##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2727050.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3566558 Sequences flagged as poor quality 0 Sequence length 43 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.1686634564754 33.0 31.0 34.0 30.0 34.0 2 32.342850726106235 34.0 31.0 34.0 30.0 34.0 3 32.45148936313387 34.0 31.0 34.0 30.0 34.0 4 36.01261804798913 37.0 35.0 37.0 35.0 37.0 5 35.799860818189416 37.0 35.0 37.0 35.0 37.0 6 35.82904918411533 37.0 35.0 37.0 35.0 37.0 7 35.79366324618862 37.0 35.0 37.0 35.0 37.0 8 35.7969507295269 37.0 35.0 37.0 35.0 37.0 9 37.57076823088255 39.0 37.0 39.0 35.0 39.0 10 37.425761756853525 39.0 37.0 39.0 35.0 39.0 11 37.4966452248919 39.0 37.0 39.0 35.0 39.0 12 37.41909089940497 39.0 37.0 39.0 35.0 39.0 13 37.45036699248968 39.0 37.0 39.0 35.0 39.0 14 38.68193058966096 40.0 38.0 41.0 35.0 41.0 15 38.5834731974077 40.0 38.0 41.0 34.0 41.0 16 38.53748207655673 40.0 38.0 41.0 34.0 41.0 17 38.565903316306645 40.0 38.0 41.0 34.0 41.0 18 38.568026652026965 40.0 38.0 41.0 34.0 41.0 19 38.624061069524174 40.0 38.0 41.0 34.0 41.0 20 38.59524421024416 40.0 38.0 41.0 34.0 41.0 21 38.49476385916057 40.0 38.0 41.0 34.0 41.0 22 38.45561294671221 40.0 38.0 41.0 34.0 41.0 23 38.36974332115165 40.0 38.0 41.0 34.0 41.0 24 38.280063579507186 40.0 38.0 41.0 34.0 41.0 25 38.24509569170051 40.0 38.0 41.0 34.0 41.0 26 38.053914165983 40.0 37.0 41.0 33.0 41.0 27 37.940821374557764 40.0 37.0 41.0 33.0 41.0 28 37.83398952154991 40.0 37.0 41.0 33.0 41.0 29 37.7157929297659 40.0 37.0 41.0 33.0 41.0 30 37.62034011503528 40.0 37.0 41.0 33.0 41.0 31 37.5277589765819 40.0 37.0 41.0 33.0 41.0 32 37.35932010638829 39.0 36.0 41.0 32.0 41.0 33 37.20176624072845 39.0 36.0 41.0 32.0 41.0 34 37.1117682650892 39.0 36.0 41.0 31.0 41.0 35 36.98679314902491 39.0 36.0 41.0 31.0 41.0 36 36.78600684469452 39.0 35.0 41.0 31.0 41.0 37 36.70267411885633 39.0 35.0 41.0 31.0 41.0 38 36.61464723130817 39.0 35.0 40.0 30.0 41.0 39 36.45399514041269 39.0 35.0 40.0 30.0 41.0 40 36.28580048326706 39.0 35.0 40.0 30.0 41.0 41 36.15538903334812 39.0 35.0 40.0 29.0 41.0 42 35.8760906173403 39.0 35.0 40.0 28.0 41.0 43 34.64650764126085 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 7.0 10 19.0 11 24.0 12 20.0 13 24.0 14 20.0 15 44.0 16 80.0 17 134.0 18 212.0 19 411.0 20 728.0 21 1335.0 22 2470.0 23 4156.0 24 6843.0 25 10635.0 26 16071.0 27 23393.0 28 32798.0 29 43959.0 30 57484.0 31 73034.0 32 92783.0 33 119955.0 34 161236.0 35 219222.0 36 323143.0 37 539212.0 38 964855.0 39 872249.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.96884671439522 18.219527062226383 12.180343064657857 24.63128315872054 2 17.771616219335282 21.85617057117815 35.41274248168683 24.959470727799744 3 20.618534732927376 24.60363745661784 29.18561817864731 25.59220963180747 4 14.349296997273001 15.323149097813635 33.695372401065676 36.63218150384769 5 14.360904827567644 37.87578948667034 32.735343151576394 15.02796253418562 6 34.14933950324094 33.85488193378602 16.412182277703042 15.58359628527 7 28.444763831122334 31.198511281745596 21.81436555917498 18.542359327957094 8 27.94481401956733 33.2616769445499 20.462642132835075 18.3308669030477 9 28.111557417543747 13.631602233862452 19.93008385115285 38.326756497440954 10 17.593096761639654 26.689878588824296 32.038144339724745 23.67888030981131 11 35.335356946389204 21.994146737554807 21.222394252385634 21.44810206367035 12 21.964958932393642 26.32919470256757 29.591023053599574 22.114823311439206 13 30.230266828690294 19.273456368857595 26.071915835940423 24.424360966511692 14 22.882426137469235 20.888655112295947 26.40994482635639 29.818973923878428 15 25.90534066738856 26.7565254791875 23.4524435043535 23.885690349070448 16 23.855633358549056 25.5834056252555 26.315596157415637 24.24536485877981 17 23.547493129229917 26.404561484770472 26.168115028551338 23.879830357448274 18 23.666459370631294 24.064854686226887 28.29812384938083 23.97056209376099 19 23.96565540221132 25.171551955695097 28.287245013259284 22.5755476288343 20 23.812482511149405 24.31759135839092 28.28960022520312 23.58032590525655 21 24.530738039308485 24.849841219461453 28.138277857811367 22.48114288341869 22 24.370639703602183 24.603609418380408 27.187136729586342 23.838614148431063 23 22.95047493970377 25.064389812250354 28.03933091793264 23.945804330113234 24 23.01555168877108 26.189199783096196 27.573195220714204 23.222053307418523 25 23.621177617187215 25.160028240112737 27.17079043716659 24.048003705533457 26 23.446863895105587 25.790299779226917 27.718769749433488 23.044066576234005 27 23.940000414965915 25.55169437872593 26.941213349116993 23.567091857191162 28 22.891370335208343 26.125188487051098 27.881055067659073 23.102386110081486 29 22.977896335907054 26.026241547172376 28.042134741675305 22.953727375245265 30 22.936399744515583 26.596567334668325 28.00907765974926 22.457955261066832 31 23.63225272097075 25.998848189206512 27.03242173546596 23.336477354356777 32 22.3388207902409 26.474124351826045 27.434265754265034 23.752789103668018 33 22.32642788929831 26.00204454827315 27.89482184223557 23.77670572019297 34 23.02017799794648 26.075336500906477 27.893055433277684 23.011430067869355 35 23.123274596964354 26.256014902883955 27.982833869517894 22.637876630633794 36 22.507835285448884 26.558659637667464 27.46465920363555 23.4688458732481 37 22.7498333126785 26.238182583880594 27.84025943220326 23.171724671237648 38 22.457310381606018 25.85391853994804 28.14497899655634 23.5437920818896 39 22.628007171059604 25.43068134599241 28.087248265694825 23.85406321725316 40 22.766235681573104 25.76425225665754 28.388014438570746 23.08149762319861 41 21.656454205987956 26.134693449538744 28.719314252004313 23.489538092468987 42 22.493507746123854 26.322914137384 28.327535960441413 22.856042156050734 43 21.752485169174314 25.502851769128664 28.379462776155613 24.365200285541412 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 509.0 1 783.5 2 1058.0 3 4082.0 4 7106.0 5 7106.0 6 10009.5 7 12913.0 8 12028.0 9 11143.0 10 14986.5 11 18830.0 12 18830.0 13 29362.5 14 39895.0 15 51370.0 16 62845.0 17 54350.5 18 45856.0 19 45856.0 20 47574.0 21 49292.0 22 39739.0 23 30186.0 24 34978.0 25 39770.0 26 39770.0 27 45054.0 28 50338.0 29 55111.5 30 59885.0 31 65595.5 32 71306.0 33 71306.0 34 81736.0 35 92166.0 36 107064.0 37 121962.0 38 139067.5 39 156173.0 40 156173.0 41 171602.0 42 187031.0 43 200592.0 44 214153.0 45 237100.0 46 260047.0 47 260047.0 48 290006.0 49 319965.0 50 320499.0 51 321033.0 52 298795.0 53 276557.0 54 276557.0 55 265310.5 56 254064.0 57 241300.0 58 228536.0 59 212697.5 60 196859.0 61 196859.0 62 167689.5 63 138520.0 64 120403.5 65 102287.0 66 87141.0 67 71995.0 68 71995.0 69 59395.5 70 46796.0 71 39775.0 72 32754.0 73 24994.0 74 17234.0 75 17234.0 76 13591.0 77 9948.0 78 8496.5 79 7045.0 80 5643.5 81 4242.0 82 4242.0 83 3620.0 84 2998.0 85 2512.0 86 2026.0 87 1325.0 88 624.0 89 624.0 90 488.5 91 353.0 92 250.0 93 147.0 94 118.5 95 90.0 96 90.0 97 52.5 98 15.0 99 10.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3566558.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.33126373546079 #Duplication Level Percentage of deduplicated Percentage of total 1 83.70149913462429 43.802052262674664 2 8.623931012355305 9.026024164879695 3 2.704593195469501 4.246043394277413 4 1.3656028139919265 2.8585488406759563 5 0.7822212859330516 2.0467314206826908 6 0.5377570320358954 1.6884903041441444 7 0.37523564866820613 1.3745588985381818 8 0.2874611818231911 1.203456553575733 9 0.2130791806762919 1.0035632520456237 >10 1.240410545646377 11.713513525314204 >50 0.08669601030021772 3.115092525385591 >100 0.065930392323955 7.224937589163435 >500 0.010512895660331721 3.7720396591130543 >1k 0.004802845728780804 4.3284483195202945 >5k 5.336495254200893E-5 0.15348434109761375 >10k+ 2.1345981016803573E-4 2.4430149489117996 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 29095 0.8157725179290509 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 22546 0.6321501010217694 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 20741 0.5815410824666247 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15098 0.42332130866790896 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5496 0.1540981528969948 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4998 0.14013511065851164 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 4893 0.137191095728711 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG 4050 0.11355486157802565 No Hit GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3870 0.10850797884122451 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3818 0.10704999049503752 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3572 0.10015258408807597 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.8038237426673E-5 0.0 0.0 0.0 2.8038237426673E-5 3 2.8038237426673E-5 0.0 0.0 0.0 2.8038237426673E-5 4 2.8038237426673E-5 0.0 0.0 2.8038237426673E-5 8.4114712280019E-5 5 2.8038237426673E-5 0.0 0.0 2.8038237426673E-5 8.4114712280019E-5 6 2.8038237426673E-5 0.0 0.0 2.8038237426673E-5 8.4114712280019E-5 7 2.8038237426673E-5 0.0 0.0 2.8038237426673E-5 8.4114712280019E-5 8 2.8038237426673E-5 0.0 0.0 5.6076474853346E-5 8.4114712280019E-5 9 2.8038237426673E-5 0.0 0.0 5.6076474853346E-5 1.68229424560038E-4 10 2.8038237426673E-5 0.0 0.0 1.96267661986711E-4 1.68229424560038E-4 11 2.8038237426673E-5 0.0 0.0 2.8038237426673E-4 1.68229424560038E-4 12 2.8038237426673E-5 0.0 0.0 3.64497086546749E-4 1.68229424560038E-4 13 2.8038237426673E-5 0.0 0.0 5.32726511106787E-4 1.68229424560038E-4 14 2.8038237426673E-5 0.0 0.0 8.97223597653536E-4 2.52344136840057E-4 15 2.8038237426673E-5 0.0 0.0 0.001317797159053631 3.08420611693403E-4 16 2.8038237426673E-5 0.0 0.0 0.002887938454947319 3.36458849120076E-4 17 2.8038237426673E-5 0.0 0.0 0.004402003275987661 3.36458849120076E-4 18 2.8038237426673E-5 0.0 0.0 0.005102959211654486 3.64497086546749E-4 19 2.8038237426673E-5 0.0 0.0 0.006588985795268155 3.64497086546749E-4 20 2.8038237426673E-5 0.0 0.0 0.008299318278295208 3.92535323973422E-4 21 2.8038237426673E-5 0.0 0.0 0.012028403856042718 3.92535323973422E-4 22 2.8038237426673E-5 0.0 0.0 0.018365045514470813 3.92535323973422E-4 23 2.8038237426673E-5 0.0 0.0 0.030533640557646898 5.32726511106787E-4 24 2.8038237426673E-5 2.8038237426673E-5 0.0 0.048085577186744194 5.32726511106787E-4 25 2.8038237426673E-5 2.8038237426673E-5 0.0 0.05604843661591933 5.6076474853346E-4 26 2.8038237426673E-5 2.8038237426673E-5 0.0 0.06771234338541529 5.6076474853346E-4 27 2.8038237426673E-5 2.8038237426673E-5 0.0 0.09213364818404747 5.6076474853346E-4 28 2.8038237426673E-5 2.8038237426673E-5 0.0 0.14801385537540676 5.6076474853346E-4 29 2.8038237426673E-5 2.8038237426673E-5 0.0 0.21550189286140867 5.6076474853346E-4 30 2.8038237426673E-5 2.8038237426673E-5 0.0 0.3159909357986047 5.6076474853346E-4 31 2.8038237426673E-5 2.8038237426673E-5 0.0 0.577139079190637 5.6076474853346E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGCGG 615 0.0 17.747969 29 GTAATAC 240 0.0 16.958334 3 TCTAGCG 650 0.0 16.792309 28 CGCAATA 670 0.0 16.291044 36 TAATACT 450 0.0 16.033333 4 AAGACGG 650 0.0 15.938462 5 GCGCAAT 715 0.0 15.783216 35 TAGCGGC 695 0.0 15.438849 30 CAAGACG 705 0.0 14.957447 4 GGCGCAA 950 0.0 14.8 34 CGGCGCA 960 0.0 14.645834 33 GACGTCG 215 1.2732926E-11 14.627907 37 CGAACGA 455 0.0 14.23077 16 TCTATAC 425 0.0 13.929411 3 CGGTCCA 800 0.0 13.64375 10 ATACCGT 665 0.0 13.631578 6 ACGAACG 475 0.0 13.631578 15 TAATACC 315 0.0 13.5079365 4 GTTACGG 440 0.0 13.454545 25 GCAATAC 800 0.0 13.4125 37 >>END_MODULE