##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727086.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2496450 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.634734523022694 31.0 31.0 34.0 30.0 34.0 2 31.889154599531334 31.0 31.0 34.0 30.0 34.0 3 32.00089006389072 33.0 31.0 34.0 30.0 34.0 4 35.72586152336318 37.0 35.0 37.0 35.0 37.0 5 35.34004486370646 37.0 35.0 37.0 33.0 37.0 6 35.356672875483184 37.0 35.0 37.0 33.0 37.0 7 35.30974143283463 37.0 35.0 37.0 32.0 37.0 8 35.26144965851509 37.0 35.0 37.0 32.0 37.0 9 37.09306415109455 39.0 37.0 39.0 33.0 39.0 10 36.87036271505538 39.0 37.0 39.0 33.0 39.0 11 36.97726251276813 39.0 37.0 39.0 33.0 39.0 12 36.86416110877446 39.0 37.0 39.0 33.0 39.0 13 36.99200705001102 39.0 37.0 39.0 33.0 39.0 14 38.043831841214526 40.0 37.0 41.0 33.0 41.0 15 38.045737347032784 40.0 37.0 41.0 33.0 41.0 16 37.98842235975085 40.0 37.0 41.0 33.0 41.0 17 37.90361313064552 40.0 37.0 41.0 33.0 41.0 18 37.92198882413027 40.0 37.0 41.0 33.0 41.0 19 37.96822367762223 40.0 37.0 41.0 33.0 41.0 20 37.856841915520036 39.0 37.0 41.0 33.0 41.0 21 37.846883774960446 39.0 37.0 41.0 33.0 41.0 22 37.75565943639969 39.0 37.0 41.0 32.0 41.0 23 37.69223537423141 39.0 37.0 41.0 32.0 41.0 24 37.60354503394821 39.0 37.0 41.0 32.0 41.0 25 37.573127841534976 39.0 37.0 41.0 32.0 41.0 26 37.44078431372549 39.0 36.0 40.0 32.0 41.0 27 37.25408680326063 39.0 36.0 40.0 31.0 41.0 28 37.14537643453704 39.0 36.0 40.0 31.0 41.0 29 37.06588395521641 39.0 36.0 40.0 31.0 41.0 30 37.01246129503895 39.0 36.0 40.0 31.0 41.0 31 36.96119810130385 39.0 36.0 40.0 31.0 41.0 32 36.847231468685536 39.0 36.0 40.0 31.0 41.0 33 36.811052093973444 39.0 35.0 40.0 30.0 41.0 34 36.79370105549881 39.0 35.0 40.0 30.0 41.0 35 36.692931562819204 39.0 35.0 40.0 30.0 41.0 36 36.60984037333013 39.0 35.0 40.0 30.0 41.0 37 36.471565222616114 38.0 35.0 40.0 30.0 41.0 38 36.420700194275874 38.0 35.0 40.0 30.0 41.0 39 36.32297262112199 38.0 35.0 40.0 30.0 41.0 40 36.25536541889483 38.0 35.0 40.0 30.0 41.0 41 36.197572553025296 38.0 35.0 40.0 30.0 41.0 42 36.12567165374832 38.0 35.0 40.0 29.0 41.0 43 34.78989845580725 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 6.0 11 4.0 12 8.0 13 2.0 14 5.0 15 3.0 16 11.0 17 17.0 18 49.0 19 132.0 20 277.0 21 657.0 22 1211.0 23 2358.0 24 4137.0 25 6839.0 26 11070.0 27 16725.0 28 25041.0 29 35848.0 30 49794.0 31 65963.0 32 87084.0 33 115118.0 34 152893.0 35 205805.0 36 286068.0 37 408828.0 38 611635.0 39 408860.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.49554367201426 18.574415670251756 12.859700775100643 26.070339882633338 2 18.446153538023992 20.790682769532737 35.696208616235054 25.066955076208213 3 20.152015862524784 22.39956738568768 30.007170181657955 27.441246570129586 4 15.168379098319615 15.60435818862785 33.75749564381422 35.469767069238316 5 15.632077550121174 35.38656892787759 33.734583108013375 15.246770413987862 6 35.43259428388311 33.782851649342064 15.095956257886197 15.688597808888622 7 29.034709287187805 30.239740431412603 21.30725630395161 19.418293977447977 8 26.289491077329807 34.86627010354704 19.685913997876987 19.15832482124617 9 26.586673075767592 14.847563540227124 19.735464359390335 38.83029902461496 10 17.40591640128983 26.49998998577981 32.92146848524906 23.172625127681307 11 35.43836247471409 21.846221634721307 21.36297542510365 21.352440465460955 12 21.35167938472631 24.704480362114204 30.33667808287769 23.6071621702818 13 30.84167517875383 19.762542810791324 24.38650884255643 25.009273167898417 14 22.142121812974423 20.79849386128302 25.84453924572894 31.21484508001362 15 25.293837248893432 27.363976847122917 22.815558092491337 24.526627811492318 16 24.203248613030503 26.152977227663282 25.10653127440966 24.537242884896553 17 23.91808367882393 26.231168258927678 25.673816819884237 24.17693124236416 18 23.88119129163412 25.423461315067396 26.488373490356302 24.206973902942178 19 24.91602074946424 25.218450199282984 26.826533677822507 23.03899537343027 20 24.310801337899818 24.948186424723108 26.7919645897174 23.949047647659675 21 23.893689038434577 25.411043682028478 27.13060545975285 23.564661819784092 22 24.54573494361994 24.989204670632297 26.290692783752927 24.174367601994835 23 23.895771996234654 25.28486450760079 26.551142622523983 24.26822087364057 24 23.870375933826033 25.203669210278594 26.550461655550883 24.37549320034449 25 24.24983476536682 25.054657613811614 26.32009453423862 24.37541308658295 26 23.86368643473733 25.327685313144666 26.719301407999357 24.08932684411865 27 24.314166115884557 25.653788379498888 26.291654148891425 23.74039135572513 28 23.897774840273186 25.73522401810571 26.168198842356144 24.19880229926496 29 23.786897394299906 25.91067315588135 26.64936209417373 23.653067355645017 30 24.342886899397143 25.473332131626908 26.300466662660977 23.88331430631497 31 24.066173967033187 25.143343547837933 26.669470648320615 24.121011836808268 32 23.60423801798554 25.649261951971802 26.503875503214562 24.242624526828095 33 23.667968515291715 25.060666145927218 26.593322517975526 24.678042820805544 34 24.019427587173787 25.080454245027937 26.963568266939053 23.93654990085922 35 23.782290853011276 25.1261591459873 26.82965811452262 24.2618918864788 36 23.545194175729538 24.81207314386429 27.209076889182636 24.433655791223536 37 23.329207474613952 24.46790442428248 27.677502052915138 24.525386048188427 38 23.40419395541669 24.308197640649723 27.84946624206373 24.438142161869855 39 22.868072663181717 24.398285565503013 28.402852049910877 24.330789721404393 40 23.294678443389614 24.145726932243786 28.408700354503395 24.150894269863205 41 22.603617136333593 24.397244086602974 28.508922670191673 24.490216106871756 42 22.327505057181195 24.653327725370026 28.461455266478396 24.55771195097038 43 22.094494181738067 24.402932163672414 28.310440825972883 25.192132828616636 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1925.0 1 1651.5 2 1378.0 3 2374.5 4 3371.0 5 3371.0 6 4009.5 7 4648.0 8 4251.5 9 3855.0 10 5444.5 11 7034.0 12 7034.0 13 11072.5 14 15111.0 15 18442.5 16 21774.0 17 19906.5 18 18039.0 19 18039.0 20 20735.5 21 23432.0 22 20108.0 23 16784.0 24 19512.5 25 22241.0 26 22241.0 27 26669.0 28 31097.0 29 35709.5 30 40322.0 31 46838.0 32 53354.0 33 53354.0 34 61223.0 35 69092.0 36 79226.0 37 89360.0 38 100992.5 39 112625.0 40 112625.0 41 125145.5 42 137666.0 43 150987.5 44 164309.0 45 177523.5 46 190738.0 47 190738.0 48 203268.5 49 215799.0 50 220693.0 51 225587.0 52 223378.5 53 221170.0 54 221170.0 55 208802.5 56 196435.0 57 183069.5 58 169704.0 59 154424.0 60 139144.0 61 139144.0 62 121564.5 63 103985.0 64 87975.5 65 71966.0 66 59533.5 67 47101.0 68 47101.0 69 38406.0 70 29711.0 71 24225.5 72 18740.0 73 15372.0 74 12004.0 75 12004.0 76 9686.5 77 7369.0 78 5985.5 79 4602.0 80 3554.0 81 2506.0 82 2506.0 83 1934.0 84 1362.0 85 1046.5 86 731.0 87 500.5 88 270.0 89 270.0 90 177.5 91 85.0 92 50.5 93 16.0 94 10.0 95 4.0 96 4.0 97 3.5 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2496450.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.87306403997243 #Duplication Level Percentage of deduplicated Percentage of total 1 83.40420413571977 53.2728207196376 2 8.887654766313277 11.353634841077882 3 2.871113789286367 5.501605047874081 4 1.4089332062341158 3.5997152363934144 5 0.8223818009199468 2.626402271773381 6 0.5286759162933145 2.0260890394676387 7 0.3824304394140265 1.7098902763268833 8 0.2821604008865358 1.4417959484295997 9 0.2145037952572665 1.2330913186156063 >10 1.1431990396986673 12.629911066308214 >50 0.042637907384991354 1.8123706729157256 >100 0.01122473836461514 1.1273812487388113 >500 2.514469220103398E-4 0.09114438937381646 >1k 4.400321135132654E-4 0.5442564748673953 >5k 1.8858519150568518E-4 1.0298914481998294 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 9915 0.3971639728414349 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 8920 0.35730737647459393 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6815 0.27298764245228224 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4922 0.19715996715335776 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.0056880770694385E-5 2 0.0 0.0 0.0 0.0 4.0056880770694385E-5 3 0.0 0.0 0.0 0.0 4.0056880770694385E-5 4 0.0 0.0 0.0 0.0 4.0056880770694385E-5 5 0.0 0.0 0.0 0.0 8.011376154138877E-5 6 0.0 0.0 0.0 0.0 1.2017064231208316E-4 7 0.0 0.0 0.0 0.0 1.2017064231208316E-4 8 0.0 0.0 0.0 0.0 1.6022752308277754E-4 9 0.0 0.0 0.0 4.0056880770694385E-5 2.0028440385347194E-4 10 0.0 0.0 0.0 4.0056880770694385E-5 2.0028440385347194E-4 11 0.0 0.0 0.0 4.0056880770694385E-5 2.0028440385347194E-4 12 0.0 0.0 0.0 8.011376154138877E-5 2.0028440385347194E-4 13 0.0 0.0 0.0 8.011376154138877E-5 2.0028440385347194E-4 14 0.0 0.0 0.0 8.011376154138877E-5 2.403412846241663E-4 15 0.0 0.0 0.0 8.011376154138877E-5 2.803981653948607E-4 16 0.0 0.0 0.0 2.0028440385347194E-4 4.005688077069439E-4 17 0.0 0.0 0.0 2.403412846241663E-4 4.005688077069439E-4 18 0.0 0.0 0.0 2.803981653948607E-4 4.406256884776382E-4 19 4.0056880770694385E-5 0.0 0.0 4.005688077069439E-4 4.806825692483326E-4 20 4.0056880770694385E-5 0.0 0.0 7.21023853872499E-4 4.806825692483326E-4 21 4.0056880770694385E-5 0.0 0.0 0.001361933946203609 4.806825692483326E-4 22 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.0022431853231588855 4.806825692483326E-4 23 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.00292415229626069 6.409100923311102E-4 24 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.004646598169400549 6.409100923311102E-4 25 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.005928418354062769 6.409100923311102E-4 26 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.009092911934947625 6.809669731018045E-4 27 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.030523343147269122 6.809669731018045E-4 28 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.09028820925714515 6.809669731018045E-4 29 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.1819383524604939 6.809669731018045E-4 30 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.29445813054537445 6.809669731018045E-4 31 4.0056880770694385E-5 4.0056880770694385E-5 0.0 0.6044583308297783 7.21023853872499E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4735 0.0 15.901796 1 ATACCGT 140 3.4782715E-8 15.857143 6 TATTCCG 105 9.351796E-6 15.857142 5 CTTATAC 1990 0.0 14.316583 37 TAGTACT 255 1.8189894E-12 13.784313 4 GTAATAC 190 7.1377144E-9 13.631579 3 TACTTAC 720 0.0 13.618055 31 TACGGAT 680 0.0 13.6029415 27 GTTACGG 545 0.0 13.238532 25 CGTTACG 310 0.0 13.129032 24 GCGCGAC 85 0.009408768 13.058824 25 CGCCGAT 85 0.009408768 13.058824 19 TCGTTAC 405 0.0 12.790123 23 CATTACG 395 0.0 12.64557 24 CTAGACA 280 5.456968E-12 12.553572 4 TCTTATA 2995 0.0 12.477464 37 CTCTTAT 4565 0.0 12.400877 37 GTACTAA 105 0.0026450655 12.333333 1 GGACCGT 150 1.9455794E-5 12.333333 6 GTATCAA 6255 0.0 12.067146 2 >>END_MODULE