119088 9 0.21380240037282994 1.1642428089451695 >10 1.2672210768767378 13.833887863455043 >50 0.0687656615440319 2.8125553859660313 >100 0.02532794100787542 2.65706658288405 >500 8.496021131049154E-4 0.33315011335691064 >1k 4.248009064550485E-4 0.6403639590483665 >5k 0.0 0.0 >10k+ 1.5447305689274236E-4 1.7595872546192781 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 23952 0.5589341607201738 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 22876 0.5338250609817425 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16142 0.3766831672655747 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12336 0.28786789439896726 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4585 0.10699370102296246 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.3335594552445467E-5 2 0.0 0.0 0.0 0.0 2.3335594552445467E-5 3 0.0 0.0 0.0 0.0 2.3335594552445467E-5 4 0.0 0.0 0.0 2.3335594552445467E-5 2.3335594552445467E-5 5 0.0 2.3335594552445467E-5 0.0 2.3335594552445467E-5 2.3335594552445467E-5 6 2.3335594552445467E-5 2.3335594552445467E-5 0.0 2.3335594552445467E-5 7.000678365733639E-5 7 7.000678365733639E-5 2.3335594552445467E-5 0.0 2.3335594552445467E-5 7.000678365733639E-5 8 9.334237820978187E-5 2.3335594552445467E-5 0.0 2.3335594552445467E-5 9.334237820978187E-5 9 1.4001356731467278E-4 2.3335594552445467E-5 0.0 2.3335594552445467E-5 1.4001356731467278E-4 10 1.6334916186711826E-4 2.3335594552445467E-5 0.0 7.000678365733639E-5 1.4001356731467278E-4 11 1.6334916186711826E-4 2.3335594552445467E-5 0.0 1.1667797276222733E-4 1.4001356731467278E-4 12 1.6334916186711826E-4 2.3335594552445467E-5 0.0 1.1667797276222733E-4 1.4001356731467278E-4 13 1.6334916186711826E-4 2.3335594552445467E-5 0.0 1.1667797276222733E-4 1.4001356731467278E-4 14 1.8668475641956373E-4 2.3335594552445467E-5 0.0 1.6334916186711826E-4 1.8668475641956373E-4 15 2.1002035097200918E-4 2.3335594552445467E-5 0.0 2.3335594552445466E-4 2.3335594552445466E-4 16 2.3335594552445466E-4 2.3335594552445467E-5 0.0 2.566915400769001E-4 2.566915400769001E-4 17 2.3335594552445466E-4 2.3335594552445467E-5 0.0 3.967051073915729E-4 2.566915400769001E-4 18 2.3335594552445466E-4 2.3335594552445467E-5 0.0 5.833898638111367E-4 2.8002713462934556E-4 19 2.3335594552445466E-4 2.3335594552445467E-5 0.0 7.467390256782549E-4 2.8002713462934556E-4 20 2.3335594552445466E-4 2.3335594552445467E-5 0.0 0.0011201085385173822 2.8002713462934556E-4 21 2.3335594552445466E-4 2.3335594552445467E-5 0.0 0.0023802306443494376 3.0336272918179107E-4 22 2.3335594552445466E-4 2.3335594552445467E-5 0.0 0.003943715479363284 3.0336272918179107E-4 23 2.3335594552445466E-4 2.3335594552445467E-5 0.0 0.00473712569414643 3.5003391828668197E-4 24 2.3335594552445466E-4 4.6671189104890934E-5 0.0 0.007397383473125212 3.5003391828668197E-4 25 2.3335594552445466E-4 4.6671189104890934E-5 0.0 0.010150983630313777 3.5003391828668197E-4 26 2.3335594552445466E-4 4.6671189104890934E-5 0.0 0.015564841566481125 3.7336951283912747E-4 27 2.3335594552445466E-4 4.6671189104890934E-5 0.0 0.04466432797338062 3.967051073915729E-4 28 2.3335594552445466E-4 4.6671189104890934E-5 0.0 0.12052834586338083 3.967051073915729E-4 29 2.3335594552445466E-4 4.6671189104890934E-5 0.0 0.24280686131819507 3.967051073915729E-4 30 2.3335594552445466E-4 4.6671189104890934E-5 0.0 0.3890510323783708 3.967051073915729E-4 31 2.3335594552445466E-4 4.6671189104890934E-5 0.0 0.744965520492269 4.2004070194401837E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 3655 0.0 14.830369 37 GGTATCA 12925 0.0 14.19884 1 ATACCCG 310 0.0 13.129032 5 CGAACCG 130 7.006496E-5 12.807693 18 TATACAC 1720 0.0 12.69186 37 TCTTATA 5580 0.0 12.664875 37 CGCGAAC 120 5.1265035E-4 12.333334 12 ATACCGT 195 1.4703437E-7 12.333334 6 CTCTTAT 8290 0.0 12.006032 37 ACCGACC 330 0.0 11.772727 8 TCGTTAC 490 0.0 11.7040825 23 TCTATAC 510 0.0 11.245098 3 GGGTAAG 1390 0.0 11.179856 1 TAAGGCG 285 1.4224497E-9 11.035088 5 GTATCAA 16835 0.0 10.912087 2 TCTCTTA 11810 0.0 10.730313 37 ACCCGTT 400 0.0 10.637499 7 GTCATAC 405 0.0 10.506173 1 TACCCGT 370 9.094947E-12 10.500001 6 CGACCGA 325 1.1350494E-9 10.246154 18 >>END_MODULE