##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558182_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 26858691 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.949127267594687 33.0 32.0 34.0 25.0 34.0 2 31.14036916393282 33.0 32.0 34.0 25.0 34.0 3 31.186834161054236 33.0 32.0 34.0 25.0 34.0 4 31.00567175816573 33.0 32.0 34.0 25.0 34.0 5 30.958584206505076 33.0 32.0 34.0 25.0 34.0 6 34.256702606988554 38.0 34.0 38.0 26.0 38.0 7 34.4285997035373 38.0 34.0 38.0 26.0 38.0 8 34.55431163789777 38.0 35.0 38.0 26.0 38.0 9 34.70720397356669 38.0 35.0 38.0 26.0 38.0 10 34.602466292940335 38.0 35.0 38.0 26.0 38.0 11 34.62620207366025 38.0 35.0 38.0 26.0 38.0 12 34.609635815833315 38.0 35.0 38.0 26.0 38.0 13 34.59965830054786 38.0 35.0 38.0 26.0 38.0 14 34.56523815698986 38.0 35.0 38.0 26.0 38.0 15 34.568501123156004 38.0 35.0 38.0 26.0 38.0 16 34.564327166949425 38.0 35.0 38.0 26.0 38.0 17 34.5709733955389 38.0 35.0 38.0 26.0 38.0 18 34.49238624473546 38.0 35.0 38.0 25.0 38.0 19 34.51413719305978 38.0 35.0 38.0 25.0 38.0 20 34.40280265333854 38.0 35.0 38.0 24.0 38.0 21 34.47695459171856 38.0 35.0 38.0 25.0 38.0 22 34.500357072502155 38.0 35.0 38.0 25.0 38.0 23 34.49847049508109 38.0 35.0 38.0 25.0 38.0 24 34.48639120201353 38.0 35.0 38.0 25.0 38.0 25 34.48249920295818 38.0 35.0 38.0 25.0 38.0 26 34.46848314387324 38.0 35.0 38.0 24.0 38.0 27 34.453686667008455 38.0 35.0 38.0 24.0 38.0 28 34.450746501383854 38.0 35.0 38.0 24.0 38.0 29 34.39717445649157 38.0 35.0 38.0 24.0 38.0 30 34.39227607927728 38.0 35.0 38.0 24.0 38.0 31 34.360744460703614 38.0 35.0 38.0 24.0 38.0 32 34.35566379612469 38.0 35.0 38.0 24.0 38.0 33 34.35094934447848 38.0 35.0 38.0 24.0 38.0 34 34.30865692598348 38.0 35.0 38.0 16.0 38.0 35 34.337232294753306 38.0 35.0 38.0 24.0 38.0 36 34.32142076469773 38.0 35.0 38.0 16.0 38.0 37 34.32196341958735 38.0 35.0 38.0 16.0 38.0 38 34.2942821003451 38.0 35.0 38.0 16.0 38.0 39 34.279030240155784 38.0 34.0 38.0 16.0 38.0 40 34.260543523882085 38.0 34.0 38.0 16.0 38.0 41 34.267188039804324 38.0 34.0 38.0 16.0 38.0 42 34.23064463566002 38.0 34.0 38.0 16.0 38.0 43 34.200604340695534 38.0 34.0 38.0 16.0 38.0 44 34.16910660314756 38.0 34.0 38.0 16.0 38.0 45 34.11773648983861 38.0 34.0 38.0 16.0 38.0 46 34.06579993045826 38.0 34.0 38.0 16.0 38.0 47 34.057008958478285 38.0 34.0 38.0 16.0 38.0 48 33.9500476773049 38.0 34.0 38.0 16.0 38.0 49 33.95320672924827 38.0 34.0 38.0 16.0 38.0 50 33.60438905976468 38.0 33.0 38.0 16.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 3.0 7 4.0 8 10.0 9 15.0 10 18.0 11 25.0 12 25.0 13 34.0 14 32.0 15 101.0 16 485.0 17 7088.0 18 52076.0 19 163613.0 20 280903.0 21 350263.0 22 384026.0 23 408612.0 24 435943.0 25 467792.0 26 506777.0 27 550116.0 28 605140.0 29 673365.0 30 756075.0 31 860435.0 32 1001798.0 33 1205241.0 34 1541961.0 35 2185676.0 36 4121881.0 37 1.0299158E7 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.94474022855724 20.877103702822343 14.47117766765708 23.70697840096334 2 14.594763847203213 21.823164262637558 40.90327329553435 22.678798594624883 3 16.54733470227585 28.238538680668245 31.719047482885237 23.495079134170663 4 11.949704502334527 18.26092505854234 39.864295477038404 29.92507496208473 5 12.420105632600606 38.674423418114515 35.97670874617574 12.928762203109137 6 27.835014158669136 40.11658915255156 19.0610776077963 12.987319080983001 7 24.95585112661074 33.135752154200674 24.862973737051806 17.045422982136788 8 24.501181211321235 35.52419931506164 21.61333930110432 18.361280172512814 9 26.032354949344256 15.768054180730468 21.688454991484463 36.51113587844081 10 15.338607303322155 29.027078196425133 33.62900329786016 22.005311202392555 11 31.613430180222025 25.013732444801118 25.132446000020774 18.24039137495608 12 21.94222814858921 27.27877326735213 30.936201620157995 19.842796963900664 13 27.022690243292192 22.87178534408807 27.506456119239388 22.599068293380355 14 21.879134169786848 21.954477238395807 28.62791246979166 27.538476122025692 15 22.563112390385744 29.717871690647605 25.616737276808088 22.102278642158566 16 21.965669670407614 29.04376414257484 26.38395199971703 22.606614187300515 17 20.61526801390598 28.790058144132697 28.142327650773602 22.452346191187726 18 20.804099762261774 27.94569978933697 29.882339441249457 21.367861007151806 19 22.115772620324247 27.283258636379916 30.32119454163558 20.279774201660253 20 23.105435564267513 26.78263707722485 29.635394051247623 20.476533307260016 21 22.640199604689663 26.989309583040153 29.12342765919849 21.24706315307169 22 22.244598071145393 26.910109019092516 29.319529741302162 21.52576316845992 23 21.672235276272154 27.131910201325184 29.397798219531758 21.7980563028709 24 21.472996106492246 27.7501305431698 29.01507375205049 21.761799598287464 25 21.961320057935804 26.99368229276019 29.511911216928528 21.53308643237548 26 21.639568968190975 27.249190762587094 29.411044351426607 21.700195917795323 27 21.300287772243113 27.33266282908289 29.330950664099674 22.036098734574328 28 21.302488568704387 27.23122120580919 29.858553820097573 21.60773640538885 29 21.820655487506897 27.250612167999044 29.359780157546805 21.568952186947254 30 21.379459767956664 27.688736225305654 29.354859836861554 21.57694416987613 31 21.99785562845032 27.19599068945388 29.560034472582224 21.246119209513576 32 21.53108089913479 27.29133441005822 29.419655809459016 21.757928881347976 33 21.468418394181434 27.434434763234485 29.44822191758849 21.648924924995587 34 21.944714980506138 26.915547349825925 29.15216054330972 21.987577126358214 35 21.781749625969926 27.35785647089714 29.372644463182045 21.48774943995089 36 22.198179692083933 27.269959222847895 28.755470862902115 21.776390222166057 37 22.189053981683816 26.803404860636608 29.145556261888654 21.86198489579092 38 22.1234317802341 27.440090903390796 29.160901056999894 21.27557625937521 39 21.80010289161786 27.272548889435893 29.37467446107099 21.552673757875255 40 21.943002261475776 27.159487454426163 29.315885425461236 21.58162485863682 41 21.575866078579207 27.22740508313605 29.359001821610548 21.8377270166742 42 21.834812061200665 27.372183304716437 28.923304211542767 21.86970042254013 43 21.817909538704576 27.173458995389392 29.179417793161228 21.8292136727448 44 21.720244822687484 27.268721327003455 28.96765390917091 22.043379941138152 45 21.80854070197483 27.142493642276982 29.15160187961182 21.897363776136363 46 21.991215042684942 27.269546593321426 28.97558524433372 21.763653119659914 47 21.75039418428687 27.436380584761423 28.972314241166764 21.84091098978494 48 22.002069870875832 27.29341745168632 28.67263014268452 22.03188253475333 49 21.727378166973967 27.517242383310116 29.24165012323475 21.513729326481172 50 22.223544805899902 27.104883855971902 28.818829434760417 21.852741903367775 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 7372.0 1 7108.5 2 6845.0 3 15465.5 4 24086.0 5 24808.0 6 25530.0 7 20384.5 8 15239.0 9 20246.0 10 25253.0 11 37182.0 12 49111.0 13 96595.0 14 144079.0 15 191600.0 16 239121.0 17 229041.5 18 218962.0 19 212472.0 20 205982.0 21 250164.0 22 294346.0 23 348090.0 24 401834.0 25 461612.0 26 521390.0 27 592729.0 28 664068.0 29 749355.5 30 834643.0 31 973352.5 32 1112062.0 33 1201757.0 34 1291452.0 35 1383930.5 36 1476409.0 37 1512346.5 38 1548284.0 39 1615174.5 40 1682065.0 41 1728713.0 42 1775361.0 43 1766146.5 44 1756932.0 45 1760538.0 46 1764144.0 47 1731752.5 48 1699361.0 49 1646071.0 50 1592781.0 51 1563380.0 52 1533979.0 53 1391433.5 54 1248888.0 55 1147237.0 56 1045586.0 57 959495.5 58 873405.0 59 808981.0 60 744557.0 61 664595.0 62 584633.0 63 516856.0 64 449079.0 65 385786.5 66 322494.0 67 275971.0 68 229448.0 69 195847.5 70 162247.0 71 136874.5 72 111502.0 73 90870.5 74 70239.0 75 57569.5 76 44900.0 77 34842.5 78 24785.0 79 19399.0 80 14013.0 81 11679.0 82 9345.0 83 7887.0 84 6429.0 85 4946.5 86 3464.0 87 3015.5 88 2567.0 89 1428.5 90 290.0 91 195.5 92 101.0 93 61.0 94 21.0 95 12.5 96 4.0 97 2.5 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.023590129541309363 2 0.010957347102284323 3 1.1169568911604815E-5 4 0.0029040879170172517 5 0.0032912996392862187 6 0.006132093332471042 7 0.002609955935678325 8 0.004065723083824152 9 0.0027142052455199697 10 0.0013626874072157874 11 0.002844516882822026 12 0.0034997982589695083 13 0.0016791585263779235 14 8.004857719983449E-4 15 0.0015451236994386659 16 0.001921165852796028 17 0.002259976109781374 18 5.882639626778535E-4 19 0.0014483207688714243 20 0.004069446273461354 21 0.0029971676579472915 22 0.0013701337864901906 23 0.002606232746041123 24 0.006236342642312687 25 0.002561554470394704 26 0.0037157432579272014 27 0.0011095105118860782 28 0.0031386488641609524 29 0.004750789977069248 30 0.005138001699338215 31 0.005231081440268254 32 0.007219264706533911 33 0.0034886286900579037 34 0.001835532491140391 35 0.004560907305571966 36 9.9781482277003E-4 37 0.0062326194526754865 38 0.004344962306614272 39 0.004855039286910892 40 0.005398624973942327 41 0.006284744107596309 42 0.005945933850610962 43 0.0046912189428740215 44 0.0032987460185606218 45 0.0029971676579472915 46 0.0018876571460612135 47 0.002587616797855115 48 0.0036375562755459672 49 0.0022339137823209625 50 0.0018131933533171813 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2.6858691E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.74541774023726 #Duplication Level Percentage of deduplicated Percentage of total 1 77.16504395450654 31.441219508701383 2 12.532659519713937 10.212968950538112 3 4.12227951028825 5.038920020661462 4 1.8345465312347895 2.9899745911625883 5 1.016841968157711 2.0715825384195483 6 0.6641660241535458 1.6237033261805238 7 0.4392216914817582 1.2527389909998492 8 0.31982003828723826 1.0424960849369758 9 0.24271009211223657 0.8900391683596088 >10 1.3882544213220902 10.398636459841693 >50 0.1266488427725053 3.6153109498047753 >100 0.11414155604056045 9.987867459555558 >500 0.018946891878001536 5.398781089458526 >1k 0.013990169447598242 10.694107729034025 >5k 5.350599870904045E-4 1.4738730120621144 >10k+ 1.9372861601490036E-4 1.8677801202828785 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 125318 0.46658267895483063 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 70579 0.2627790014040521 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 61907 0.2304915008702397 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8615948186008022E-5 0.0 0.0 0.0 3.7231896372016046E-6 2 2.606232746041123E-5 0.0 0.0 0.0 3.7231896372016046E-6 3 2.606232746041123E-5 3.7231896372016046E-6 0.0 0.0 3.7231896372016046E-6 4 2.606232746041123E-5 3.7231896372016046E-6 0.0 7.446379274403209E-6 3.7231896372016046E-6 5 2.606232746041123E-5 3.7231896372016046E-6 0.0 1.1169568911604813E-5 3.7231896372016046E-6 6 2.606232746041123E-5 3.7231896372016046E-6 0.0 1.1169568911604813E-5 3.7231896372016046E-6 7 2.606232746041123E-5 3.7231896372016046E-6 0.0 1.1169568911604813E-5 3.7231896372016046E-6 8 2.606232746041123E-5 3.7231896372016046E-6 0.0 1.4892758548806418E-5 3.7231896372016046E-6 9 4.095508600921765E-5 3.7231896372016046E-6 0.0 2.9785517097612837E-5 3.7231896372016046E-6 10 1.3775801657645937E-4 3.7231896372016046E-6 0.0 4.467827564641925E-5 3.7231896372016046E-6 11 1.4520439585086257E-4 1.1169568911604813E-5 0.0 6.329422383242728E-5 3.7231896372016046E-6 12 1.712667233112738E-4 1.4892758548806418E-5 0.0 6.701741346962888E-5 3.7231896372016046E-6 13 1.712667233112738E-4 1.4892758548806418E-5 0.0 6.701741346962888E-5 3.7231896372016046E-6 14 1.749899129484754E-4 1.4892758548806418E-5 0.0 6.701741346962888E-5 3.7231896372016046E-6 15 1.9360586113448342E-4 1.4892758548806418E-5 0.0 6.701741346962888E-5 3.7231896372016046E-6 16 1.9732905077168503E-4 1.4892758548806418E-5 0.0 6.701741346962888E-5 1.4892758548806418E-5 17 2.2339137823209628E-4 1.4892758548806418E-5 0.0 7.074060310683049E-5 1.4892758548806418E-5 18 2.308377575064995E-4 1.4892758548806418E-5 0.0 7.818698238123369E-5 1.8615948186008022E-5 19 2.420073264181043E-4 1.4892758548806418E-5 0.0 7.818698238123369E-5 1.8615948186008022E-5 20 2.420073264181043E-4 1.4892758548806418E-5 0.0 8.56333616556369E-5 2.9785517097612837E-5 21 2.494537056925075E-4 1.4892758548806418E-5 0.0 9.307974093004011E-5 2.9785517097612837E-5 22 2.494537056925075E-4 1.4892758548806418E-5 0.0 9.680293056724171E-5 2.9785517097612837E-5 23 2.643464642413139E-4 1.8615948186008022E-5 0.0 1.0424930984164492E-4 3.350870673481444E-5 24 2.8668560206452357E-4 1.8615948186008022E-5 0.0 1.1169568911604814E-4 3.350870673481444E-5 25 3.0157836061333E-4 1.8615948186008022E-5 0.0 1.1914206839045135E-4 3.350870673481444E-5 26 3.0530155025053156E-4 2.2339137823209626E-5 3.7231896372016046E-6 1.2658844766485456E-4 3.350870673481444E-5 27 3.1274792952493477E-4 2.2339137823209626E-5 3.7231896372016046E-6 1.3031163730205616E-4 3.350870673481444E-5 28 3.164711191621364E-4 2.2339137823209626E-5 3.7231896372016046E-6 1.749899129484754E-4 3.7231896372016045E-5 29 3.276406880737412E-4 2.2339137823209626E-5 3.7231896372016046E-6 2.1594499895769307E-4 3.7231896372016045E-5 30 3.4625663625974923E-4 2.2339137823209626E-5 3.7231896372016046E-6 3.276406880737412E-4 3.7231896372016045E-5 31 3.6114939480855565E-4 2.606232746041123E-5 3.7231896372016046E-6 7.111292207055065E-4 3.7231896372016045E-5 32 3.6114939480855565E-4 2.9785517097612837E-5 3.7231896372016046E-6 0.001120680080797683 3.7231896372016045E-5 33 3.983812911805717E-4 2.9785517097612837E-5 3.7231896372016046E-6 0.001563739647624674 3.7231896372016045E-5 34 4.281668082781845E-4 3.350870673481444E-5 3.7231896372016046E-6 0.00201796878336327 3.7231896372016045E-5 35 4.281668082781845E-4 3.350870673481444E-5 3.7231896372016046E-6 0.0027067588662455667 3.7231896372016045E-5 36 4.3188999791538615E-4 3.350870673481444E-5 3.7231896372016046E-6 0.0035742620517135405 3.7231896372016045E-5 37 4.3188999791538615E-4 3.7231896372016045E-5 3.7231896372016046E-6 0.004702388511785626 3.7231896372016045E-5 38 4.5050594610139414E-4 4.095508600921765E-5 3.7231896372016046E-6 0.006091138246461825 3.7231896372016045E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24955 0.0 31.271374 1 GTATCAA 68035 0.0 26.65713 1 TATCAAC 96090 0.0 18.700287 2 ATCAACG 97395 0.0 18.366789 3 TCAACGC 98100 0.0 18.160822 4 CAACGCA 98995 0.0 17.963062 5 AACGCAG 102590 0.0 17.60165 6 ACGCAGA 116440 0.0 15.4132595 7 CGCAGAG 116940 0.0 15.292714 8 AGAGTAC 122210 0.0 14.528549 11 TCTAGAC 5165 0.0 14.524794 3 GCAGAGT 122680 0.0 14.433547 9 CAGAGTA 123005 0.0 14.412972 10 GTATTAG 8525 0.0 14.224042 1 GAGTACT 71615 0.0 13.875445 12 AGTACTT 72680 0.0 13.732457 13 ACCGTCG 1410 0.0 12.949992 8 GTACTTT 77380 0.0 12.929823 14 GTACATG 96910 0.0 12.848728 1 CTAGACA 7435 0.0 12.694133 4 >>END_MODULE