##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727084.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3402692 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.08433616677619 33.0 31.0 34.0 30.0 34.0 2 32.308251819441786 34.0 31.0 34.0 30.0 34.0 3 32.41227739683756 34.0 31.0 34.0 30.0 34.0 4 36.01108710397532 37.0 35.0 37.0 35.0 37.0 5 35.7352701919539 37.0 35.0 37.0 35.0 37.0 6 35.75337350544804 37.0 35.0 37.0 33.0 37.0 7 35.72324559495834 37.0 35.0 37.0 33.0 37.0 8 35.69603654988462 37.0 35.0 37.0 33.0 37.0 9 37.52737097568631 39.0 37.0 39.0 35.0 39.0 10 37.360292380268326 39.0 37.0 39.0 34.0 39.0 11 37.44405400194905 39.0 37.0 39.0 35.0 39.0 12 37.360280330985 39.0 37.0 39.0 34.0 39.0 13 37.427005441573904 39.0 37.0 39.0 35.0 39.0 14 38.62960238540544 40.0 38.0 41.0 35.0 41.0 15 38.582907885873894 40.0 38.0 41.0 34.0 41.0 16 38.53399514266939 40.0 38.0 41.0 34.0 41.0 17 38.50709761565255 40.0 38.0 41.0 34.0 41.0 18 38.50890412649749 40.0 38.0 41.0 34.0 41.0 19 38.56381741280139 40.0 38.0 41.0 34.0 41.0 20 38.48851615132959 40.0 38.0 41.0 34.0 41.0 21 38.42981468790005 40.0 38.0 41.0 34.0 41.0 22 38.375877981315966 40.0 38.0 41.0 34.0 41.0 23 38.32008627286866 40.0 38.0 41.0 34.0 41.0 24 38.247345631047416 40.0 38.0 41.0 34.0 41.0 25 38.2213979402191 40.0 38.0 41.0 34.0 41.0 26 38.073820962931705 40.0 37.0 41.0 33.0 41.0 27 37.94428029336772 40.0 37.0 41.0 33.0 41.0 28 37.86770592225215 40.0 37.0 41.0 33.0 41.0 29 37.7838787642255 40.0 37.0 41.0 33.0 41.0 30 37.725867636565404 40.0 37.0 41.0 33.0 41.0 31 37.666396782312354 40.0 37.0 41.0 33.0 41.0 32 37.55165439599 39.0 37.0 41.0 33.0 41.0 33 37.46709458275977 39.0 37.0 41.0 32.0 41.0 34 37.421895076016284 39.0 36.0 41.0 32.0 41.0 35 37.338926062070854 39.0 36.0 41.0 32.0 41.0 36 37.21575534900015 39.0 36.0 41.0 31.0 41.0 37 37.13087843389881 39.0 36.0 41.0 31.0 41.0 38 37.087523349160016 39.0 36.0 41.0 31.0 41.0 39 36.97827808100175 39.0 36.0 41.0 31.0 41.0 40 36.89470395792508 39.0 36.0 41.0 31.0 41.0 41 36.830132730203026 39.0 36.0 40.0 31.0 41.0 42 36.676890238669856 39.0 35.0 40.0 30.0 41.0 43 35.42973827781063 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 1.0 13 5.0 14 4.0 15 5.0 16 16.0 17 30.0 18 86.0 19 170.0 20 352.0 21 696.0 22 1439.0 23 2562.0 24 4429.0 25 7023.0 26 11277.0 27 17027.0 28 25281.0 29 35491.0 30 48892.0 31 66260.0 32 87340.0 33 117417.0 34 159729.0 35 221319.0 36 323112.0 37 505030.0 38 891507.0 39 876187.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.796233100145415 18.588782058440785 12.918389322336548 25.69659551907725 2 18.521364848772677 21.019240060516793 35.85687449819143 24.6025205925191 3 20.067052792318552 22.63302114913721 30.401605552309757 26.898320506234473 4 15.092961690332244 15.800254621928755 34.01318720589463 35.09359648184437 5 15.456585550499428 35.53753910139384 33.822867306238706 15.183008041868026 6 34.85610804621753 34.04821829304562 15.177218508169412 15.918455152567438 7 28.657545261222584 30.61567135667877 21.440847423157898 19.285935958940744 8 26.17057318146926 34.882616469548225 19.801851005027785 19.144959343954728 9 26.542278878017754 14.990660335992798 19.99687306403283 38.47018772195662 10 17.421794273475236 26.714730572146994 32.86018834499273 23.003286809385042 11 35.07287759221228 22.17441367011766 21.41522065470516 21.3374880829649 12 21.272421952971353 25.19840173603723 30.15856269095175 23.370613620039663 13 30.75168131585227 20.08741901999946 24.45851696245208 24.702382701696187 14 21.989824527168487 21.34924348133772 26.038236784287268 30.62269520720653 15 25.300967586840066 27.570758681655583 23.028325807919142 24.09994792358521 16 23.797040696013628 26.457169793798556 25.424281715770924 24.321507794416892 17 23.625147383307098 26.526379701718522 25.841216307558838 24.00725660741554 18 23.615125906194272 25.55776426429427 26.768393965718907 24.05871586379255 19 24.75234314478066 25.411174446585232 27.18747391770986 22.649008490924246 20 24.070324319685707 25.32159831098436 26.995743370249205 23.61233399908073 21 23.66038418992962 25.824729361340964 27.440479479188827 23.074406969540586 22 24.254266915724372 25.421107758210265 26.437126839572905 23.887498486492458 23 23.63878364541957 25.567344913968114 26.80692228388582 23.986949156726496 24 23.452460581210406 25.61945071725563 26.912015545338807 24.01607315619515 25 23.898754280434435 25.355806520249264 26.658304659957473 24.087134539358836 26 23.43891248458573 25.686574041964423 26.969705162853412 23.904808310596433 27 23.933432705634246 26.042321785221816 26.634999582683356 23.38924592646058 28 23.55100020807055 26.105242555012325 26.42475428278551 23.91900295413161 29 23.492869763116968 26.239342261950245 26.969852105333068 23.29793586959972 30 23.870129885396622 25.97546295697642 26.592151155614435 23.562256002012525 31 23.707611502892416 25.427396896339722 27.021399527197875 23.843592073569987 32 23.160867924572663 26.103773130215725 26.779943644620204 23.955415300591415 33 23.30460705817629 25.47494748275777 26.863054311116024 24.357391147949915 34 23.639312638346343 25.564112179415595 27.268821274449763 23.527753907788306 35 23.41872258788042 25.610310895020767 26.994332722444465 23.97663379465435 36 23.186759189488793 25.213184149491052 27.459464447560933 24.140592213459225 37 22.9585869070724 25.028683172029677 27.782091355902917 24.23063856499501 38 22.989944432231894 24.73347573039229 28.08232423034468 24.19425560703114 39 22.463596470088977 24.771239947664967 28.685728828821418 24.079434753424643 40 22.874447643218957 24.503275641756588 28.721053800931735 23.901222914092724 41 22.302283015917983 24.685983920966105 28.844749980309707 24.1669830828062 42 21.927638469776284 25.02974115788323 28.72831275942695 24.31430761291354 43 21.723829250487555 24.728420909091977 28.601325068504586 24.946424771915883 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2583.0 1 2225.0 2 1867.0 3 3217.5 4 4568.0 5 4568.0 6 5452.5 7 6337.0 8 5937.5 9 5538.0 10 7850.0 11 10162.0 12 10162.0 13 16402.5 14 22643.0 15 28249.5 16 33856.0 17 31109.0 18 28362.0 19 28362.0 20 32897.5 21 37433.0 22 32183.5 23 26934.0 24 31429.5 25 35925.0 26 35925.0 27 42611.0 28 49297.0 29 56001.0 30 62705.0 31 71769.0 32 80833.0 33 80833.0 34 92093.5 35 103354.0 36 115908.5 37 128463.0 38 143089.0 39 157715.0 40 157715.0 41 173959.5 42 190204.0 43 207300.5 44 224397.0 45 240165.5 46 255934.0 47 255934.0 48 271481.0 49 287028.0 50 293745.0 51 300462.0 52 294957.5 53 289453.0 54 289453.0 55 273171.0 56 256889.0 57 238520.0 58 220151.0 59 200171.0 60 180191.0 61 180191.0 62 157672.5 63 135154.0 64 114015.5 65 92877.0 66 77497.0 67 62117.0 68 62117.0 69 50944.0 70 39771.0 71 32928.0 72 26085.0 73 21346.5 74 16608.0 75 16608.0 76 13705.5 77 10803.0 78 8769.0 79 6735.0 80 5472.5 81 4210.0 82 4210.0 83 3393.0 84 2576.0 85 1997.0 86 1418.0 87 1087.0 88 756.0 89 756.0 90 482.0 91 208.0 92 137.0 93 66.0 94 41.0 95 16.0 96 16.0 97 10.5 98 5.0 99 4.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3402692.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.799620821632374 #Duplication Level Percentage of deduplicated Percentage of total 1 82.756192118797 49.487889093462215 2 9.087472125621927 10.868547746786895 3 2.983066283793717 5.351586979699807 4 1.4095867005206584 3.3717100082540497 5 0.8585012871296451 2.566902572261806 6 0.5531922466567063 1.984841195492278 7 0.3850779387451024 1.6119260306613026 8 0.3043595009927162 1.4560466202260538 9 0.23113716465262465 1.2439723323612746 >10 1.3310460265175195 14.317349484256086 >50 0.07252281764247177 2.9358872506101914 >100 0.026419000034751085 2.6932239247169614 >500 9.347927270826529E-4 0.3522598420123685 >1k 2.951977008192326E-4 0.3569966502235534 >5k 4.9199616803205436E-5 0.21147947270536527 >10k+ 1.475988504096163E-4 1.1893807962697684 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 15931 0.4681881286933992 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 14040 0.41261448288590324 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 10455 0.30725672496952416 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7188 0.21124450875953507 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.9388495932044394E-5 0.0 0.0 2.9388495932044394E-5 2.9388495932044394E-5 2 2.9388495932044394E-5 0.0 0.0 2.9388495932044394E-5 2.9388495932044394E-5 3 2.9388495932044394E-5 2.9388495932044394E-5 0.0 2.9388495932044394E-5 2.9388495932044394E-5 4 2.9388495932044394E-5 2.9388495932044394E-5 0.0 2.9388495932044394E-5 5.877699186408879E-5 5 2.9388495932044394E-5 5.877699186408879E-5 0.0 2.9388495932044394E-5 5.877699186408879E-5 6 2.9388495932044394E-5 5.877699186408879E-5 0.0 2.9388495932044394E-5 5.877699186408879E-5 7 2.9388495932044394E-5 5.877699186408879E-5 0.0 2.9388495932044394E-5 5.877699186408879E-5 8 2.9388495932044394E-5 5.877699186408879E-5 0.0 2.9388495932044394E-5 5.877699186408879E-5 9 2.9388495932044394E-5 5.877699186408879E-5 0.0 2.9388495932044394E-5 5.877699186408879E-5 10 8.816548779613318E-5 5.877699186408879E-5 0.0 2.9388495932044394E-5 8.816548779613318E-5 11 8.816548779613318E-5 5.877699186408879E-5 0.0 2.9388495932044394E-5 8.816548779613318E-5 12 8.816548779613318E-5 5.877699186408879E-5 0.0 5.877699186408879E-5 8.816548779613318E-5 13 8.816548779613318E-5 5.877699186408879E-5 0.0 1.1755398372817758E-4 1.4694247966022197E-4 14 8.816548779613318E-5 5.877699186408879E-5 0.0 1.7633097559226636E-4 2.3510796745635515E-4 15 8.816548779613318E-5 5.877699186408879E-5 0.0 2.3510796745635515E-4 2.6449646338839956E-4 16 1.4694247966022197E-4 5.877699186408879E-5 0.0 3.820504471165771E-4 2.6449646338839956E-4 17 1.4694247966022197E-4 5.877699186408879E-5 0.0 4.408274389806659E-4 2.6449646338839956E-4 18 1.7633097559226636E-4 8.816548779613318E-5 0.0 4.996044308447547E-4 2.6449646338839956E-4 19 1.7633097559226636E-4 8.816548779613318E-5 0.0 6.171584145729322E-4 2.6449646338839956E-4 20 1.7633097559226636E-4 8.816548779613318E-5 0.0 7.641008942331542E-4 2.6449646338839956E-4 21 1.7633097559226636E-4 8.816548779613318E-5 0.0 0.0013224823169419976 2.6449646338839956E-4 22 1.7633097559226636E-4 8.816548779613318E-5 0.0 0.0022041371949033297 2.6449646338839956E-4 23 1.7633097559226636E-4 8.816548779613318E-5 0.0 0.002791907113544217 3.820504471165771E-4 24 1.7633097559226636E-4 8.816548779613318E-5 0.0 0.003967446950825993 3.820504471165771E-4 25 1.7633097559226636E-4 8.816548779613318E-5 0.0 0.0054956487392923015 3.820504471165771E-4 26 1.7633097559226636E-4 8.816548779613318E-5 0.0 0.008934102763341495 4.114389430486215E-4 27 1.7633097559226636E-4 8.816548779613318E-5 0.0 0.030946086216442747 4.114389430486215E-4 28 1.7633097559226636E-4 8.816548779613318E-5 0.0 0.09142761084459011 4.408274389806659E-4 29 2.0571947152431074E-4 8.816548779613318E-5 0.0 0.18996723770473495 4.408274389806659E-4 30 2.0571947152431074E-4 8.816548779613318E-5 0.0 0.30302478155530976 4.408274389806659E-4 31 2.0571947152431074E-4 8.816548779613318E-5 0.0 0.6226834518081567 4.408274389806659E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8160 0.0 15.734069 1 CTTATAC 2655 0.0 15.329568 37 TCTTATA 4155 0.0 13.312876 37 CTCTTAT 6255 0.0 12.836131 37 ATTATAC 410 0.0 12.634146 3 AACACCG 265 3.274181E-11 12.566037 5 TTCGTTA 210 2.8965587E-8 12.333333 22 GTATCAA 10555 0.0 12.128849 2 TATACAC 1110 0.0 11.666667 37 TATACTA 460 0.0 11.663043 5 TATACCG 175 7.343884E-6 11.6285715 5 TCGTTAC 595 0.0 11.504201 23 TAAGACT 520 0.0 11.384615 4 GTATAGA 410 0.0 11.280487 1 TACGGAT 955 0.0 11.235601 27 ATACGAC 165 5.15691E-5 11.212121 3 ATACCGT 200 2.6611833E-6 11.1 6 TAGTACT 250 2.7186616E-8 11.1 4 TACACGC 355 3.6379788E-12 10.943662 5 AACGCAG 11515 0.0 10.860617 7 >>END_MODULE