##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558178_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10612128 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.277150822153672 31.0 28.0 31.0 25.0 34.0 2 29.323496757671975 31.0 28.0 33.0 25.0 34.0 3 29.565202662463175 31.0 28.0 33.0 25.0 34.0 4 33.15602045131759 35.0 32.0 37.0 27.0 37.0 5 32.572974524996305 35.0 32.0 37.0 25.0 37.0 6 32.70365519526338 35.0 32.0 37.0 25.0 37.0 7 32.50458720437597 35.0 32.0 37.0 24.0 37.0 8 32.51114771702716 35.0 32.0 37.0 24.0 37.0 9 33.62290890196575 37.0 32.0 39.0 23.0 39.0 10 33.45757929041188 37.0 32.0 39.0 23.0 39.0 11 33.6220284941908 37.0 32.0 39.0 23.0 39.0 12 33.42289114869327 37.0 32.0 39.0 23.0 39.0 13 33.4483028286127 37.0 32.0 39.0 23.0 39.0 14 34.04485019404214 37.0 32.0 40.0 22.0 41.0 15 34.03741483329262 37.0 32.0 40.0 22.0 41.0 16 33.921002177885526 37.0 32.0 40.0 21.0 41.0 17 33.9581908548408 37.0 32.0 40.0 22.0 41.0 18 33.89146314480941 37.0 32.0 40.0 21.0 41.0 19 34.00141573867183 37.0 32.0 40.0 21.0 41.0 20 33.971090623859794 37.0 32.0 40.0 20.0 41.0 21 33.82894769079302 37.0 31.0 40.0 19.0 41.0 22 33.79263763120837 37.0 31.0 40.0 19.0 41.0 23 33.69201285548007 37.0 31.0 40.0 19.0 41.0 24 33.63638508694957 37.0 31.0 40.0 19.0 41.0 25 33.52870715468189 37.0 31.0 40.0 18.0 41.0 26 33.36751120981579 37.0 31.0 40.0 18.0 41.0 27 33.14500776847019 37.0 30.0 40.0 18.0 41.0 28 33.08600697239988 37.0 30.0 40.0 18.0 41.0 29 33.008536459417 37.0 30.0 39.0 18.0 41.0 30 32.86234419712993 36.0 30.0 39.0 17.0 41.0 31 32.74831296795516 36.0 30.0 39.0 17.0 41.0 32 32.56778847748538 36.0 30.0 39.0 17.0 41.0 33 32.445955231599164 36.0 30.0 39.0 16.0 40.0 34 32.31822580730274 36.0 30.0 39.0 16.0 40.0 35 32.21866632215518 35.0 29.0 39.0 16.0 40.0 36 32.10795261798576 35.0 29.0 39.0 16.0 40.0 37 31.985533815649415 35.0 29.0 39.0 16.0 40.0 38 31.876640481532075 35.0 28.0 39.0 15.0 40.0 39 31.77992481809492 35.0 28.0 39.0 15.0 40.0 40 31.58533773810493 35.0 28.0 39.0 15.0 40.0 41 31.445008484631924 35.0 27.0 39.0 15.0 40.0 42 31.366279317399865 35.0 27.0 39.0 14.0 40.0 43 31.169404006434902 35.0 27.0 39.0 13.0 40.0 44 30.98866447898103 35.0 26.0 39.0 13.0 40.0 45 30.819708073630473 35.0 26.0 39.0 12.0 40.0 46 30.548037773385317 34.0 26.0 38.0 12.0 40.0 47 30.37606934254845 34.0 25.0 38.0 10.0 40.0 48 30.232470339596357 34.0 25.0 38.0 10.0 40.0 49 30.054797020917952 34.0 24.0 38.0 10.0 40.0 50 28.860552473547248 33.0 23.0 38.0 9.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 1 3.0 2 33.0 3 74.0 4 81.0 5 126.0 6 205.0 7 297.0 8 514.0 9 1485.0 10 4659.0 11 14699.0 12 35449.0 13 62236.0 14 85167.0 15 99583.0 16 108187.0 17 112640.0 18 118290.0 19 124757.0 20 131247.0 21 140936.0 22 152299.0 23 166467.0 24 184450.0 25 205827.0 26 232167.0 27 264557.0 28 303399.0 29 351841.0 30 411261.0 31 485050.0 32 571378.0 33 668944.0 34 776194.0 35 880267.0 36 965504.0 37 995574.0 38 1023825.0 39 932456.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.10961343082195 24.082226474974817 14.046485505941714 21.76167458826151 2 14.965590980771548 25.41911755420695 37.12713667541758 22.48815478960392 3 17.359759074495972 31.190340967182955 30.463829088311368 20.98607087000971 4 12.846337613755903 20.86989889505371 35.736469560285975 30.547293930904413 5 12.193179488991767 41.56862800532448 33.20011779811758 13.038074707566171 6 28.30613884514505 39.285098948627244 18.497178255317657 13.91158395091005 7 24.25084708895723 34.96317084436342 23.26327325935742 17.522708807321933 8 27.31969708293745 33.680442686948346 20.210734911567506 18.78912531854669 9 27.137161976658238 15.00642161999749 20.419384989101577 37.437031414242696 10 16.521997615715055 30.03406404092473 31.654309030962246 21.78962931239797 11 31.991292639992658 25.311384056152463 22.969087628011508 19.728235675843372 12 22.463407674021823 28.07317862046139 29.439227410731988 20.024186294784794 13 28.010724108225084 23.118059443492488 26.822108741590274 22.049107706692155 14 23.016528867194552 22.42348606350354 28.0699669102174 26.490018159084517 15 24.74718817833165 28.548116953684705 25.549069857969194 21.155625010014447 16 22.088135999746573 29.36048923463562 26.184685999520298 22.36668876609751 17 21.39039882690595 28.728117942022212 27.31693473571029 22.564548495361546 18 21.102890031961692 27.32466951220972 30.86492638026921 20.707514075559377 19 22.287794419627282 26.947671513398436 32.11631401994634 18.648220047027944 20 23.976699809633914 25.640390415443765 31.010902921969514 19.372006852952804 21 22.789130621906402 27.19651536388628 28.95209850973749 21.062255504469825 22 22.701221409901635 27.0129966370663 28.87414553680366 21.411636416228404 23 21.473110688521462 27.218700135565744 29.109588234013188 22.198600941899603 24 22.64122839202868 28.107888170440564 28.67160634981449 20.579277087716267 25 22.98550611782804 26.09808529691563 29.076334244988967 21.840074340267364 26 22.555606267004926 26.328544385408186 28.597106040783256 22.51874330680363 27 22.51288353043379 26.10651767823533 29.57518405548509 21.805414735845794 28 20.77121473136706 27.205732057950378 29.995186012623094 22.027867198059468 29 22.12316829077919 26.698645652443126 30.35377059309276 20.82441546368493 30 21.627682350538073 28.027213910966132 29.472716100225483 20.872387638270315 31 23.582565023449767 26.01173699868069 29.1851843750439 21.220513602825644 32 21.096810238552358 27.68370929926919 30.0280800677904 21.19140039438806 33 22.67796257704146 27.02447670348103 28.893220804090312 21.404339915387194 34 20.872330894908806 27.664769890865102 29.730332633324135 21.732566580901956 35 22.142107149558683 27.986919836830648 29.03343279075179 20.837540222858884 36 22.46532510418538 27.27065126770737 28.22106658609174 22.042957042015516 37 23.227909259455064 27.013995415213778 28.60739050350286 21.1507048218283 38 22.919410952818666 27.301690005938873 28.637210663734486 21.14168837750798 39 23.129383117189075 26.19233980478225 29.51462248415434 21.16365459387433 40 22.295851014517122 26.661270964114088 29.226428926495224 21.816449094873565 41 21.687716633085984 27.366542710290766 29.241805402939896 21.70393525368335 42 23.133109011522293 26.922971441237948 28.50526862211727 21.438650925122488 43 22.777784217200665 26.19846533789018 28.55960067536667 22.46414976954248 44 22.606715973861068 26.59246776407561 29.22337116533717 21.57744509672615 45 24.448778737202883 26.11411910525923 27.859810174061145 21.577291983476744 46 22.61924800550401 27.02507433709221 29.271944168249224 21.08373348915456 47 23.163560678562863 27.34505989328953 27.366810998633017 22.12456842951459 48 24.373626663675296 26.95206296207966 27.865405263242238 20.808905111002808 49 23.620534280137424 27.062443064018304 29.209460238176753 20.10756241766752 50 24.276070781928375 27.32815598834551 26.51888011924405 21.87689311048207 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2879.0 1 2350.5 2 1822.0 3 2728.0 4 3634.0 5 4890.0 6 6146.0 7 5796.0 8 5446.0 9 7515.0 10 9584.0 11 15058.0 12 20532.0 13 42659.5 14 64787.0 15 89752.0 16 114717.0 17 117729.5 18 120742.0 19 119767.0 20 118792.0 21 134117.5 22 149443.0 23 160245.0 24 171047.0 25 185497.0 26 199947.0 27 198262.0 28 196577.0 29 222274.0 30 247971.0 31 317462.5 32 386954.0 33 401210.0 34 415466.0 35 439921.0 36 464376.0 37 466089.5 38 467803.0 39 511786.0 40 555769.0 41 603145.5 42 650522.0 43 656089.5 44 661657.0 45 703921.5 46 746186.0 47 776165.5 48 806145.0 49 831741.5 50 857338.0 51 837595.5 52 817853.0 53 685038.0 54 552223.0 55 496924.5 56 441626.0 57 407103.0 58 372580.0 59 344590.5 60 316601.0 61 268211.5 62 219822.0 63 187499.0 64 155176.0 65 127740.5 66 100305.0 67 82273.5 68 64242.0 69 53679.5 70 43117.0 71 35542.0 72 27967.0 73 23672.5 74 19378.0 75 16354.0 76 13330.0 77 10544.5 78 7759.0 79 6301.0 80 4843.0 81 4112.5 82 3382.0 83 2823.0 84 2264.0 85 1862.0 86 1460.0 87 1187.5 88 915.0 89 670.5 90 426.0 91 326.5 92 227.0 93 199.0 94 171.0 95 130.0 96 89.0 97 68.5 98 48.0 99 45.0 100 42.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03367844790413384 2 0.006275838361542568 3 4.8058221687488124E-4 4 0.004532549927780743 5 0.007095655084446777 6 0.022427170120827792 7 0.012975719855621794 8 0.01725384390388054 9 0.017687310217140238 10 0.017140765735204098 11 0.008245283132657277 12 0.010930889638722789 13 0.022502555566612088 14 0.029334361590813828 15 0.02316217821722467 16 0.05201595759116362 17 0.021079655277433516 18 0.032896323904121776 19 0.05341058833817308 20 0.03906850727771093 21 0.05031036188029394 22 0.05291115975985212 23 0.03760791426564022 24 0.04428894939827337 25 0.044166448048873895 26 0.04970727831401958 27 0.043280669060908425 28 0.052166728482732204 29 0.013286684819482012 30 0.030992841398068325 31 0.05502195224181239 32 0.050093628723664095 33 0.03807907330179206 34 0.012391482650793506 35 0.014671892385768433 36 0.016151331759285226 37 0.004805822168748813 38 0.006464301976003305 39 0.0036561941205383126 40 0.023086792771440375 41 0.008179320867596018 42 0.013936884289371556 43 0.003872927277168161 44 0.007821240000120617 45 0.0107801187471542 46 0.015812097253255896 47 0.01105339098812227 48 0.03616616761501558 49 0.004042544530182825 50 0.012099364048379363 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1.0612128E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.47064562501228 #Duplication Level Percentage of deduplicated Percentage of total 1 82.77059883860957 31.01467777251592 2 7.158660018025118 5.3647922537072645 3 3.3062022107917386 3.7165659421562824 4 1.8520023662018406 2.7758289744253357 5 1.1933459148995067 2.235772094262774 6 0.7936866055707866 1.7843969720797108 7 0.5465845511072251 1.4336613213051674 8 0.395583939127959 1.1858228478408144 9 0.28881125928883794 0.9739749914393026 >10 1.4537124862638076 9.641575237686284 >50 0.10141409952485785 2.648469299633816 >100 0.0989191864736533 8.029039855786946 >500 0.01888481511885925 5.0098342217301 >1k 0.019028845447657372 14.614127211165759 >5k 0.0017831908480496668 4.533765163181152 >10k+ 7.816727005149225E-4 5.037695841083676 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 48854 0.46036007104324417 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45057 0.424580253837873 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 33249 0.31331133586025345 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30113 0.2837602411128098 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26187 0.24676483359416695 No Hit GAATACACCTCTTAAATTTACAGGACTTAACATTTCAAACATCCCACGTG 21982 0.20714035865379687 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 19823 0.18679571147276022 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 18829 0.17742906983406156 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 18449 0.17384826115930754 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 18017 0.1697774470869556 No Hit ACTTTATTCCATTTGTAATTTTTGGCTACACAACACTAAAAGAAAATTTA 15600 0.14700161927937544 No Hit GGAATAACATTGCCAAACGTCACGATGAATTTGAGAGACATGCTGAAGGG 14799 0.1394536515202229 No Hit CAGTGATCCTGATCAGATGAACGAGGACAAGCGCCATTCACAGGGCACAT 14715 0.1386621043394878 No Hit GTGATATAGTTATTTCCTGTCAGTGATTTTGGTCTGAATCAACCAGTTTA 14565 0.13724862723103226 No Hit TCCCAGAAGAGGTCGCCATTGTTGAAGAACTTGGCCGCAGACATGCTGAT 13750 0.12956873494175722 No Hit ATCTTGAATAGTGATATAGTTATTTCCTGTCAGTGATTTTGGTCTGAATC 13681 0.12891853547186766 No Hit GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG 12950 0.1220301903633277 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 12680 0.11948593156810773 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 12533 0.11810072400182131 No Hit ATTGAAAGCTGAGTATTTTTAAGACAAAGGTTTCAGGAAGAAAGTTCTCT 12427 0.1171018668451794 No Hit GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT 12426 0.11709244366445637 No Hit GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA 11939 0.11250335465233739 No Hit ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA 11894 0.11207931151980075 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 11693 0.11018525219447034 No Hit GTACAAGGCAGCTGGCAACGTTCCCTTCAAGACACAGAGGAGAAATCCAG 10851 0.10225093402567327 No Hit GTTCTACAGCACACTACCAGAAGACAGCAGAAATGAAAAGCATTTACTTT 10774 0.10152534910999943 No Hit ATTCAAGATCATCTTCACAACATCACCTGCTAGCCACGTGGGATGTTTGA 10751 0.10130861595336958 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3192453012251642E-4 0.0 0.0 0.0 0.0 2 3.39234506029328E-4 0.0 0.0 1.8846361446073774E-5 0.0 3 4.617358554288075E-4 0.0 0.0 2.8269542169110662E-5 0.0 4 4.617358554288075E-4 0.0 0.0 4.711590361518444E-5 0.0 5 4.99428578320955E-4 0.0 0.0 5.6539084338221325E-5 0.0 6 5.182749397670288E-4 0.0 9.423180723036887E-6 5.6539084338221325E-5 0.0 7 6.219299277204346E-4 0.0 9.423180723036887E-6 7.53854457842951E-5 0.0 8 9.894339759188731E-4 0.0 9.423180723036887E-6 1.7904043373770086E-4 0.0 9 9.9885715664191E-4 0.0 9.423180723036887E-6 2.450026987989591E-4 0.0 10 0.009149908482068817 0.0 9.423180723036887E-6 0.0035336927711388326 0.0 11 0.009197024385684002 0.0 9.423180723036887E-6 0.0035619623133079435 0.0 12 0.009950878843526953 0.0 9.423180723036887E-6 0.003910620000060309 9.423180723036887E-6 13 0.00996030202424999 0.0 9.423180723036887E-6 0.0039200431807833456 9.423180723036887E-6 14 0.0099885715664191 0.0 9.423180723036887E-6 0.003976582265121566 9.423180723036887E-6 15 0.01005453383148036 0.0 9.423180723036887E-6 0.00399542862656764 9.423180723036887E-6 16 0.010073380192926433 0.0 9.423180723036887E-6 0.004004851807290677 9.423180723036887E-6 17 0.011515126843551077 0.0 9.423180723036887E-6 0.004777552626579702 9.423180723036887E-6 18 0.011637628192950555 0.0 9.423180723036887E-6 0.004890630795256145 9.423180723036887E-6 19 0.011797822265242184 0.0 9.423180723036887E-6 0.004984862602486513 9.423180723036887E-6 20 0.01195801633753381 0.0 9.423180723036887E-6 0.005163903036224215 9.423180723036887E-6 21 0.01259879262670032 0.0 9.423180723036887E-6 0.005531407084422653 9.423180723036887E-6 22 0.014285541976123922 0.0 9.423180723036887E-6 0.007133347807338924 9.423180723036887E-6 23 0.015510555470118717 9.423180723036887E-6 9.423180723036887E-6 0.009498566168821183 9.423180723036887E-6 24 0.016490566265314553 9.423180723036887E-6 9.423180723036887E-6 0.011175892337521748 9.423180723036887E-6 25 0.016509412626760627 9.423180723036887E-6 9.423180723036887E-6 0.011279547325475155 9.423180723036887E-6 26 0.016575374891821884 9.423180723036887E-6 9.423180723036887E-6 0.011486857301381966 9.423180723036887E-6 27 0.016575374891821884 9.423180723036887E-6 9.423180723036887E-6 0.01165647455439663 9.423180723036887E-6 28 0.016584798072544923 9.423180723036887E-6 9.423180723036887E-6 0.012400905831516543 9.423180723036887E-6 29 0.016603644433990997 2.8269542169110662E-5 9.423180723036887E-6 0.01353168751828097 9.423180723036887E-6 30 0.016603644433990997 2.8269542169110662E-5 9.423180723036887E-6 0.01570844226530249 9.423180723036887E-6 31 0.016782684867728697 2.8269542169110662E-5 9.423180723036887E-6 0.01774384930147846 9.423180723036887E-6 32 0.01682980077134388 2.8269542169110662E-5 9.423180723036887E-6 0.01992060404849998 9.423180723036887E-6 33 0.016961725301466397 2.8269542169110662E-5 9.423180723036887E-6 0.02261563373528853 9.423180723036887E-6 34 0.017131342554481063 2.8269542169110662E-5 9.423180723036887E-6 0.025687590650998557 9.423180723036887E-6 35 0.01715961209665017 2.8269542169110662E-5 9.423180723036887E-6 0.029532248385997606 9.423180723036887E-6 36 0.017216151180988393 2.8269542169110662E-5 9.423180723036887E-6 0.034140183759562646 9.423180723036887E-6 37 0.017234997542434467 2.8269542169110662E-5 9.423180723036887E-6 0.04116987657894816 9.423180723036887E-6 38 0.01725384390388054 4.711590361518444E-5 9.423180723036887E-6 0.0485105343621939 9.423180723036887E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTCA 2995 0.0 24.828762 10 CAATGCG 3215 0.0 23.817093 19 CGACGAG 3215 0.0 23.135422 24 GTACTAG 3560 0.0 22.555872 1 AGTCCTA 3310 0.0 22.001879 29 TGCGACG 3455 0.0 21.719717 22 AATGCGA 3555 0.0 21.663221 20 GACGAGT 3515 0.0 21.098242 25 TAGGCAT 4015 0.0 21.09282 5 CGTCATC 3660 0.0 20.737717 12 CAATTCG 3555 0.0 20.301437 15 AATTCGT 3510 0.0 19.809828 16 CCAATGC 3855 0.0 19.74831 18 GTCATCC 4035 0.0 19.031382 13 CTAGGCA 4635 0.0 18.983124 4 GCTCGTC 2850 0.0 18.907566 39 ATTCGTC 3655 0.0 18.902552 17 GTTAATA 4405 0.0 18.828348 1 TCGTCTC 3735 0.0 18.733849 19 GTCCTAC 3950 0.0 18.54842 30 >>END_MODULE