##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558177_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8462398 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.255145645477796 30.0 27.0 31.0 22.0 34.0 2 28.216861225387888 31.0 27.0 31.0 20.0 34.0 3 28.42831287301779 31.0 27.0 31.0 22.0 34.0 4 31.826487125753243 35.0 30.0 37.0 23.0 37.0 5 31.081110696991562 35.0 30.0 35.0 18.0 37.0 6 31.324901405015456 35.0 30.0 36.0 19.0 37.0 7 31.071699416642893 35.0 30.0 36.0 17.0 37.0 8 31.08340650014334 35.0 30.0 37.0 17.0 37.0 9 32.019736013361694 35.0 30.0 39.0 17.0 39.0 10 31.733027564999897 35.0 29.0 39.0 17.0 39.0 11 31.996111267751765 35.0 30.0 39.0 17.0 39.0 12 31.7154815928062 35.0 29.0 39.0 17.0 39.0 13 31.80671826118318 35.0 29.0 39.0 17.0 39.0 14 32.202294668721564 36.0 29.0 39.0 17.0 40.0 15 32.145528253339066 36.0 28.0 39.0 17.0 40.0 16 32.01680587464688 36.0 28.0 39.0 17.0 40.0 17 32.02054843083485 36.0 28.0 39.0 17.0 40.0 18 31.971061866860907 36.0 28.0 39.0 16.0 40.0 19 31.986347605016924 36.0 28.0 39.0 16.0 40.0 20 31.965906472373433 36.0 28.0 39.0 16.0 40.0 21 31.818623515462164 36.0 27.0 39.0 16.0 40.0 22 31.74192657920367 36.0 27.0 39.0 16.0 40.0 23 31.6000830970134 35.0 27.0 39.0 15.0 40.0 24 31.490938029622335 35.0 27.0 39.0 15.0 40.0 25 31.401164658055553 35.0 27.0 39.0 14.0 40.0 26 31.201002599972252 35.0 27.0 39.0 13.0 40.0 27 30.937235166674977 34.0 27.0 39.0 13.0 40.0 28 30.825621295524034 34.0 26.0 39.0 13.0 40.0 29 30.68696189897946 34.0 26.0 39.0 13.0 40.0 30 30.528277327537655 34.0 25.0 38.0 12.0 40.0 31 30.384424367655598 34.0 25.0 38.0 12.0 40.0 32 30.158541704136347 34.0 25.0 38.0 12.0 40.0 33 29.986058088971944 33.0 25.0 38.0 11.0 40.0 34 29.850060703833595 33.0 25.0 38.0 10.0 40.0 35 29.745861634019104 33.0 25.0 38.0 9.0 40.0 36 29.612836692389084 33.0 24.0 38.0 9.0 40.0 37 29.463121564360364 33.0 24.0 38.0 9.0 40.0 38 29.31017283753376 33.0 24.0 38.0 9.0 40.0 39 29.20225850875839 33.0 24.0 38.0 9.0 40.0 40 28.956224110470814 33.0 23.0 38.0 9.0 40.0 41 28.74905446423106 32.0 23.0 38.0 9.0 40.0 42 28.634773618541693 32.0 22.0 38.0 9.0 40.0 43 28.44534870612325 32.0 22.0 38.0 9.0 40.0 44 28.215332226160953 32.0 22.0 37.0 8.0 40.0 45 28.047522463490846 31.0 21.0 37.0 8.0 40.0 46 27.730552261900232 31.0 20.0 37.0 8.0 40.0 47 27.526412253358917 31.0 20.0 37.0 8.0 40.0 48 27.375243636614584 31.0 20.0 37.0 8.0 40.0 49 27.15390046651079 30.0 19.0 37.0 8.0 40.0 50 25.92489256591335 29.0 15.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 25.0 3 82.0 4 88.0 5 107.0 6 155.0 7 278.0 8 649.0 9 2295.0 10 8523.0 11 25889.0 12 55668.0 13 89520.0 14 113272.0 15 128553.0 16 136783.0 17 143313.0 18 150876.0 19 159006.0 20 167132.0 21 177756.0 22 190204.0 23 205292.0 24 222674.0 25 241051.0 26 265211.0 27 289761.0 28 316247.0 29 345752.0 30 378626.0 31 413878.0 32 451373.0 33 491585.0 34 531794.0 35 566792.0 36 594007.0 37 612934.0 38 632981.0 39 352266.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.122122747108136 25.695092193725916 13.07327116595107 21.109513893214878 2 17.517163546335222 26.21735469556457 32.9559352278871 23.3095465302131 3 19.349718122401065 30.54656968663946 27.505680743234663 22.598031447724814 4 14.687037309057727 22.032021330063518 32.26402547752335 31.016915883355413 5 14.14301109489579 40.557934411029116 31.563331713902176 13.735722780172916 6 31.42157265415898 37.539413273070146 16.657792265737978 14.3812218070329 7 28.051922910782285 32.378792747650394 21.566605561099088 18.00267878046823 8 30.322555101119423 31.540609393531643 18.686472754219785 19.45036275112915 9 29.11726071991742 12.861418934299456 19.305661039216755 38.715659306566366 10 18.956025058840243 28.69644013281573 28.520019865156154 23.827514943187875 11 35.31915828987613 23.781316279696938 20.346433306589528 20.553092123837406 12 24.84381379974201 26.36356169418433 26.958252846557983 21.83437165951568 13 31.25748167521445 20.84485724065417 23.829159196810846 24.068501887320533 14 25.61115807629352 20.14894976080853 25.85468751920766 28.385204643690294 15 27.06009460510271 26.666259290221795 22.699917724929417 23.57372837974608 16 24.727693443763744 26.362596825035013 24.824284980264352 24.08542475093689 17 23.921990643888623 26.764849103746936 25.742425639243667 23.570734613120774 18 25.221247777297474 23.914133793482847 28.61742731173179 22.24719111748789 19 25.117823646163036 25.003653171449365 29.268074686430207 20.610448495957392 20 26.466911513941316 23.851685865572627 27.980927304379982 21.700475316106075 21 26.195254095901227 24.727146808837137 27.00417256895899 22.073426526302647 22 26.006970035091353 24.25137382612082 26.417870604388916 23.323785534398915 23 23.91310027092775 24.74802442853561 27.305719957477148 24.033155343059494 24 23.836681857677373 26.518823258205803 26.512333090986466 23.132161793130354 25 25.1938886693359 24.14484176639449 26.650023459923133 24.011246104346476 26 25.541173854358057 24.592354375374107 26.71257387972895 23.15389789053889 27 25.27491519837563 24.042510634042127 27.069527283697635 23.613046883884607 28 24.458454582491083 24.266670670539074 28.03890960052151 23.235965146448333 29 24.811983867870175 24.10271380242573 28.300920358688746 22.78438197101535 30 25.168611788747143 24.311161534218932 27.949462208240554 22.57076446879337 31 26.555387577849626 23.734103022499173 27.01768818248661 22.692821217164592 32 24.05710132296294 25.13397863766336 28.211024304960326 22.597895734413378 33 24.86547789156336 25.125065369706473 26.85517572039072 23.154281018339454 34 23.98473781338508 24.998100204043403 27.88114545582398 23.136016526747532 35 24.995866456343457 25.345105098375974 27.57604863481965 22.08297981046092 36 25.612465606111872 23.82846861940708 26.665499767230745 23.8935660072503 37 25.96306053634794 24.874512630396076 26.643301051393596 22.519125781862385 38 25.521141394580084 23.971009207314847 27.393685004678048 23.11416439342702 39 26.33590199345815 23.325406644119937 27.350091212270577 22.98860015015134 40 25.341519308979727 24.481183417489603 27.359461431386645 22.817835842144024 41 24.815729432544742 24.37579637857075 26.81511679273606 23.99335739614845 42 26.37818800671284 24.757451485569764 26.6489351643936 22.2154253433238 43 26.291852992801186 23.407659739811294 26.398717857966275 23.901769409421245 44 25.917026619789052 24.93383756315183 26.459243064377937 22.68989275268118 45 27.703850512972334 23.834912846113028 25.43079394006006 23.030442700854582 46 25.540118431955523 24.22377051766912 27.024695838973383 23.211415211401977 47 26.252249767208408 25.080237609926737 25.699754568701206 22.96775805416365 48 27.412264266698 24.56627720290612 25.23786400077734 22.783594529618544 49 26.428587213333323 25.034846761109513 26.572772150102182 21.963793875454986 50 27.674582825388516 24.824942961465528 24.02077201309242 23.479702200053538 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2369.0 1 1811.5 2 1254.0 3 1767.5 4 2281.0 5 3117.0 6 3953.0 7 3582.0 8 3211.0 9 4627.5 10 6044.0 11 10061.5 12 14079.0 13 29081.0 14 44083.0 15 55893.5 16 67704.0 17 71091.5 18 74479.0 19 68911.5 20 63344.0 21 61054.0 22 58764.0 23 57227.5 24 55691.0 25 59399.5 26 63108.0 27 66902.0 28 70696.0 29 87100.0 30 103504.0 31 117114.0 32 130724.0 33 150367.5 34 170011.0 35 198750.5 36 227490.0 37 246866.5 38 266243.0 39 307881.0 40 349519.0 41 383254.5 42 416990.0 43 453102.5 44 489215.0 45 564840.5 46 640466.0 47 697045.0 48 753624.0 49 779228.0 50 804832.0 51 731669.5 52 658507.0 53 598682.5 54 538858.0 55 517981.5 56 497105.0 57 471318.0 58 445531.0 59 417238.0 60 388945.0 61 348327.5 62 307710.0 63 271822.5 64 235935.0 65 198909.5 66 161884.0 67 137822.0 68 113760.0 69 98088.0 70 82416.0 71 67286.5 72 52157.0 73 43097.0 74 34037.0 75 28298.0 76 22559.0 77 17497.5 78 12436.0 79 10126.0 80 7816.0 81 7081.0 82 6346.0 83 5516.0 84 4686.0 85 4052.5 86 3419.0 87 2895.0 88 2371.0 89 1660.5 90 950.0 91 746.5 92 543.0 93 450.0 94 357.0 95 281.5 96 206.0 97 157.5 98 109.0 99 93.0 100 77.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.030121485659265847 2 0.004998583143926816 3 4.3722831282574985E-4 4 0.004147760481130762 5 0.006842032246651599 6 0.020478828814243906 7 0.012821424849079421 8 0.016106545685986406 9 0.01621289851883591 10 0.015976558890281455 11 0.007385613392326856 12 0.010198054972124924 13 0.020396109944249848 14 0.026351868583822224 15 0.020738802405653813 16 0.04844962385366417 17 0.019119875950055765 18 0.03000331584498862 19 0.04719702382232554 20 0.035155519747475834 21 0.045140869053901744 22 0.04613349549383047 23 0.034824644267499594 24 0.040744951962788795 25 0.038889685878636296 26 0.04593260680955918 27 0.038334287751533316 28 0.04632256719667404 29 0.012088772000560598 30 0.028738898832222262 31 0.050399425789238464 32 0.04679524645378296 33 0.033347521589034215 34 0.01137975311489722 35 0.01341227392046557 36 0.01452307017467153 37 0.004620439738239681 38 0.0063693529895426804 39 0.003178768004057479 40 0.020667900517087473 41 0.0077519398165862684 42 0.011793347464867524 43 0.0036514472611663975 44 0.007657403965164484 45 0.010966158764926915 46 0.01579930416886561 47 0.011427021040608111 48 0.03228399326053915 49 0.004124126518275316 50 0.011970602186283368 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 8462398.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.64888151675178 #Duplication Level Percentage of deduplicated Percentage of total 1 89.0595525316986 41.545285139861384 2 4.795845209388337 4.474416298908763 3 1.911291756453357 2.674788680722112 4 1.0950573436610316 2.043328011139696 5 0.6699540516387495 1.5626303588281918 6 0.45032276139205624 1.2604231884284707 7 0.305576987501114 0.9978377278929785 8 0.23594734318151492 0.8805343725013489 9 0.17531131288487076 0.7360268996981282 >10 1.0434758620721847 9.153747393234122 >50 0.11265290895238764 3.695766726222528 >100 0.11670271228056583 11.479336191732123 >500 0.01682252162076842 5.4023599232126855 >1k 0.010525467384840894 8.931862561314366 >5k 6.247994283978068E-4 1.9493423289316505 >10k+ 3.3643046144497287E-4 3.2123141973715756 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 54945 0.6492840445462386 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27100 0.3202401966912925 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 22996 0.2717433049119174 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 22905 0.27066795960199463 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 21604 0.25529406676452704 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20646 0.24397339855676842 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 20006 0.2364105304430257 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 19365 0.2288358453478553 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18062 0.21343831854753226 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 13645 0.1612427115812799 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 12981 0.15339623591327187 No Hit GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG 11973 0.14148471863412712 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 10283 0.1215140200212753 No Hit GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT 10045 0.11870157844147723 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 9912 0.11712991991159007 No Hit GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC 9713 0.1147783406074732 No Hit ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA 9081 0.10731000834515228 No Hit GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA 8936 0.10559654603813245 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.4815660998218236E-4 0.0 0.0 1.181698142772297E-5 0.0 2 4.4904529425347285E-4 0.0 0.0 9.453585142178376E-5 0.0 3 5.435811456752566E-4 0.0 0.0 1.0635283284950673E-4 0.0 4 5.435811456752566E-4 1.181698142772297E-5 0.0 1.0635283284950673E-4 0.0 5 5.908490713861485E-4 1.181698142772297E-5 0.0 1.2998679570495265E-4 0.0 6 6.263000156693174E-4 1.181698142772297E-5 0.0 1.4180377713267562E-4 0.0 7 6.735679413802093E-4 1.181698142772297E-5 0.0 1.8907170284356752E-4 0.0 8 0.001110796254205959 1.181698142772297E-5 0.0 4.608622756811958E-4 0.0 9 0.001110796254205959 1.181698142772297E-5 0.0 4.608622756811958E-4 0.0 10 0.005743052973873363 1.181698142772297E-5 0.0 0.00855549455367143 0.0 11 0.005766686936728809 1.181698142772297E-5 0.0 0.008567311535099154 0.0 12 0.006463888840964464 1.181698142772297E-5 0.0 0.009063624755063518 0.0 13 0.006499339785247633 2.363396285544594E-5 0.0 0.009063624755063518 0.0 14 0.006499339785247633 2.363396285544594E-5 0.0 0.009087258717918963 0.0 15 0.006593875636669417 2.363396285544594E-5 0.0 0.009205428532196193 1.181698142772297E-5 16 0.006617509599524863 2.363396285544594E-5 0.0 0.009217245513623917 2.363396285544594E-5 17 0.00808281529656251 2.363396285544594E-5 0.0 0.010339858749257597 2.363396285544594E-5 18 0.008260070017978356 2.363396285544594E-5 0.0 0.010564381396384335 2.363396285544594E-5 19 0.008342788887972416 2.363396285544594E-5 0.0 0.010765270080655625 2.363396285544594E-5 20 0.008567311535099154 2.363396285544594E-5 0.0 0.010966158764926915 2.363396285544594E-5 21 0.009039990792208071 2.363396285544594E-5 0.0 0.011651543687734849 2.363396285544594E-5 22 0.010363492712113044 2.363396285544594E-5 0.0 0.01396767204756855 2.363396285544594E-5 23 0.011214315374909098 2.363396285544594E-5 0.0 0.017879092900144854 2.363396285544594E-5 24 0.01201787011199426 2.363396285544594E-5 0.0 0.020065234464273603 2.363396285544594E-5 25 0.01201787011199426 2.363396285544594E-5 0.0 0.020124319371412215 2.363396285544594E-5 26 0.012076955019132874 2.363396285544594E-5 0.0 0.020396109944249844 2.363396285544594E-5 27 0.012088772000560598 3.5450944283168905E-5 0.0 0.020561547684237968 2.363396285544594E-5 28 0.012112405963416043 3.5450944283168905E-5 0.0 0.021057860904202332 2.363396285544594E-5 29 0.012112405963416043 3.5450944283168905E-5 0.0 0.021967768474137 2.363396285544594E-5 30 0.012112405963416043 3.5450944283168905E-5 0.0 0.023102198691198405 2.363396285544594E-5 31 0.012443281443392287 3.5450944283168905E-5 0.0 0.024602955332519223 2.363396285544594E-5 32 0.012514183331958624 3.5450944283168905E-5 0.0 0.0260328100852737 2.363396285544594E-5 33 0.0126559871090913 3.5450944283168905E-5 0.0 0.027958978057992544 2.363396285544594E-5 34 0.01277415692336853 3.5450944283168905E-5 0.0 0.03015693660354902 3.5450944283168905E-5 35 0.012880509756218036 4.726792571089188E-5 0.0 0.032780306480503514 3.5450944283168905E-5 36 0.012951411644784375 4.726792571089188E-5 0.0 0.03564001598601248 3.5450944283168905E-5 37 0.01297504560763982 4.726792571089188E-5 0.0 0.03979959344857096 3.5450944283168905E-5 38 0.01297504560763982 4.726792571089188E-5 0.0 0.044691823759648266 3.5450944283168905E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAATTCG 2700 0.0 23.795748 15 AATTCGT 2660 0.0 23.078114 16 GCATATA 820 0.0 22.53691 1 CAATGCG 2855 0.0 21.80883 19 AATGCGA 3000 0.0 21.415033 20 TCGTCTC 2805 0.0 21.413212 19 ATCGTCA 3030 0.0 21.346968 10 ATTCGTC 2925 0.0 21.28691 17 GTACTAG 3045 0.0 21.097183 1 TAGGCAT 3230 0.0 21.04388 5 GTGATCG 3285 0.0 20.959152 8 GTTAATA 3230 0.0 20.638067 1 TGCGACG 3055 0.0 20.384697 22 TGATCGC 3415 0.0 20.356337 9 GGCAATT 3255 0.0 20.346544 13 CGACGAG 3175 0.0 19.891603 24 AGTCCTA 3140 0.0 19.339 29 GGTATAG 2470 0.0 19.328215 1 CGTCTCC 3260 0.0 19.302147 20 TTAATAA 3395 0.0 19.241905 2 >>END_MODULE