##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558174_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4800014 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.740784297712466 30.0 26.0 31.0 16.0 33.0 2 27.687008204559405 30.0 26.0 31.0 16.0 34.0 3 27.873647243528872 30.0 26.0 31.0 16.0 34.0 4 31.204049613188626 35.0 30.0 35.0 20.0 37.0 5 30.38388929698955 35.0 28.0 35.0 17.0 37.0 6 30.751374058492328 35.0 29.0 35.0 17.0 37.0 7 30.500010416636286 35.0 28.0 35.0 17.0 37.0 8 30.5544679661351 35.0 28.0 35.0 17.0 37.0 9 31.454714090417237 35.0 28.0 38.0 17.0 39.0 10 31.104158654537258 35.0 28.0 38.0 16.0 39.0 11 31.432747696152553 35.0 28.0 38.0 17.0 39.0 12 31.081572678746355 35.0 27.0 38.0 16.0 39.0 13 31.26413943792664 35.0 28.0 38.0 16.0 39.0 14 31.634311899923624 36.0 27.0 39.0 16.0 40.0 15 31.57560519615151 35.0 27.0 39.0 16.0 40.0 16 31.43827538836345 35.0 27.0 39.0 16.0 40.0 17 31.42288064159813 35.0 27.0 39.0 16.0 40.0 18 31.425958965953015 35.0 27.0 39.0 16.0 40.0 19 31.354799381835136 35.0 27.0 39.0 13.0 40.0 20 31.378294521640978 35.0 27.0 39.0 14.0 40.0 21 31.234930981451303 35.0 27.0 39.0 13.0 40.0 22 31.13769439005803 34.0 27.0 39.0 13.0 40.0 23 30.772567955010132 34.0 27.0 39.0 12.0 40.0 24 30.656108086351416 34.0 26.0 39.0 12.0 40.0 25 30.695787345620243 34.0 26.0 39.0 12.0 40.0 26 30.53230865576642 34.0 26.0 39.0 12.0 40.0 27 30.307087229328914 34.0 25.0 38.0 11.0 40.0 28 30.21371146000824 34.0 25.0 38.0 11.0 40.0 29 30.134550440894547 34.0 25.0 38.0 11.0 40.0 30 30.008626016507453 33.0 25.0 38.0 10.0 40.0 31 29.829928412708796 33.0 25.0 38.0 10.0 40.0 32 29.525257009667055 33.0 24.0 38.0 10.0 40.0 33 29.38046639030636 33.0 24.0 38.0 9.0 40.0 34 29.239977425065845 33.0 24.0 38.0 9.0 40.0 35 29.14761727778294 33.0 24.0 38.0 9.0 40.0 36 28.97572486246915 33.0 23.0 38.0 9.0 40.0 37 28.897485923999387 32.0 23.0 38.0 9.0 40.0 38 28.777330441119545 32.0 23.0 38.0 9.0 40.0 39 28.678656978917143 32.0 23.0 38.0 9.0 40.0 40 28.439387468453216 32.0 22.0 38.0 9.0 40.0 41 28.217763114857583 31.0 22.0 37.0 9.0 40.0 42 28.164221604353653 31.0 21.0 37.0 9.0 40.0 43 28.056445668700132 31.0 21.0 37.0 8.0 40.0 44 27.754079258935494 31.0 20.0 37.0 8.0 40.0 45 27.70233107653436 31.0 20.0 37.0 8.0 40.0 46 27.333525068885216 30.0 20.0 37.0 8.0 40.0 47 27.210985426292506 30.0 19.0 37.0 8.0 40.0 48 27.05504254779257 30.0 19.0 37.0 8.0 40.0 49 26.884757419457525 30.0 18.0 37.0 8.0 39.0 50 25.82098698045464 29.0 15.0 35.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 4.0 4 24.0 5 50.0 6 81.0 7 133.0 8 339.0 9 1650.0 10 5501.0 11 15298.0 12 31733.0 13 51029.0 14 67856.0 15 81082.0 16 90482.0 17 97990.0 18 103504.0 19 108348.0 20 113164.0 21 118407.0 22 124423.0 23 130829.0 24 138493.0 25 146106.0 26 155114.0 27 166527.0 28 177046.0 29 190145.0 30 205071.0 31 222033.0 32 241300.0 33 262610.0 34 286336.0 35 309497.0 36 331948.0 37 338343.0 38 319454.0 39 168064.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.38647422123556 29.69287878134287 13.145422502411611 18.775224495009958 2 17.758319899299956 29.059137107973793 32.43380518075216 20.748737811974088 3 20.64735398190264 31.541792435376692 27.63943451165628 20.171419071064392 4 15.673284124123215 23.363909046645688 31.699855347506624 29.26295148172447 5 14.50158617707883 42.0811476733465 30.471414953300236 12.945851196274438 6 30.129098630953955 38.50020285945351 17.341638866829385 14.029059642763148 7 27.524455725068204 33.89024756922168 21.272474919168534 17.312821786541583 8 30.286770729076608 32.47921221142311 19.116325970529196 18.11769108897109 9 29.24486921608836 14.334375976110136 19.049919118954005 37.37083568884751 10 18.570988681861685 30.7144764918313 28.428827564539805 22.28570726176721 11 35.158893255599224 25.019750197501978 20.63203965372987 19.189316893168932 12 24.470988801013522 27.736041899566484 27.217902542041784 20.575066757378213 13 30.31897815982681 21.691852442625454 24.591638743238427 23.39753065430931 14 26.06342515858373 21.738383982548235 25.377647533136162 26.820543325731872 15 26.741721777038112 27.45027774293809 23.67100702076478 22.13699345925902 16 24.687752879123884 27.9345020672022 24.9597268509606 22.418018202713323 17 24.849519901292556 28.020988249530486 25.71741868865944 21.412073160517522 18 25.323270720175294 24.82186953484064 28.70841113355258 21.14644861143148 19 25.36434649960025 26.88459702421795 28.218546014561984 19.53251046161982 20 26.130963630752653 25.02911527690926 27.903656303663222 20.936264788674873 21 25.71944754696851 25.81636437894877 26.897807024855386 21.56638104922733 22 25.401825335516943 26.517106711714145 25.974448970354814 22.106618982414105 23 23.33874294468735 27.170252305440496 27.223118961854738 22.26788578801742 24 23.680893068263263 28.18735243714596 26.256096069110008 21.875658425480772 25 25.50411742615121 24.909500819650606 26.017415022467972 23.568966731730214 26 25.01979646730999 25.957857280390495 26.550146743918734 22.472199508380783 27 25.013393914880343 25.804421544375174 26.521035062570576 22.661149478173908 28 25.520784491227282 25.005136887100598 28.489530127999142 20.984548493672982 29 25.581525201751944 25.44064157262966 27.91637654473003 21.061456680888373 30 25.830206561730485 25.930713283117473 27.39749887440389 20.84158128074815 31 26.673058541081407 25.36566946618541 27.30607082894248 20.655201163790704 32 24.013635085775707 26.257230640472663 28.65743753833227 21.07169673541936 33 24.292031443090504 26.23604487309979 27.604111429738836 21.867812254070873 34 23.758117847075074 26.229506147374476 27.74967132746202 22.262704678088426 35 24.72438579176019 27.25318378607341 27.599153504503438 20.423276917662957 36 25.013188796898362 25.907360057072275 26.996758847953384 22.08269229807598 37 26.866393704252197 26.068236992268655 26.448616200566537 20.616753102912607 38 26.344786921178493 24.876201032812688 26.853254964303687 21.92575708170513 39 26.779199475886006 24.953448208318644 26.647983436397414 21.619368879397936 40 25.897622356640255 26.71853545003532 26.265364251795575 21.11847794152885 41 24.232037184153356 27.12598071662709 26.387723012309785 22.25425908690977 42 27.659275671808075 26.72701311143333 25.99060840742768 19.62310280933092 43 26.809658568273946 24.477395635905886 26.37724102397641 22.335704771843755 44 25.60798685001296 26.485958537864146 27.250464075512397 20.655590536610493 45 27.991441371330843 24.80906336189752 25.894998236225735 21.304497030545903 46 25.0523402684189 25.97267054551395 27.99195893455883 20.983030251508325 47 26.71262373437323 25.50165145841498 26.781440578436516 21.004284228775276 48 26.95300152340651 26.65571742111511 25.70179114348839 20.689489911989988 49 25.94811660107504 25.563400808434455 28.35573116106247 20.13275142942804 50 27.518317660856535 26.291507860129265 24.03938409072584 22.150790388288364 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1329.0 1 1114.5 2 900.0 3 1107.0 4 1314.0 5 1873.5 6 2433.0 7 1935.5 8 1438.0 9 2152.5 10 2867.0 11 5441.0 12 8015.0 13 15875.5 14 23736.0 15 29373.0 16 35010.0 17 37373.0 18 39736.0 19 37860.5 20 35985.0 21 38977.5 22 41970.0 23 45800.0 24 49630.0 25 54922.0 26 60214.0 27 67554.5 28 74895.0 29 84663.5 30 94432.0 31 105258.0 32 116084.0 33 127834.5 34 139585.0 35 151851.0 36 164117.0 37 177858.5 38 191600.0 39 205956.5 40 220313.0 41 236663.0 42 253013.0 43 256896.0 44 260779.0 45 286512.0 46 312245.0 47 388448.5 48 464652.0 49 455491.0 50 446330.0 51 396809.0 52 347288.0 53 302584.5 54 257881.0 55 250885.5 56 243890.0 57 227007.5 58 210125.0 59 191946.5 60 173768.0 61 158081.0 62 142394.0 63 124555.0 64 106716.0 65 92027.0 66 77338.0 67 68247.0 68 59156.0 69 52069.0 70 44982.0 71 36854.5 72 28727.0 73 25713.0 74 22699.0 75 18924.5 76 15150.0 77 12283.5 78 9417.0 79 7617.5 80 5818.0 81 5059.0 82 4300.0 83 3548.0 84 2796.0 85 2402.0 86 2008.0 87 1698.5 88 1389.0 89 1020.0 90 651.0 91 521.0 92 391.0 93 321.5 94 252.0 95 197.5 96 143.0 97 106.0 98 69.0 99 56.5 100 44.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.028229084331837368 2 3.3333236111394673E-4 3 0.0041249879687850904 4 0.004895819053861094 5 0.015395788428950414 6 0.02343743164082438 7 0.01731244950535561 8 0.024229095998470004 9 0.020645773116495077 10 0.0022499934375191403 11 0.0012916628993165438 12 0.019145777491482316 13 0.00585414959206369 14 0.010395803012241214 15 0.005249984687544661 16 0.006041649045190285 17 0.007833310486177749 18 0.0179791142275835 19 0.016770784418545445 20 0.02056244002621659 21 0.02195826928838124 22 0.025520758897786548 23 0.023916596909925678 24 0.03406240065133143 25 0.03391656774334408 26 0.02454159508701433 27 0.024854094175558655 28 0.02891658232663488 29 0.0064166479514434745 30 0.00697914631082326 31 0.02527075962695109 32 0.031479074852698345 33 0.012770796085178086 34 0.008416642118127156 35 0.009604138654595591 36 0.010124970468836132 37 0.006874979947975151 38 0.010395803012241214 39 0.02204160237865973 40 0.01508328934040609 41 0.00697914631082326 42 0.012812462630317328 43 0.005312484505253527 44 0.025541592170356172 45 0.013479127352545223 46 0.013541627170254086 47 0.00660414740457007 48 0.018770778585229127 49 0.007645811033051154 50 0.008562475026114508 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4800014.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.58388716490614 #Duplication Level Percentage of deduplicated Percentage of total 1 89.79413569875605 55.29871920942462 2 5.736569489911495 7.0656049636070515 3 1.8637762849603439 3.4433576530087726 4 0.8279544273250394 2.039546081202788 5 0.4394323434801512 1.3530975928745952 6 0.2751474352119076 1.0166789162282062 7 0.18304736042214095 0.7890937593049723 8 0.13712676599634852 0.6755839427526091 9 0.09423198780564665 0.5222854893912979 >10 0.5281838400046579 6.21568436637845 >50 0.0594719852232412 2.5475474128095468 >100 0.05067353047419836 6.325372852667896 >500 0.006182371772920324 2.6614153123279816 >1k 0.0034383234163654726 4.291120736979795 >5k 2.3142561456298503E-4 1.0062381990168026 >10k+ 3.967296249651172E-4 4.748653512024725 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 48990 1.0206220231857657 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 34194 0.7123729222456435 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 20609 0.4293529143873331 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 18353 0.38235305147026655 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 17907 0.37306141190421527 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 17510 0.3647906026940755 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14947 0.3113949250981351 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 13795 0.287394995097931 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 12853 0.26777005233734735 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 11925 0.24843677539273845 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11885 0.24760344448995358 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10265 0.21385354292716646 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 8612 0.17941614336958184 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 8254 0.1719578317896573 No Hit ACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 6942 0.14462457817831365 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 6879 0.1433120820064275 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 6854 0.14279125019218694 No Hit GGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG 6172 0.12858295829970495 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 5709 0.11893715309997013 No Hit CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT 4879 0.10164553686718414 No Hit ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG 4858 0.10120803814322207 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0019166610764051939 0.0 0.0 0.0 0.0 2 0.0019166610764051939 0.0 0.0 0.0 0.0 3 0.0019374943489748155 0.0 0.0 0.0 0.0 4 0.0019374943489748155 0.0 0.0 0.0 0.0 5 0.0020208274392533023 0.0 0.0 0.0 0.0 6 0.0020208274392533023 0.0 0.0 0.0 0.0 7 0.002041660711822924 0.0 0.0 0.0 0.0 8 0.002041660711822924 0.0 0.0 0.0 2.083327256962167E-5 9 0.002041660711822924 0.0 0.0 0.0 2.083327256962167E-5 10 0.002083327256962167 0.0 0.0 2.083327256962167E-5 4.166654513924334E-5 11 0.002104160529531789 0.0 0.0 4.166654513924334E-5 4.166654513924334E-5 12 0.002104160529531789 0.0 0.0 4.166654513924334E-5 4.166654513924334E-5 13 0.002104160529531789 0.0 0.0 4.166654513924334E-5 6.249981770886501E-5 14 0.002104160529531789 0.0 0.0 4.166654513924334E-5 6.249981770886501E-5 15 0.0021249938021014104 0.0 0.0 6.249981770886501E-5 1.2499963541773003E-4 16 0.0021249938021014104 0.0 0.0 6.249981770886501E-5 3.749989062531901E-4 17 0.0021458270746710323 0.0 0.0 6.249981770886501E-5 3.749989062531901E-4 18 0.0021666603472406537 0.0 0.0 8.333309027848668E-5 3.9583217882281174E-4 19 0.0021666603472406537 0.0 0.0 1.0416636284810836E-4 3.9583217882281174E-4 20 0.002208326892379897 0.0 0.0 1.2499963541773003E-4 3.9583217882281174E-4 21 0.002291659982658384 0.0 0.0 1.6666618055697336E-4 3.9583217882281174E-4 22 0.0023124932552280055 0.0 0.0 2.2916599826583838E-4 3.9583217882281174E-4 23 0.0023333265277976274 0.0 0.0 4.1666545139243345E-4 3.9583217882281174E-4 24 0.002354159800367249 0.0 0.0 4.999985416709201E-4 3.9583217882281174E-4 25 0.002354159800367249 0.0 0.0 5.208318142405418E-4 3.9583217882281174E-4 26 0.0023749930729368707 0.0 0.0 8.333309027848669E-4 3.9583217882281174E-4 27 0.002416659618076114 2.083327256962167E-5 0.0 9.166639930633535E-4 4.7916526910129847E-4 28 0.002479159435784979 2.083327256962167E-5 0.0 0.0012916628993165436 4.999985416709201E-4 29 0.0025208259809242225 2.083327256962167E-5 0.0 0.0019166610764051939 4.999985416709201E-4 30 0.002541659253493844 2.083327256962167E-5 0.0 0.0024999927083546006 4.999985416709201E-4 31 0.0025624925260634658 2.083327256962167E-5 0.0 0.003166657430582494 4.999985416709201E-4 32 0.002583325798633087 2.083327256962167E-5 0.0 0.004083321423645848 4.999985416709201E-4 33 0.002604159071202709 2.083327256962167E-5 0.0 0.005249984687544661 4.999985416709201E-4 34 0.0026458256163419524 2.083327256962167E-5 0.0 0.006270815043456123 5.416650868101634E-4 35 0.0026874921614811957 2.083327256962167E-5 0.0 0.007541644670203045 5.416650868101634E-4 36 0.0027083254340508176 2.083327256962167E-5 0.0 0.009645805199734835 5.416650868101634E-4 37 0.0027083254340508176 2.083327256962167E-5 0.0 0.011999965000102083 5.416650868101634E-4 38 0.0027083254340508176 2.083327256962167E-5 0.0 0.01545828824665928 5.833316319494068E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTCGT 1370 0.0 19.588114 9 CGTCGTA 1405 0.0 18.941818 10 TACCGTC 1500 0.0 18.77249 7 ATACCGT 1605 0.0 18.504805 6 GTACTAG 725 0.0 17.906376 1 GTCGTAG 1630 0.0 17.00218 11 GCGCAGT 865 0.0 16.782223 11 ACTGCGC 880 0.0 16.749245 8 TGCGCAG 1030 0.0 16.655972 10 AATGCGA 730 0.0 16.576841 20 TGCGACG 760 0.0 16.503212 22 CGAACGT 860 0.0 16.372551 4 CTGCGCA 1030 0.0 16.016861 9 CAATTCG 580 0.0 15.930815 15 CAATGCG 750 0.0 15.841103 19 TCGACGA 405 0.0 15.751064 37 AATTCGT 565 0.0 15.575494 16 AGATACC 1895 0.0 15.557163 4 GTCGACG 440 0.0 15.498011 36 CGCATCG 900 0.0 15.398346 13 >>END_MODULE