##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558179_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15162246 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.379209386261113 31.0 30.0 33.0 26.0 34.0 2 30.489089611130172 31.0 30.0 34.0 26.0 34.0 3 30.732345458581797 31.0 30.0 34.0 27.0 34.0 4 34.355937306385876 35.0 35.0 37.0 30.0 37.0 5 33.9366589883847 35.0 35.0 37.0 28.0 37.0 6 33.99921515585488 35.0 35.0 37.0 29.0 37.0 7 33.84917590705229 35.0 35.0 37.0 28.0 37.0 8 33.83260936407442 35.0 35.0 37.0 28.0 37.0 9 35.17864596049952 38.0 35.0 39.0 28.0 39.0 10 35.0890895715582 38.0 35.0 39.0 27.0 39.0 11 35.19724168833562 38.0 35.0 39.0 27.0 39.0 12 35.06706420671449 38.0 35.0 39.0 27.0 39.0 13 35.074450183699696 38.0 35.0 39.0 27.0 39.0 14 35.90773009486853 39.0 35.0 40.0 27.0 41.0 15 35.884597572153886 38.0 35.0 40.0 27.0 41.0 16 35.8071582534672 38.0 34.0 40.0 27.0 41.0 17 35.82255425746291 38.0 34.0 40.0 27.0 41.0 18 35.75386469788183 38.0 34.0 40.0 27.0 41.0 19 35.84456319993753 39.0 34.0 40.0 27.0 41.0 20 35.81939509489557 39.0 34.0 40.0 27.0 41.0 21 35.72008995237249 39.0 34.0 40.0 27.0 41.0 22 35.69352185685419 39.0 34.0 40.0 27.0 41.0 23 35.626236970433006 39.0 34.0 40.0 27.0 41.0 24 35.593517279695895 39.0 34.0 40.0 26.0 41.0 25 35.50761760493795 38.0 34.0 40.0 26.0 41.0 26 35.36909307499694 38.0 34.0 40.0 25.0 41.0 27 35.17010936242559 38.0 34.0 40.0 25.0 41.0 28 35.13245544228737 38.0 34.0 40.0 25.0 41.0 29 35.04158447237962 38.0 33.0 40.0 25.0 41.0 30 34.92190952448602 38.0 33.0 40.0 24.0 41.0 31 34.82492996090421 38.0 33.0 40.0 24.0 41.0 32 34.7158683482645 38.0 33.0 40.0 24.0 41.0 33 34.606217574889634 38.0 33.0 40.0 24.0 41.0 34 34.54130548996501 38.0 33.0 40.0 24.0 41.0 35 34.45614257940413 38.0 33.0 40.0 24.0 41.0 36 34.364863424587625 38.0 33.0 40.0 23.0 41.0 37 34.271870077823564 38.0 32.0 40.0 23.0 41.0 38 34.18603939020644 38.0 32.0 40.0 23.0 41.0 39 34.10710319566112 38.0 32.0 40.0 22.0 41.0 40 33.95527351290831 38.0 32.0 40.0 22.0 41.0 41 33.829828245762535 37.0 31.0 40.0 21.0 41.0 42 33.743489585909636 37.0 31.0 40.0 21.0 41.0 43 33.60908047528051 37.0 31.0 40.0 20.0 41.0 44 33.44346213615054 37.0 31.0 40.0 19.0 41.0 45 33.29917685018433 37.0 30.0 40.0 19.0 41.0 46 33.106711103355 37.0 30.0 40.0 18.0 41.0 47 32.97608586485142 37.0 30.0 40.0 18.0 41.0 48 32.85268290726849 37.0 30.0 40.0 18.0 41.0 49 32.70900478728547 36.0 30.0 40.0 17.0 41.0 50 31.397985166577563 35.0 28.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 58.0 3 104.0 4 143.0 5 176.0 6 222.0 7 354.0 8 800.0 9 2135.0 10 5443.0 11 13517.0 12 28064.0 13 48067.0 14 68273.0 15 83308.0 16 94067.0 17 102080.0 18 107975.0 19 114785.0 20 121453.0 21 128190.0 22 137194.0 23 149616.0 24 166642.0 25 187652.0 26 212425.0 27 242145.0 28 278270.0 29 326170.0 30 389564.0 31 475566.0 32 588156.0 33 741025.0 34 946294.0 35 1212387.0 36 1556951.0 37 1992792.0 38 2339637.0 39 2300546.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.08140410844574 20.13306522006194 13.374524585634228 24.41100608585809 2 14.91565293495045 22.344042470968873 37.23037060259041 25.509933991490268 3 17.560193848638374 28.329901209849083 29.08426047274728 25.025644468765257 4 12.691625447070528 18.660568580451063 36.03171142021906 32.61609455225935 5 13.144560990722368 38.87704342028594 33.92791678742625 14.050478801565438 6 30.69469755266841 37.19077193344704 18.15280344592943 13.961727067955119 7 26.667571671322627 32.38979342081404 23.09269114414026 17.849943763723072 8 27.786873642519144 32.911708119402775 20.38183414059316 18.919584097484922 9 27.6125884370408 14.460031721630685 19.88014411151069 38.04723572981783 10 16.675227814824048 28.34427174753164 31.705409077869025 23.27509135977529 11 33.161254083215944 24.00899976281004 22.55152153798298 20.278224615991036 12 23.54871041224659 25.80991414181557 29.737623483184716 20.903751962753123 13 29.102322810725656 21.58728368161311 25.164290817406933 24.146102690254303 14 23.342738179031254 20.92121746779824 26.951325156986943 28.784719196183563 15 25.359982299229312 27.052130326542013 24.15733657759504 23.430550796633636 16 22.841851602298906 27.288324192928215 26.384738216822228 23.485085987950647 17 22.616063911187286 27.264326573327068 27.0657305132275 23.053879002258142 18 23.56064510629628 25.85707869094471 28.73605897921683 21.846217223542176 19 23.2537585183316 26.83178113041408 28.981556218481053 20.932904132773267 20 24.167003985475333 25.593745433000237 28.4283714643793 21.81087911714513 21 24.01291248604222 26.25126413478544 27.49442843687284 22.241394942299497 22 23.992657713363513 25.882339045005192 26.674867581423673 23.45013566020762 23 22.5170081761437 26.397921846775784 27.505582740750622 23.57948723632989 24 22.81132955403526 27.738053417797893 26.77202434382445 22.678592684342394 25 23.559108899497687 25.419265494255832 26.800237959000107 24.22138764724637 26 23.512616185209563 25.893153487407172 27.318613427817194 23.275616899566067 27 23.813528288130172 25.67581726946716 26.898938679634327 23.61171576276834 28 22.94849648505235 25.6833483982431 28.146794381204376 23.221360735500173 29 23.306705723631126 25.14864203544058 28.69604439396391 22.848607846964384 30 23.445904761314136 26.26436770613551 28.195943966284187 22.093783566266165 31 24.58222635757132 25.060763235866673 27.176053689149327 23.18095671741268 32 22.169881353120527 26.143007082018947 28.304630940674713 23.382480624185813 33 23.190834942211676 26.455013887750766 27.295945600184528 23.05820556985303 34 22.165433645688093 26.343839835634142 28.028401236226713 23.46232528245105 35 23.045332123122265 26.95003064006401 28.016245500462073 21.988391736351648 36 23.77821830351913 25.9438137942899 27.037848596116643 23.24011930607433 37 23.74297062668438 26.50431557021854 27.17027078010049 22.582443022996586 38 23.91050897022273 26.076319216165622 26.953639833147353 23.059531980464293 39 23.929149061374254 25.33151769789457 27.3662258302766 23.373107410454573 40 23.428974892796006 26.128688859353993 27.48867862629799 22.953657621552008 41 22.552889959940654 26.21419713177345 27.395352260925165 23.837560647360736 42 24.270995465167914 26.52872812300379 27.046063624852472 22.154212786975823 43 24.34073702375497 24.9589292126149 26.71452564328844 23.985808120341694 44 23.636453939928963 26.320026457385616 27.383110489398316 22.660409113287105 45 25.216317173854442 25.321617179599638 26.48034598874852 22.98171965779741 46 23.0345218548659 25.72331789707211 28.275574829388777 22.966585418673212 47 24.207800681598098 26.299519403884307 26.819335740326522 22.673344174191076 48 24.641586520000665 26.408793784649475 26.288992739626497 22.66062695572336 49 23.915222046104038 26.331111834579296 27.649988761033185 22.103677358283488 50 24.26462886266907 26.573424451589972 25.607359766633696 23.554586919107262 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2259.0 1 1954.0 2 1649.0 3 2961.5 4 4274.0 5 5316.0 6 6358.0 7 5698.5 8 5039.0 9 7132.0 10 9225.0 11 14620.0 12 20015.0 13 40592.0 14 61169.0 15 79987.5 16 98806.0 17 100852.5 18 102899.0 19 99376.0 20 95853.0 21 103683.5 22 111514.0 23 127420.5 24 143327.0 25 173435.0 26 203543.0 27 229097.0 28 254651.0 29 295858.0 30 337065.0 31 378286.5 32 419508.0 33 456103.0 34 492698.0 35 538178.5 36 583659.0 37 618786.5 38 653914.0 39 697501.5 40 741089.0 41 777167.0 42 813245.0 43 847030.5 44 880816.0 45 970550.0 46 1060284.0 47 1168864.5 48 1277445.0 49 1308692.5 50 1339940.0 51 1188860.5 52 1037781.0 53 929639.0 54 821497.0 55 779590.0 56 737683.0 57 704629.5 58 671576.0 59 631575.0 60 591574.0 61 517983.0 62 444392.0 63 390149.0 64 335906.0 65 289074.0 66 242242.0 67 207457.0 68 172672.0 69 151466.0 70 130260.0 71 108284.0 72 86308.0 73 74645.5 74 62983.0 75 53767.5 76 44552.0 77 34502.0 78 24452.0 79 18948.0 80 13444.0 81 11153.0 82 8862.0 83 7474.0 84 6086.0 85 5029.5 86 3973.0 87 3196.5 88 2420.0 89 1831.0 90 1242.0 91 1021.5 92 801.0 93 658.0 94 515.0 95 444.0 96 373.0 97 301.5 98 230.0 99 204.0 100 178.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.036063258701909996 2 0.00672064020066684 3 7.057001977147713E-4 4 0.005065212634064901 5 0.00836287710936757 6 0.02302429336656324 7 0.013869976783123029 8 0.018018438693053786 9 0.018954975404039745 10 0.017642504942869282 11 0.009246651188748685 12 0.01174628086102811 13 0.02279345685329205 14 0.029395381132847995 15 0.023637658958969535 16 0.051041250748734716 17 0.021995422050268807 18 0.034150613306234444 19 0.051905238841264016 20 0.039314755874558426 21 0.050203643972007835 22 0.05170078364379525 23 0.0376725189658577 24 0.04417551331115456 25 0.044149131995352135 26 0.04846247712904803 27 0.043502789758192814 28 0.05160185370953617 29 0.014292077835961769 30 0.031189310607412646 31 0.05504461542175216 32 0.04964963634015699 33 0.03775166291326496 34 0.01266303158516225 35 0.01553859500762618 36 0.017029139350462984 37 0.005711554871224224 38 0.0071493365824561875 39 0.004036341317770468 40 0.023274915866686244 41 0.00817820789875062 42 0.014892252770466855 43 0.0040759132914741 44 0.008323305135663938 45 0.01156161165041116 46 0.016402583100155476 47 0.01120546388707847 48 0.035944542780799095 49 0.0046826835549297905 50 0.012359646453434407 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1.5162246E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.89957614428105 #Duplication Level Percentage of deduplicated Percentage of total 1 73.84563452983069 27.248726142562376 2 9.759998905701222 7.20279645578044 3 5.119298262671454 5.666998081461929 4 3.073327601210995 4.536179433488229 5 2.0135362566434853 3.7149317210643455 6 1.380378084414401 3.0561219740247605 7 0.9395792849002103 2.4269054156735113 8 0.6943654194520453 2.0497431733621116 9 0.525231409253219 1.7442734741196477 >10 2.399205738932357 14.905781650688372 >50 0.12813218153185324 3.296734855049735 >100 0.09573336919753435 7.275160744364315 >500 0.014920210097420946 3.8099740954811905 >1k 0.009433642112537376 6.098900503314621 >5k 7.175609440245123E-4 1.8137802081841723 >10k+ 5.075431067490453E-4 5.1529920713802015 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 114230 0.7533844260276479 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 89649 0.5912646450928181 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 50409 0.33246393707106453 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 44922 0.296275367119093 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43987 0.2901087345502771 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 43275 0.28541286033744606 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 38781 0.25577345203342566 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 38359 0.2529902232162702 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28542 0.18824387890817756 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 26298 0.1734439607430192 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 24188 0.15952781665724194 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23725 0.15647417935311167 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 22093 0.14571060250572376 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 21326 0.14065198520060945 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 21234 0.14004521493715377 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 17087 0.11269438577899343 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.573927635786941E-5 0.0 0.0 0.0 2.6381315802421357E-5 2 2.8359914487602957E-4 0.0 0.0 1.3190657901210679E-5 2.6381315802421357E-5 3 4.352917107399524E-4 0.0 0.0 2.6381315802421357E-5 3.2976644753026695E-5 4 4.418870396905577E-4 0.0 0.0 5.935796055544805E-5 3.2976644753026695E-5 5 6.463422371593233E-4 0.0 0.0 6.595328950605339E-5 3.2976644753026695E-5 6 6.661282240111393E-4 0.0 0.0 6.595328950605339E-5 5.2762631604842714E-5 7 8.046301319738514E-4 0.0 0.0 7.254861845665873E-5 5.2762631604842714E-5 8 0.0012135405269113823 0.0 0.0 7.914394740726407E-5 7.254861845665873E-5 9 0.001226731184812593 0.0 0.0 9.892993425908008E-5 7.254861845665873E-5 10 0.010836125465844572 0.0 0.0 3.6274309228329364E-4 9.233460530847474E-5 11 0.010902078755350625 0.0 0.0 3.6274309228329364E-4 9.233460530847474E-5 12 0.012029880005904138 0.0 0.0 4.155057238881364E-4 9.233460530847474E-5 13 0.012076047308558376 0.0 0.0 4.221010528387417E-4 9.233460530847474E-5 14 0.012095833295410191 0.0 0.0 4.352917107399524E-4 9.233460530847474E-5 15 0.012260716519175326 0.0 0.0 4.418870396905577E-4 1.2531125006150145E-4 16 0.012287097834977747 0.0 0.0 4.6826835549297906E-4 2.2424118432058153E-4 17 0.014140385270097847 0.0 0.0 6.133655924062965E-4 2.2424118432058153E-4 18 0.014331649809665403 0.0 0.0 6.793188819123499E-4 2.4402717117239756E-4 19 0.014483342375529324 0.0 0.0 7.057001977147713E-4 2.4402717117239756E-4 20 0.014635034941393248 0.0 0.0 7.650581582702193E-4 2.704084869748189E-4 21 0.015202233231145307 0.0 0.0 9.101553951835368E-4 3.4295710543147764E-4 22 0.016917018758302694 0.0 0.0 0.0014311863822813586 3.4295710543147764E-4 23 0.017906318100893496 6.595328950605339E-6 0.0 0.0022819838169094472 3.4295710543147764E-4 24 0.018836259482928847 6.595328950605339E-6 0.0 0.002862372764562717 3.4295710543147764E-4 25 0.01884945014083006 6.595328950605339E-6 0.0 0.0029481120409205865 3.4295710543147764E-4 26 0.018935189417187928 6.595328950605339E-6 0.0 0.0031987345410435897 3.4295710543147764E-4 27 0.01894838007508914 6.595328950605339E-6 0.0 0.0034691430280184084 3.561477633326883E-4 28 0.019047310009348218 6.595328950605339E-6 0.0 0.004128675923078942 3.6274309228329364E-4 29 0.019192407246261537 6.595328950605339E-6 0.0 0.005190523884126402 3.6274309228329364E-4 30 0.019324313825273644 6.595328950605339E-6 0.0 0.006958072042888633 3.6274309228329364E-4 31 0.019878321457124492 6.595328950605339E-6 0.0 0.009022410004428104 3.6274309228329364E-4 32 0.019931084088729335 6.595328950605339E-6 0.0 0.011126319939671206 3.6274309228329364E-4 33 0.020168515930951127 6.595328950605339E-6 0.0 0.01381061882256758 3.8252907913510965E-4 34 0.02053125902323442 6.595328950605339E-6 0.0 0.01673894487663635 3.957197370363203E-4 35 0.02072911889175258 6.595328950605339E-6 0.0 0.02076209553650561 3.957197370363203E-4 36 0.02076209553650561 6.595328950605339E-6 0.0 0.02475226955162184 3.957197370363203E-4 37 0.02081485816811045 6.595328950605339E-6 0.0 0.031169524620560832 3.957197370363203E-4 38 0.02082804882601166 6.595328950605339E-6 0.0 0.03814738265030128 4.352917107399524E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATGCGA 3175 0.0 20.7896 20 GTACTAG 3545 0.0 20.665115 1 TGCGACG 3060 0.0 20.639643 22 CGACGAG 3020 0.0 20.621342 24 CAATGCG 3190 0.0 20.278208 19 CGTCATT 3385 0.0 19.50358 26 GTCGTCA 3345 0.0 19.407219 24 CATTGCG 3365 0.0 19.287859 29 ATCGTCA 3350 0.0 19.242493 10 GCTCGTC 3380 0.0 18.547117 39 AGGTCGT 3510 0.0 18.432402 22 GACGAGT 3475 0.0 17.795158 25 GTCAGCG 3580 0.0 17.634373 43 TAGGTCG 3690 0.0 17.35286 21 TCAGCGC 3680 0.0 17.216486 44 TAGGCAT 4305 0.0 16.964529 5 CGTCATC 3945 0.0 16.840963 12 CGACGAA 3420 0.0 16.786207 38 TCGTCAG 3695 0.0 16.78594 41 TCGACGA 3365 0.0 16.668102 37 >>END_MODULE