##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558176_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13874440 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.553497438455175 31.0 30.0 34.0 26.0 34.0 2 30.678904590023095 31.0 30.0 34.0 26.0 34.0 3 30.89755961321682 31.0 30.0 34.0 27.0 34.0 4 34.53367126889446 35.0 35.0 37.0 30.0 37.0 5 34.131829464828854 35.0 35.0 37.0 30.0 37.0 6 34.17628488068708 36.0 35.0 37.0 30.0 37.0 7 34.03618423518355 36.0 35.0 37.0 29.0 37.0 8 34.02176772540009 36.0 35.0 37.0 29.0 37.0 9 35.42900938704553 38.0 35.0 39.0 28.0 39.0 10 35.33105948780636 38.0 35.0 39.0 28.0 39.0 11 35.41889762757992 38.0 35.0 39.0 28.0 39.0 12 35.27039426456131 38.0 35.0 39.0 27.0 39.0 13 35.30538342448416 38.0 35.0 39.0 27.0 39.0 14 36.21237347237078 39.0 36.0 40.0 27.0 41.0 15 36.19660433141806 39.0 36.0 40.0 27.0 41.0 16 36.17091608742407 39.0 36.0 40.0 27.0 41.0 17 36.127699712564976 39.0 35.0 40.0 27.0 41.0 18 36.10828912734496 39.0 35.0 40.0 27.0 41.0 19 36.15398689965144 39.0 35.0 40.0 27.0 41.0 20 36.12099219860405 39.0 35.0 40.0 27.0 41.0 21 36.05101005878436 39.0 35.0 40.0 27.0 41.0 22 35.993794127907144 39.0 35.0 40.0 27.0 41.0 23 35.75824141370751 39.0 34.0 40.0 27.0 41.0 24 35.72199115784132 39.0 34.0 40.0 27.0 41.0 25 35.708932756925684 39.0 34.0 40.0 27.0 41.0 26 35.639846437045385 39.0 34.0 40.0 26.0 41.0 27 35.43933347940529 38.0 34.0 40.0 25.0 41.0 28 35.43249803235302 38.0 34.0 40.0 25.0 41.0 29 35.40495659644642 38.0 34.0 40.0 25.0 41.0 30 35.309364702287084 38.0 34.0 40.0 25.0 41.0 31 35.208072902401824 38.0 34.0 40.0 25.0 41.0 32 35.07604155555107 38.0 34.0 40.0 25.0 41.0 33 34.94350762985749 38.0 33.0 40.0 25.0 41.0 34 34.828547530567 38.0 33.0 40.0 24.0 41.0 35 34.74937229899009 38.0 33.0 40.0 24.0 41.0 36 34.59853875183431 38.0 33.0 40.0 24.0 41.0 37 34.5448140609639 38.0 33.0 40.0 24.0 41.0 38 34.46555111413506 38.0 33.0 40.0 23.0 41.0 39 34.3923250956435 38.0 33.0 40.0 23.0 41.0 40 34.26861473327933 38.0 32.0 40.0 23.0 41.0 41 34.14404401186643 38.0 32.0 40.0 22.0 41.0 42 34.063286950680535 38.0 32.0 40.0 22.0 41.0 43 33.96402730488582 38.0 32.0 40.0 22.0 41.0 44 33.78466439005827 37.0 31.0 40.0 21.0 41.0 45 33.65632681391105 37.0 31.0 40.0 20.0 41.0 46 33.45305403317179 37.0 31.0 40.0 20.0 41.0 47 33.30121374268079 37.0 31.0 40.0 19.0 41.0 48 33.15536627063867 37.0 30.0 40.0 18.0 41.0 49 33.05812912088704 37.0 30.0 40.0 18.0 41.0 50 31.76937209718014 35.0 28.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 3.0 4 31.0 5 105.0 6 186.0 7 336.0 8 715.0 9 1891.0 10 4894.0 11 11869.0 12 24718.0 13 42067.0 14 59105.0 15 71956.0 16 81561.0 17 88557.0 18 93745.0 19 99222.0 20 104327.0 21 110589.0 22 118072.0 23 128151.0 24 141332.0 25 157530.0 26 179148.0 27 203839.0 28 234995.0 29 274943.0 30 327840.0 31 400459.0 32 498558.0 33 632743.0 34 818800.0 35 1067380.0 36 1398705.0 37 1845253.0 38 2287513.0 39 2363302.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.21637775035808 19.965012485960866 13.474266922096719 24.344342841584336 2 15.430590480987252 21.80243312846443 37.43815678961564 25.328819600932682 3 17.539850518928183 27.690895712978815 29.166706310317814 25.602547457775188 4 12.854010714036262 18.256252719721612 36.377727623534376 32.51200894270775 5 13.60650424368148 38.373493567687035 33.754738610645774 14.265263577985712 6 30.997199292346554 37.20507169900994 17.89147218189156 13.906256826751942 7 27.412807795975752 31.88379510404268 22.789119643079978 17.91427745690159 8 27.77006667611609 32.711130099678925 20.20329142758927 19.315511796615713 9 27.751078065370816 14.437172593695227 19.765514654018443 38.04623468691551 10 16.987804943094204 27.66633256407569 31.581545946938665 23.76431654589144 11 33.63756887950811 23.656033330286917 22.823972620314443 19.88242516989053 12 23.762314709379886 25.369395322582218 29.376866964191418 21.49142300384648 13 29.16261634333037 21.3071394724486 25.346112532938985 24.184131651282044 14 23.53888829939991 20.3931460565302 26.868676048768165 29.19928959530172 15 25.03433546619036 27.125097578749564 23.935427555301832 23.905139399758244 16 23.486007185457474 26.98887986195641 25.528282782631585 23.99683016995453 17 22.745377526010312 26.977129146415358 26.68486587317915 23.592627454395178 18 23.557460261205584 25.887152918833007 28.180302084694826 22.37508473526659 19 23.787092638453615 26.14965407502846 28.419664144801725 21.6435891417162 20 24.461973645734865 25.38824295478756 27.914619425009384 22.23516397446819 21 24.60607790848316 25.6986177527181 27.113141262024282 22.582163076774453 22 24.497908171516166 25.28718436288363 26.84828891984476 23.366618545755443 23 23.531484324616997 25.634947728296005 27.287354324685488 23.54621362240151 24 23.502924044917506 26.594027371650412 26.76710648836143 23.13594209507065 25 23.921849865729435 25.165425388893603 26.988863146556774 23.92386159882019 26 23.877356062370268 25.46238771686084 27.139899077654256 23.520357143114634 27 24.07509398824881 25.29559840476825 26.941010094747075 23.688297512235863 28 23.447614000364123 25.253017086760508 27.869002103623746 23.43036680925162 29 23.59519704885332 24.981347381140598 28.174958285240653 23.248497284765428 30 23.8112335013877 25.772635874062445 27.57969127433958 22.836439350210274 31 24.5032501427525 24.962754575289686 27.129081423718254 23.40491385823956 32 23.096323377627463 25.639956874638454 27.7396973596351 23.52402238809898 33 23.760401488649254 25.77725205704975 27.055451225990335 23.406895228310663 34 23.164222586835486 25.771691193484365 27.58279810294098 23.481288116739165 35 23.82169300216296 26.118260826440036 27.498738886232182 22.56130728516482 36 24.05771990668405 25.58643428362752 26.650053872998992 23.70579193668944 37 24.21161421501574 25.77277654041908 26.90305019271344 23.11255905185174 38 24.198397356974013 25.57881069597416 26.905809328673016 23.316982618378812 39 24.087128035594787 25.2215409766995 27.22190203474376 23.46942895296195 40 24.02803257010017 25.37390793335344 27.38549772402613 23.21256177252026 41 23.292599038140008 25.556435047203134 27.2960985194674 23.854867395189462 42 24.310523281287644 26.011001120094647 26.741182011992176 22.937293586625533 43 24.501175876818767 24.9007440600507 26.738740403721433 23.859339659409102 44 23.971461992486688 25.81019286241228 27.19973144498862 23.018613700112418 45 24.907849416011985 25.14675753648033 26.48181282106365 23.46358022644404 46 23.839152142980357 25.33804140743677 27.415319074887083 23.407487374695787 47 24.24291002802096 25.89727406523635 26.62241391415065 23.23740199259204 48 24.868420047128424 25.99402467040309 25.95001208994225 23.18754319252624 49 24.371447674916467 25.8050927723943 26.947848343019558 22.875611209669678 50 24.62108026966195 25.958714546499746 25.673778240709872 23.746426943128434 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2150.0 1 1947.5 2 1745.0 3 3239.5 4 4734.0 5 5619.5 6 6505.0 7 5433.5 8 4362.0 9 6365.5 10 8369.0 11 13418.5 12 18468.0 13 37394.0 14 56320.0 15 73689.5 16 91059.0 17 91290.0 18 91521.0 19 87210.5 20 82900.0 21 89379.0 22 95858.0 23 108875.0 24 121892.0 25 145780.0 26 169668.0 27 193159.0 28 216650.0 29 250656.0 30 284662.0 31 323345.0 32 362028.0 33 399745.5 34 437463.0 35 485284.5 36 533106.0 37 565729.5 38 598353.0 39 639776.5 40 681200.0 41 716362.5 42 751525.0 43 780224.0 44 808923.0 45 872036.5 46 935150.0 47 991443.5 48 1047737.0 49 1061304.0 50 1074871.0 51 986553.5 52 898236.0 53 839404.5 54 780573.0 55 750352.5 56 720132.0 57 692436.5 58 664741.0 59 633543.5 60 602346.0 61 532589.5 62 462833.0 63 410225.0 64 357617.0 65 309874.5 66 262132.0 67 225932.5 68 189733.0 69 166894.5 70 144056.0 71 120697.0 72 97338.0 73 85677.5 74 74017.0 75 63862.0 76 53707.0 77 42781.0 78 31855.0 79 24959.5 80 18064.0 81 14623.0 82 11182.0 83 9220.5 84 7259.0 85 5945.0 86 4631.0 87 3735.0 88 2839.0 89 2140.5 90 1442.0 91 1221.5 92 1001.0 93 796.5 94 592.0 95 522.0 96 452.0 97 362.0 98 272.0 99 221.5 100 171.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04370626850525138 2 2.810924260726919E-4 3 0.006083128400137231 4 0.008915675155177435 5 0.019878279772012418 6 0.03152559670876807 7 0.02070714205402164 8 0.029593987216781362 9 0.02375591375219468 10 0.0033010341318280238 11 0.0015279895981387358 12 0.023964931197223097 13 0.007654362986902535 14 0.01285817661829955 15 0.007423723047560838 16 0.008223755337152347 17 0.01206535182681247 18 0.023763121250299113 19 0.023236973888675867 20 0.026984872902978428 21 0.025586618270719393 22 0.03255626893770127 23 0.029730929680765496 24 0.04063587431276506 25 0.04181069650378682 26 0.03149676671635035 27 0.03138865424478393 28 0.039749352045920415 29 0.007589495503962682 30 0.008303037816301054 31 0.030848091886951833 32 0.03680869281931379 33 0.016339398202738272 34 0.011517581970875941 35 0.012843761622090695 36 0.01440778871075157 37 0.009016580128639427 38 0.013377116481818366 39 0.029507497239528228 40 0.018566515117006525 41 0.011005849605461554 42 0.01728358045441834 43 0.006940820674564163 44 0.03355811117421676 45 0.018595345109424236 46 0.015142953517403225 47 0.00903820262295271 48 0.024548738543681763 49 0.008158887854212494 50 0.010919359628208418 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1.387444E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.661411623476866 #Duplication Level Percentage of deduplicated Percentage of total 1 70.67441841247287 25.203495262570275 2 11.506057719570912 8.206445210022036 3 5.815662008914321 6.221841502887299 4 3.374451346191073 4.8135079383966195 5 2.1403504923170225 3.816395996251435 6 1.4270730691775217 3.0534864082030846 7 0.9593594195432135 2.3948477808633255 8 0.7108318772954764 2.0279414537058225 9 0.5389514443817465 1.7297792372848373 >10 2.5471971808619007 15.670720854558079 >50 0.15494453723813217 3.830927624719664 >100 0.1238169460628687 8.918414001196554 >500 0.016277739054432718 4.026102487068566 >1k 0.009825768345049857 6.213368903547909 >5k 4.210976935161632E-4 0.9908032794141245 >10k+ 3.6094088015671137E-4 2.8819220593103436 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 57359 0.41341488377188557 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44748 0.3225211251769441 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 44408 0.32007057582143855 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 27840 0.20065674722727547 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27175 0.19586376098783084 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22997 0.1657508339075307 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 22863 0.16478502916153734 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 21824 0.15729643863103662 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 21747 0.15674146127699567 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 19886 0.14332830730465518 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1531996967084798E-4 0.0 0.0 0.0 0.0 2 2.1622494313283997E-4 0.0 0.0 7.207498104427999E-6 0.0 3 3.171299165948319E-4 7.207498104427999E-6 0.0 4.324498862656799E-5 0.0 4 3.171299165948319E-4 7.207498104427999E-6 0.0 8.648997725313598E-5 0.0 5 4.1803489005682394E-4 2.8829992417711996E-5 0.0 8.648997725313598E-5 0.0 6 4.2524238816125194E-4 2.8829992417711996E-5 0.0 8.648997725313598E-5 0.0 7 4.756948748922479E-4 2.8829992417711996E-5 0.0 8.648997725313598E-5 0.0 8 6.847123199206598E-4 2.8829992417711996E-5 0.0 1.0090497346199199E-4 0.0 9 7.063348142339438E-4 2.8829992417711996E-5 0.0 2.0180994692398397E-4 0.0 10 0.006486748293985199 2.8829992417711996E-5 0.0 3.387524109081159E-4 0.0 11 0.00662369075796933 2.8829992417711996E-5 0.0 3.459599090125439E-4 0.0 12 0.007164253115801431 2.8829992417711996E-5 0.0 3.531674071169719E-4 0.0 13 0.007207498104427999 2.8829992417711996E-5 0.0 3.675824033258279E-4 0.0 14 0.007221913100636855 2.8829992417711996E-5 0.0 3.747899014302559E-4 0.0 15 0.00730840307788999 2.8829992417711996E-5 0.0 4.2524238816125194E-4 0.0 16 0.007315610575994418 2.8829992417711996E-5 0.0 4.4686488247453593E-4 3.603749052213999E-5 17 0.00817330285042135 2.8829992417711996E-5 0.0 5.045248673099599E-4 3.603749052213999E-5 18 0.008288622820092198 2.8829992417711996E-5 0.0 5.261473616232439E-4 3.603749052213999E-5 19 0.008360697801136479 2.8829992417711996E-5 0.0 5.477698559365279E-4 4.324498862656799E-5 20 0.008432772782180758 2.8829992417711996E-5 0.0 6.342598331896638E-4 5.765998483542399E-5 21 0.008793147687402159 2.8829992417711996E-5 0.0 6.991273161295158E-4 7.207498104427998E-5 22 0.00990310239548407 2.8829992417711996E-5 0.0 9.153522592623559E-4 7.207498104427998E-5 23 0.01080403965853757 6.486748293985198E-5 0.0 0.0013045571569014678 7.928247914870798E-5 24 0.011503166974667085 6.486748293985198E-5 0.0 0.0016649320621228677 7.928247914870798E-5 25 0.011546411963293654 6.486748293985198E-5 0.0 0.0017225920469582916 7.928247914870798E-5 26 0.011575241955711366 6.486748293985198E-5 0.0 0.0019532319862999876 8.648997725313598E-5 27 0.011589656951920222 6.486748293985198E-5 0.0 0.0020973819483885475 1.0811247156641998E-4 28 0.011632901940546789 6.486748293985198E-5 0.0 0.0025514543289675115 1.1531996967084798E-4 29 0.01166893943106893 6.486748293985198E-5 0.0 0.0035821265579007154 1.1531996967084798E-4 30 0.011733806914008781 6.486748293985198E-5 0.0 0.004778571243235763 1.1531996967084798E-4 31 0.012058144328708041 6.486748293985198E-5 0.0 0.006126373388763799 1.2252746777527597E-4 32 0.012151841804065606 6.486748293985198E-5 0.0 0.007582288005858254 1.2252746777527597E-4 33 0.012223916785109885 6.486748293985198E-5 0.0 0.009477860007322819 1.2252746777527597E-4 34 0.012476179218764866 6.486748293985198E-5 0.0 0.011604071948129078 1.4414996208855996E-4 35 0.012584291690331286 6.486748293985198E-5 0.0 0.014487071189900277 1.4414996208855996E-4 36 0.012613121682748998 7.207498104427998E-5 0.0 0.0172475429638962 1.5135746019298796E-4 37 0.012634744177062281 7.207498104427998E-5 0.0 0.021377439377733443 1.5135746019298796E-4 38 0.01264195167516671 9.369747535756397E-5 0.0 0.025918163183523083 1.6577245640184396E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACTAG 2460 0.0 19.144297 1 TGCGACG 2100 0.0 18.861914 22 CATTGCG 3015 0.0 18.532736 29 AGGTCGT 2945 0.0 18.306837 22 GCTCGTC 3055 0.0 18.291729 39 AATGCGA 2240 0.0 18.269514 20 CAATGCG 2240 0.0 18.268787 19 CGACGAA 2615 0.0 17.91996 38 CGTCATT 3190 0.0 17.797155 26 CGACGAG 2365 0.0 17.679274 24 GTCAGCG 3040 0.0 17.657713 43 GTCGTCA 3105 0.0 17.434738 24 TAGGTCG 3190 0.0 16.898754 21 TCGACGA 2740 0.0 16.860533 37 GTCGACG 2780 0.0 16.53892 36 TCAGCGC 3305 0.0 16.242535 44 TCGTCAG 3430 0.0 16.03349 41 CGAACAA 2995 0.0 16.011862 41 CAATTCG 2950 0.0 15.8088665 15 CCGTCGG 4205 0.0 15.647579 24 >>END_MODULE