##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727107.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2594861 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.39894391260264 31.0 30.0 31.0 27.0 34.0 2 30.799021219248353 31.0 31.0 33.0 27.0 34.0 3 31.109112588304345 31.0 31.0 34.0 28.0 34.0 4 35.03853886585833 35.0 35.0 37.0 32.0 37.0 5 34.75393364037611 35.0 35.0 37.0 32.0 37.0 6 34.62693146183938 35.0 35.0 37.0 31.0 37.0 7 34.4848857029336 35.0 35.0 37.0 30.0 37.0 8 34.48980812459704 35.0 35.0 37.0 30.0 37.0 9 35.79552623435321 37.0 35.0 39.0 30.0 39.0 10 35.62384960119251 37.0 35.0 39.0 30.0 39.0 11 35.624485473403006 37.0 35.0 39.0 30.0 39.0 12 35.43257615725852 37.0 34.0 39.0 30.0 39.0 13 35.566707812094755 37.0 35.0 39.0 30.0 39.0 14 36.23926869300514 38.0 34.0 40.0 30.0 41.0 15 36.26360410056647 38.0 34.0 40.0 30.0 41.0 16 36.12516277365146 38.0 34.0 40.0 29.0 41.0 17 36.127935947243415 38.0 34.0 40.0 29.0 41.0 18 36.01670031651021 38.0 34.0 40.0 29.0 41.0 19 35.971465138209716 38.0 34.0 40.0 27.0 41.0 20 36.42800674101618 38.0 35.0 40.0 30.0 41.0 21 36.515093872080236 38.0 35.0 40.0 30.0 41.0 22 36.47891736782818 38.0 35.0 40.0 30.0 41.0 23 36.389620869865475 38.0 35.0 40.0 30.0 41.0 24 36.22869201857055 38.0 35.0 40.0 29.0 41.0 25 35.89963200340981 38.0 34.0 40.0 27.0 41.0 26 35.66337349091146 38.0 34.0 40.0 27.0 41.0 27 35.47759436825325 38.0 34.0 40.0 27.0 41.0 28 35.20728008166911 38.0 34.0 40.0 26.0 41.0 29 35.016158090934354 38.0 33.0 40.0 25.0 41.0 30 34.66576437042293 38.0 33.0 40.0 25.0 41.0 31 34.493380184911636 37.0 33.0 40.0 24.0 41.0 32 34.30350103531557 37.0 33.0 40.0 24.0 41.0 33 34.19544206799517 37.0 33.0 40.0 24.0 41.0 34 34.0008605470582 37.0 32.0 40.0 23.0 41.0 35 33.550411370782484 37.0 31.0 40.0 21.0 41.0 36 33.51053023649436 37.0 31.0 40.0 21.0 41.0 37 33.37786956603841 36.0 31.0 40.0 20.0 41.0 38 33.22054745899684 36.0 31.0 40.0 19.0 41.0 39 33.066696443470384 36.0 31.0 40.0 18.0 41.0 40 32.788131618610784 36.0 30.0 39.0 16.0 41.0 41 32.510638912835795 36.0 30.0 39.0 15.0 40.0 42 32.286318226679576 36.0 30.0 39.0 15.0 40.0 43 32.08294471264549 35.0 30.0 39.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 9.0 11 10.0 12 11.0 13 33.0 14 77.0 15 149.0 16 238.0 17 475.0 18 1045.0 19 2015.0 20 3756.0 21 6706.0 22 10924.0 23 16814.0 24 24403.0 25 33353.0 26 44886.0 27 58033.0 28 73225.0 29 89567.0 30 109408.0 31 130976.0 32 155978.0 33 183803.0 34 214134.0 35 244459.0 36 285626.0 37 322526.0 38 347874.0 39 234346.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.83085953351644 24.215362595530166 16.122019638046122 23.831758232907273 2 18.608665358182964 25.980081399350485 31.89280658964006 23.51844665282649 3 19.451485069913186 26.61953761685115 31.38341514246813 22.54556217076753 4 15.105664619415066 17.796791427363548 32.4910274577328 34.606516495488584 5 12.302431613870647 42.15944514947043 31.95042046568198 13.587702770976943 6 32.254983985654725 38.979197729666446 14.525672088023212 14.24014619665562 7 27.088117629422154 34.13955506672612 20.125856452426547 18.646470851425182 8 29.208655107152175 35.56529617578745 18.506270663438233 16.71977805362214 9 28.566347099131704 14.07878880602853 18.941322868546717 38.41354122629305 10 17.418929183489983 30.852789417236608 30.665881525060495 21.062399874212915 11 35.71289560404199 24.005678916905378 19.360381924118478 20.92104355493416 12 20.849517565680785 30.229326349272657 28.201549138855608 20.719606946190954 13 30.382128368340343 20.974957810842277 25.665844914236253 22.977068906581124 14 22.34377872263678 22.84561677870221 26.379139383573918 28.43146511508709 15 25.49388965343423 29.882795263407175 22.052857551907405 22.570457531251193 16 22.929474835068238 27.527717284278424 25.40698711799977 24.135820762653566 17 22.649729600159702 29.277406381305205 25.482521029064753 22.59034298947034 18 22.81135675475488 26.061473042293983 27.8133587887752 23.31381141417594 19 23.981939687713524 26.87407918959821 27.695394859300748 21.44858626338752 20 23.462682586851475 25.985168377034455 27.913595371775212 22.63855366433886 21 24.30796871200423 26.89639252353016 27.44112305052178 21.35451571394383 22 23.814339188110655 26.934968770966922 26.49055190239477 22.760140138527653 23 22.559088906881716 26.948842346468656 27.423819618854345 23.068249127795283 24 22.421123906058938 28.00963134441498 27.111471481516737 22.457773268009344 25 22.77393663860993 27.274717219920454 26.85072533750363 23.10062080396599 26 22.92581375264417 27.60290435595587 27.2244640464364 22.246817844963566 27 23.232805148329717 27.768539432362658 26.506467976512038 22.492187442795586 28 22.366092056568736 27.864190027905156 27.63304084496241 22.136677070563703 29 22.69493433366951 27.751929679470305 27.555734199249983 21.997401787610205 30 22.43526724552876 28.51382020077376 27.420119998720548 21.63079255497693 31 22.781297341167793 27.95089987479098 26.906335252639735 22.361467531401487 32 21.568900993155317 28.751173954982562 26.896431061239888 22.783493990622233 33 21.805406917750123 27.91028112873869 27.59535096484937 22.688960988661822 34 22.053474155263036 28.077110874147017 27.756978119444547 22.112436851145397 35 22.38767317401587 28.29700704584947 27.54856618524075 21.76675359489391 36 21.897974496514458 28.39127028384179 27.296336875077316 22.414418344566435 37 21.820205398285303 28.297585111495376 27.508641117963545 22.37356837225578 38 21.943949984218808 27.49307188323382 27.994177722814438 22.56880040973293 39 21.992815800152687 27.259841663965815 27.941535211327313 22.805807324554188 40 21.854581035361818 27.555811274669434 28.44614798249309 22.14345970747566 41 20.95854074649856 27.985545275835584 28.69741384991335 22.358500127752507 42 21.54466077373701 27.962923640225817 28.5421068797134 21.950308706323767 43 20.9995063319384 27.198258403822017 28.64920317504483 23.15303208919476 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1337.0 1 1402.0 2 1467.0 3 1484.0 4 1501.0 5 1501.0 6 2018.0 7 2535.0 8 3725.0 9 4915.0 10 8775.0 11 12635.0 12 12635.0 13 26282.5 14 39930.0 15 54102.0 16 68274.0 17 51481.5 18 34689.0 19 34689.0 20 38538.0 21 42387.0 22 37061.5 23 31736.0 24 36007.5 25 40279.0 26 40279.0 27 44908.0 28 49537.0 29 53673.5 30 57810.0 31 62977.5 32 68145.0 33 68145.0 34 77410.0 35 86675.0 36 97184.0 37 107693.0 38 119004.5 39 130316.0 40 130316.0 41 140144.5 42 149973.0 43 157948.5 44 165924.0 45 179660.5 46 193397.0 47 193397.0 48 210764.5 49 228132.0 50 222068.0 51 216004.0 52 198656.5 53 181309.0 54 181309.0 55 169509.0 56 157709.0 57 149167.0 58 140625.0 59 129418.5 60 118212.0 61 118212.0 62 100460.0 63 82708.0 64 71871.5 65 61035.0 66 51402.5 67 41770.0 68 41770.0 69 33912.0 70 26054.0 71 22632.0 72 19210.0 73 15526.0 74 11842.0 75 11842.0 76 9151.0 77 6460.0 78 5561.0 79 4662.0 80 3690.5 81 2719.0 82 2719.0 83 2290.0 84 1861.0 85 1512.5 86 1164.0 87 1118.0 88 1072.0 89 1072.0 90 808.0 91 544.0 92 427.5 93 311.0 94 263.0 95 215.0 96 215.0 97 128.5 98 42.0 99 44.0 100 46.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2594861.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.034868856810085 #Duplication Level Percentage of deduplicated Percentage of total 1 85.92420203825016 48.14751392839402 2 7.402839709726082 8.296343046049742 3 2.354455023180466 3.957947353595255 4 1.170957992041471 2.6245791008350996 5 0.6899721768709105 1.9331250222904626 6 0.46698392399164135 1.5700429763466115 7 0.34004947251686074 1.3338239318116814 8 0.24993717238752156 1.1204157341741365 9 0.18687003350541673 0.9424114038669362 >10 1.0596552091326799 10.780554492617354 >50 0.08066165591556072 3.13143420324608 >100 0.06208826081911896 7.165038651186968 >500 0.00759760050516494 2.768603158764399 >1k 0.003453454775072775 3.241705905847899 >5k 6.90690955014555E-5 0.367289354534994 >10k+ 2.0720728650436648E-4 2.619171736438481 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 35213 1.3570283726180323 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17245 0.6645828042426936 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 15216 0.5863897912065424 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9490 0.3657228653095484 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4923 0.18972114498618614 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4231 0.16305304985507896 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 3073 0.1184263819911741 No Hit GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAA 2828 0.10898464310805088 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2677 0.10316544893926882 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.8537709727033546E-5 2 0.0 0.0 0.0 0.0 3.8537709727033546E-5 3 0.0 0.0 0.0 0.0 3.8537709727033546E-5 4 0.0 0.0 0.0 0.0 3.8537709727033546E-5 5 0.0 0.0 0.0 0.0 3.8537709727033546E-5 6 3.8537709727033546E-5 0.0 0.0 0.0 3.8537709727033546E-5 7 3.8537709727033546E-5 0.0 0.0 0.0 3.8537709727033546E-5 8 3.8537709727033546E-5 0.0 0.0 0.0 3.8537709727033546E-5 9 3.8537709727033546E-5 0.0 0.0 0.0 7.707541945406709E-5 10 3.8537709727033546E-5 0.0 0.0 3.8537709727033546E-5 7.707541945406709E-5 11 3.8537709727033546E-5 0.0 0.0 1.1561312918110065E-4 7.707541945406709E-5 12 3.8537709727033546E-5 0.0 0.0 1.5415083890813418E-4 7.707541945406709E-5 13 3.8537709727033546E-5 0.0 0.0 1.9268854863516773E-4 7.707541945406709E-5 14 3.8537709727033546E-5 0.0 0.0 4.2391480699736906E-4 7.707541945406709E-5 15 3.8537709727033546E-5 0.0 0.0 6.166033556325367E-4 7.707541945406709E-5 16 3.8537709727033546E-5 0.0 0.0 0.002312262583622013 7.707541945406709E-5 17 3.8537709727033546E-5 0.0 0.0 0.003969384101884455 7.707541945406709E-5 18 3.8537709727033546E-5 0.0 0.0 0.004431836618608858 1.1561312918110065E-4 19 3.8537709727033546E-5 0.0 0.0 0.006011882717417234 1.1561312918110065E-4 20 3.8537709727033546E-5 0.0 0.0 0.007399240267590442 1.1561312918110065E-4 21 3.8537709727033546E-5 0.0 0.0 0.01152277520838303 1.1561312918110065E-4 22 3.8537709727033546E-5 0.0 0.0 0.018074185861978734 1.1561312918110065E-4 23 3.8537709727033546E-5 0.0 0.0 0.029905262748178032 1.1561312918110065E-4 24 3.8537709727033546E-5 0.0 0.0 0.04851897654633524 1.1561312918110065E-4 25 3.8537709727033546E-5 0.0 0.0 0.05599529223337975 1.1561312918110065E-4 26 3.8537709727033546E-5 0.0 0.0 0.06528288027759484 1.1561312918110065E-4 27 3.8537709727033546E-5 0.0 0.0 0.07965744600577834 1.1561312918110065E-4 28 3.8537709727033546E-5 0.0 0.0 0.11148959424030805 1.1561312918110065E-4 29 3.8537709727033546E-5 0.0 0.0 0.15765777049329424 1.1561312918110065E-4 30 3.8537709727033546E-5 0.0 0.0 0.23681422627262116 1.1561312918110065E-4 31 3.8537709727033546E-5 0.0 0.0 0.4530493155510064 1.1561312918110065E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGACGG 685 0.0 18.90511 5 CAAGACG 705 0.0 17.843971 4 TAGAGTG 445 0.0 17.044945 5 CGCAAGA 775 0.0 16.470968 2 TTAGAGT 395 0.0 16.392405 4 CGAACGT 255 0.0 15.960784 4 CGAACGA 325 0.0 15.93846 16 TATACAG 475 0.0 15.578947 5 AGGTTAT 405 0.0 15.530864 1 TACGACG 645 0.0 15.488371 5 CGTCGTA 550 0.0 15.472728 10 ACGAACG 365 0.0 15.205481 15 TCGAACG 280 0.0 15.196429 3 AACGAAC 355 0.0 15.112677 14 GCGCAAG 785 0.0 15.082803 1 CGCGCTA 530 0.0 15.009434 24 ATACCGT 620 0.0 14.919355 6 CGCGCGC 535 0.0 14.869159 22 TACCGTC 585 0.0 14.863247 7 CTACGTA 75 0.0041062557 14.8 33 >>END_MODULE