##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558175_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15143528 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.630604440391963 31.0 30.0 34.0 26.0 34.0 2 30.752298011401304 31.0 30.0 34.0 27.0 34.0 3 30.972274558478052 31.0 31.0 34.0 27.0 34.0 4 34.61599047461067 37.0 35.0 37.0 31.0 37.0 5 34.22839288176441 35.0 35.0 37.0 30.0 37.0 6 34.25929690888411 37.0 35.0 37.0 30.0 37.0 7 34.12471908791663 36.0 35.0 37.0 29.0 37.0 8 34.109312044062655 36.0 35.0 37.0 29.0 37.0 9 35.52036143757254 38.0 35.0 39.0 29.0 39.0 10 35.42966381413895 38.0 35.0 39.0 28.0 39.0 11 35.51029073278037 38.0 35.0 39.0 29.0 39.0 12 35.37193955067802 38.0 35.0 39.0 28.0 39.0 13 35.40077701840681 38.0 35.0 39.0 28.0 39.0 14 36.30877441505044 39.0 36.0 40.0 28.0 41.0 15 36.27876370684559 39.0 36.0 40.0 27.0 41.0 16 36.26223393914549 39.0 36.0 40.0 27.0 41.0 17 36.223879336439964 39.0 36.0 40.0 27.0 41.0 18 36.20803917026468 39.0 36.0 40.0 27.0 41.0 19 36.24838888269629 39.0 35.0 41.0 27.0 41.0 20 36.21567886954744 39.0 35.0 41.0 27.0 41.0 21 36.150498351507 39.0 35.0 40.0 27.0 41.0 22 36.097498152346006 39.0 35.0 40.0 27.0 41.0 23 35.84085775784877 39.0 34.0 40.0 27.0 41.0 24 35.8119510856387 39.0 34.0 40.0 27.0 41.0 25 35.804006371566786 39.0 34.0 40.0 27.0 41.0 26 35.73067200720995 39.0 34.0 40.0 27.0 41.0 27 35.52911494600202 39.0 34.0 40.0 25.0 41.0 28 35.50312536154059 38.0 34.0 40.0 25.0 41.0 29 35.462891011922714 38.0 34.0 40.0 25.0 41.0 30 35.35376663879117 38.0 34.0 40.0 25.0 41.0 31 35.26011514621956 38.0 34.0 40.0 25.0 41.0 32 35.119984127872975 38.0 34.0 40.0 25.0 41.0 33 34.98052336285178 38.0 33.0 40.0 25.0 41.0 34 34.8845856130751 38.0 33.0 40.0 24.0 41.0 35 34.795413525830966 38.0 33.0 40.0 24.0 41.0 36 34.62426437221234 38.0 33.0 40.0 24.0 41.0 37 34.58537138769777 38.0 33.0 40.0 24.0 41.0 38 34.491174975870884 38.0 33.0 40.0 23.0 41.0 39 34.43045827894266 38.0 33.0 40.0 23.0 41.0 40 34.28860144082673 38.0 33.0 40.0 23.0 41.0 41 34.14996300729922 38.0 32.0 40.0 22.0 41.0 42 34.06414502617884 38.0 32.0 40.0 22.0 41.0 43 33.96633175571769 37.0 32.0 40.0 22.0 41.0 44 33.774897500767324 37.0 31.0 40.0 21.0 41.0 45 33.67585208677925 37.0 31.0 40.0 20.0 41.0 46 33.44666170260985 37.0 31.0 40.0 20.0 41.0 47 33.30630326037631 37.0 31.0 40.0 19.0 41.0 48 33.17123031040059 37.0 30.0 40.0 19.0 41.0 49 33.0699237324354 37.0 30.0 40.0 18.0 41.0 50 31.820040548014966 35.0 28.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 4.0 4 30.0 5 94.0 6 172.0 7 322.0 8 655.0 9 1995.0 10 5449.0 11 12981.0 12 26551.0 13 44403.0 14 62377.0 15 75935.0 16 86021.0 17 93946.0 18 100124.0 19 104772.0 20 111164.0 21 116581.0 22 125243.0 23 136257.0 24 150779.0 25 169090.0 26 192075.0 27 219356.0 28 253338.0 29 295366.0 30 353312.0 31 431305.0 32 539240.0 33 685275.0 34 893171.0 35 1169236.0 36 1543709.0 37 2037253.0 38 2520660.0 39 2585287.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.163643942892286 20.18114541775423 13.86178644263299 23.79342419672049 2 15.230430206955747 22.600711500970153 37.18182591992236 24.987032372151734 3 17.12326894520284 28.20339325108703 29.832903707846036 24.84043409586409 4 12.375311652763958 18.42550114570137 36.77151610133578 32.42767110019889 5 13.515369258418577 38.65366032017915 33.33301190413053 14.497958517271744 6 30.465422924876123 37.720852724689166 18.126952236362552 13.686772114072166 7 26.843789387418337 32.58060205952751 22.87581297877086 17.699795574283296 8 27.657348883932226 32.31277243800607 20.646368664602623 19.38351001345908 9 27.653584312059483 14.359936349115014 20.2825307224106 37.70394861641491 10 17.06643529101236 27.86195463516566 30.77878427537489 24.29282579844709 11 33.401979603829616 23.92788958679044 23.197396504455128 19.472734304924813 12 23.641704696420913 26.001810527611735 29.159520745177552 21.196964030789804 13 28.27469280355832 21.4084953879259 26.0128956862136 24.303916122302184 14 23.81661334919594 21.184688024607027 26.71008145655594 28.288617169641096 15 24.763095169461423 27.514092315039957 24.409064490324663 23.313748025173958 16 23.45012866532395 27.393258895923005 25.818460842300546 23.3381515964525 17 22.36380089230687 27.29733752937879 27.01957141902364 23.3192901592907 18 23.375922142543693 25.796233412794635 28.944622174854846 21.88322226980683 19 23.778855626180423 26.274449323640404 28.580832080326307 21.365862969852866 20 24.61523981068386 25.033370751376093 28.010089991548742 22.341299446391304 21 25.36071878894921 25.537153127066148 27.20521456204165 21.896913521943 22 24.423321400814398 25.509917351332206 27.213488427455886 22.853272820397514 23 22.637129900084275 26.147506327669966 27.856431329547508 23.35893244269825 24 23.126420571932737 26.90802624339329 27.389746574624407 22.575806610049565 25 23.55628541731708 25.079017833726898 27.175654302543013 24.189042446413005 26 23.342641593284526 25.846294021853932 27.921364887356976 22.889699497504566 27 23.98207533111533 25.70622260081421 27.09329647345793 23.21840559461253 28 23.189830765098502 25.37564340191575 28.576260343743986 22.858265489241766 29 23.32023860295521 25.09834255661458 28.843786334046516 22.737632506383697 30 23.474301461218825 25.685152491761688 28.561481074382133 22.279064972637354 31 24.06008616008973 25.26908184415883 27.767803710353085 22.90302828539836 32 22.97180777750878 25.548567070683514 27.985985304254513 23.49363984755319 33 22.88153201395497 26.01448544085332 27.824769279621954 23.279213265569762 34 22.947876052391152 25.964905699703326 28.094777249899057 22.992440998006465 35 24.00756399598144 25.861678175257623 28.081807285982872 22.048950542778066 36 23.350152127322403 26.10937303624526 27.17098524574 23.369489590692343 37 24.089125494831066 26.085204159027743 27.48402173541926 22.341648610721933 38 23.612218246295228 25.445125581160667 27.6997099793801 23.24294619316401 39 23.900050787845714 25.263039625814653 27.49876167884313 23.338147907496502 40 23.99494454781066 25.801629376784614 27.49271327077995 22.710712804624777 41 22.522493964164195 26.374109417858676 27.714567540405 23.38882907757213 42 24.669296662737874 26.361485941616042 27.14473885647479 21.824478539171295 43 24.311858658027884 24.873777989396118 27.241718955804384 23.572644396771615 44 23.513043946968924 26.01041724327761 27.402877358534187 23.073661451219277 45 24.54267576853752 25.555907138091953 26.843584231833656 23.057832861536866 46 23.01499877257373 25.996716692515154 28.108741844153652 22.879542690757464 47 23.872200945919523 25.872240173770134 27.45026301481353 22.805295865496813 48 24.777786085471014 26.424188879251375 26.23832259042917 22.55970244484844 49 23.47630005544059 26.48870864368012 27.43570922186043 22.599282079018856 50 24.369251532709978 26.512710927791368 25.868065656710083 23.249971882788575 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4741.0 1 3840.0 2 2939.0 3 4935.5 4 6932.0 5 7916.0 6 8900.0 7 7216.5 8 5533.0 9 8130.0 10 10727.0 11 17057.5 12 23388.0 13 47895.0 14 72402.0 15 94063.5 16 115725.0 17 115619.5 18 115514.0 19 108921.0 20 102328.0 21 116808.5 22 131289.0 23 150944.0 24 170599.0 25 195110.0 26 219621.0 27 251297.0 28 282973.0 29 322048.5 30 361124.0 31 399702.0 32 438280.0 33 473523.0 34 508766.0 35 551070.5 36 593375.0 37 637881.5 38 682388.0 39 718393.0 40 754398.0 41 792627.0 42 830856.0 43 831600.0 44 832344.0 45 893171.0 46 953998.0 47 1057222.5 48 1160447.0 49 1153791.5 50 1147136.0 51 1016132.0 52 885128.0 53 822466.0 54 759804.0 55 770909.0 56 782014.0 57 751158.0 58 720302.0 59 668555.0 60 616808.0 61 551889.5 62 486971.0 63 425785.5 64 364600.0 65 315002.5 66 265405.0 67 237945.0 68 210485.0 69 187623.5 70 164762.0 71 134104.0 72 103446.0 73 94794.5 74 86143.0 75 74567.0 76 62991.0 77 47853.0 78 32715.0 79 26053.5 80 19392.0 81 16920.0 82 14448.0 83 12574.0 84 10700.0 85 9391.0 86 8082.0 87 6638.5 88 5195.0 89 3925.0 90 2655.0 91 2200.0 92 1745.0 93 1462.0 94 1179.0 95 1032.5 96 886.0 97 720.0 98 554.0 99 474.5 100 395.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.043041489407224 2 3.2357057087357716E-4 3 0.005824270275724389 4 0.008419438323751242 5 0.01860200608471157 6 0.029583595051298484 7 0.020239669382194164 8 0.0284213823885689 9 0.022715974771532765 10 0.0031498604552387 11 0.0012876788024560723 12 0.021065104511973694 13 0.0072638291420598945 14 0.012130594667240025 15 0.006966672495339263 16 0.007541175345665819 17 0.010908950675166316 18 0.021421692488038456 19 0.021679228248529667 20 0.024914933957265437 21 0.02389139439633882 22 0.029755285558292627 23 0.026869564344583378 24 0.037633238436908495 25 0.038339810907999775 26 0.028302519729880647 27 0.02900248871993369 28 0.03720401216942314 29 0.006933655090148082 30 0.007719469333698198 31 0.028183657071192393 32 0.033895668169266764 33 0.01489745322226102 34 0.010446707002489775 35 0.011859851944672338 36 0.012777735808987178 37 0.008181713006374736 38 0.012190025996584152 39 0.026935599154965736 40 0.017479414308211403 41 0.00968070320205437 42 0.015280455122478727 43 0.006359152239821527 44 0.03157784632484584 45 0.0162775807592524 46 0.013794671888875563 47 0.008089264271839428 48 0.0238517735101094 49 0.007877952878615868 50 0.01028161997653387 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1.5143528E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.62207373649138 #Duplication Level Percentage of deduplicated Percentage of total 1 73.04958345566264 28.213263986445835 2 12.815941365388051 9.899564648331346 3 5.551992372143263 6.432883763440644 4 2.824350746136378 4.363291310999745 5 1.6144127057520594 3.11759832813423 6 0.9631872981575019 2.232017451089457 7 0.6358369095450191 1.7190138003381368 8 0.44707533613700545 1.3813581278440077 9 0.32250208705568106 1.1210129447793187 >10 1.536179309276335 10.566158615998233 >50 0.11785890496400658 3.175230194405513 >100 0.09384416176772882 7.467668215768759 >500 0.014085823187229044 3.7803697932154336 >1k 0.011526985149717204 9.169890645794467 >5k 0.0011323974830589126 2.9931297414523095 >10k+ 4.901421941598278E-4 4.367548431962522 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 64851 0.42824234881066026 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 57933 0.3825594669881417 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 45950 0.3034299537069565 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 43262 0.28567979667617743 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36205 0.2390790309893441 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 33773 0.22301936510435347 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30421 0.2008844966641855 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 29703 0.19614319727873186 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 24940 0.16469081709361255 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 23061 0.1522828762227666 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 22017 0.1453888420188479 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 20439 0.13496854894051108 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 20016 0.13217527646133714 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 17995 0.11882964128306164 No Hit CTCCAGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTT 16988 0.11217993587755773 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 16545 0.10925459377761906 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 16315 0.10773579313882473 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 15872 0.10481045103888605 No Hit GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAG 15486 0.10226150735812686 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.8394968464415954E-4 6.603481038236268E-6 0.0 6.603481038236268E-6 0.0 2 2.8394968464415954E-4 6.603481038236268E-6 0.0 6.603481038236268E-6 0.0 3 2.8394968464415954E-4 6.603481038236268E-6 0.0 1.3206962076472537E-5 0.0 4 2.905531656823958E-4 6.603481038236268E-6 0.0 1.3206962076472537E-5 0.0 5 3.2357057087357716E-4 6.603481038236268E-6 0.0 1.9810443114708804E-5 0.0 6 3.43381013988286E-4 6.603481038236268E-6 0.0 3.301740519118134E-5 1.9810443114708804E-5 7 3.4998449502652223E-4 6.603481038236268E-6 0.0 3.301740519118134E-5 1.9810443114708804E-5 8 3.6319145710299474E-4 1.3206962076472537E-5 0.0 3.962088622941761E-5 1.9810443114708804E-5 9 3.6319145710299474E-4 1.3206962076472537E-5 0.0 5.282784830589015E-5 1.9810443114708804E-5 10 4.6884715371477506E-4 1.3206962076472537E-5 0.0 1.5188006387943418E-4 1.9810443114708804E-5 11 5.216750020206652E-4 1.3206962076472537E-5 0.0 1.5848354491767043E-4 1.9810443114708804E-5 12 5.41485445135374E-4 1.3206962076472537E-5 0.0 1.9150095010885178E-4 1.9810443114708804E-5 13 5.41485445135374E-4 1.3206962076472537E-5 0.0 1.9150095010885178E-4 1.9810443114708804E-5 14 5.480889261736103E-4 1.3206962076472537E-5 0.0 2.113113932235606E-4 2.6413924152945074E-5 15 5.612958882500828E-4 1.3206962076472537E-5 0.0 2.773462036059233E-4 7.263829142059895E-5 16 6.273306986324455E-4 1.3206962076472537E-5 0.0 3.1696708983534086E-4 9.244873453530776E-5 17 6.603481038236268E-4 1.3206962076472537E-5 0.0 3.6979493814123104E-4 9.244873453530776E-5 18 6.86762027976572E-4 1.3206962076472537E-5 0.0 3.962088622941761E-4 9.244873453530776E-5 19 6.999689900530445E-4 1.3206962076472537E-5 0.0 4.4243322956183E-4 9.244873453530776E-5 20 6.999689900530445E-4 1.3206962076472537E-5 0.0 5.216750020206652E-4 1.1225917765001656E-4 21 7.197794331677532E-4 1.3206962076472537E-5 0.0 6.273306986324455E-4 1.3206962076472536E-4 22 7.197794331677532E-4 1.3206962076472537E-5 0.0 7.594003193971708E-4 1.3206962076472536E-4 23 7.924177245883522E-4 3.301740519118134E-5 0.0 9.442977884677864E-4 1.3206962076472536E-4 24 8.12228167703061E-4 3.962088622941761E-5 0.0 0.0012150405110354734 1.3206962076472536E-4 25 8.254351297795335E-4 3.962088622941761E-5 0.0 0.0012876788024560723 1.3206962076472536E-4 26 8.584525349707149E-4 3.962088622941761E-5 0.0 0.0015188006387943417 1.650870259559067E-4 27 8.716594970471874E-4 3.962088622941761E-5 0.0 0.0018555781717443914 1.8489746907061552E-4 28 9.178838643148412E-4 5.282784830589015E-5 0.0 0.002806479441250414 1.9150095010885178E-4 29 9.442977884677864E-4 5.9431329344126414E-5 0.0 0.003915864255674107 1.9150095010885178E-4 30 9.509012695060226E-4 5.9431329344126414E-5 0.0 0.005989357301680295 1.9810443114708806E-4 31 9.575047505442589E-4 5.9431329344126414E-5 0.0 0.008399627880636534 1.9810443114708806E-4 32 9.905221557354401E-4 6.603481038236268E-5 0.0 0.010974985485548677 2.047079121853243E-4 33 9.905221557354401E-4 6.603481038236268E-5 0.0 0.013920138028602053 2.047079121853243E-4 34 0.0010433500040413304 6.603481038236268E-5 0.0 0.017367155130561387 2.311218363382694E-4 35 0.0010499534850795667 6.603481038236268E-5 0.0 0.021936764009020882 2.3772531737650566E-4 36 0.0010631604471560393 6.603481038236268E-5 0.0 0.02681013301523925 2.3772531737650566E-4 37 0.0010763674092325118 6.603481038236268E-5 0.0 0.03377020202954028 2.3772531737650566E-4 38 0.0010763674092325118 7.263829142059895E-5 0.0 0.04253962484831804 2.641392415294507E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTCGT 4585 0.0 14.824074 9 CGTCGTA 4575 0.0 14.807124 10 CAATGCG 1155 0.0 14.667308 19 AATGCGA 1140 0.0 14.474556 20 TGCGACG 1120 0.0 14.342424 22 TACCGTC 4860 0.0 14.212875 7 CGACGAA 1235 0.0 14.072233 38 GTCGACG 1175 0.0 14.040709 36 GCATTCG 8430 0.0 14.0173025 22 GTACTAG 1635 0.0 13.998426 1 GGCGTTA 4865 0.0 13.973243 42 ATTCGTA 8405 0.0 13.902371 24 GACCGTC 2015 0.0 13.869039 22 ATACCGT 5160 0.0 13.856554 6 CCGTCGG 2035 0.0 13.841324 24 TCGACGA 1215 0.0 13.759463 37 CGACGAG 1275 0.0 13.634806 24 GACGGCC 8965 0.0 13.567783 11 GTCGTAG 5060 0.0 13.51898 11 CGAGCCG 6860 0.0 13.468953 15 >>END_MODULE