##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558172_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11908692 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.29557469451725 31.0 30.0 33.0 26.0 34.0 2 30.399009899659845 31.0 30.0 34.0 26.0 34.0 3 30.63248885771838 31.0 30.0 34.0 26.0 34.0 4 34.296098597562185 35.0 35.0 37.0 30.0 37.0 5 33.863055657162015 35.0 35.0 37.0 28.0 37.0 6 33.91787964622815 35.0 35.0 37.0 28.0 37.0 7 33.7650541302101 35.0 35.0 37.0 28.0 37.0 8 33.756154076367075 35.0 35.0 37.0 28.0 37.0 9 35.09709479428975 38.0 35.0 39.0 28.0 39.0 10 34.993991279646835 37.0 34.0 39.0 27.0 39.0 11 35.09170360607193 38.0 35.0 39.0 27.0 39.0 12 34.92892410014467 37.0 34.0 39.0 27.0 39.0 13 34.96477245359944 37.0 34.0 39.0 27.0 39.0 14 35.80323548547565 38.0 34.0 40.0 27.0 41.0 15 35.77694057416213 38.0 34.0 40.0 27.0 41.0 16 35.73346955316335 38.0 34.0 40.0 27.0 41.0 17 35.71258044124409 38.0 34.0 40.0 27.0 41.0 18 35.69768871342042 38.0 34.0 40.0 27.0 41.0 19 35.73479337613232 39.0 34.0 40.0 27.0 41.0 20 35.71074010479069 39.0 34.0 40.0 27.0 41.0 21 35.62514397047131 39.0 34.0 40.0 27.0 41.0 22 35.57320224588897 39.0 34.0 40.0 26.0 41.0 23 35.314842049823774 38.0 34.0 40.0 25.0 41.0 24 35.27548575443886 38.0 34.0 40.0 25.0 41.0 25 35.26747060046561 38.0 34.0 40.0 25.0 41.0 26 35.191007123200436 38.0 34.0 40.0 25.0 41.0 27 34.98865752846744 38.0 33.0 40.0 24.0 41.0 28 34.96703357513991 38.0 33.0 40.0 24.0 41.0 29 34.930057557958506 38.0 33.0 40.0 24.0 41.0 30 34.82418975988295 38.0 33.0 40.0 24.0 41.0 31 34.709613952565064 38.0 33.0 40.0 24.0 41.0 32 34.5490037025057 38.0 33.0 40.0 24.0 41.0 33 34.43102886530276 38.0 33.0 40.0 24.0 41.0 34 34.320117104380564 38.0 32.0 40.0 23.0 41.0 35 34.24033294336607 38.0 32.0 40.0 23.0 41.0 36 34.068358640898595 38.0 32.0 40.0 22.0 41.0 37 34.01712127578747 38.0 32.0 40.0 22.0 41.0 38 33.92918584173644 37.0 32.0 40.0 22.0 41.0 39 33.86149318497783 37.0 31.0 40.0 21.0 41.0 40 33.70998015567117 37.0 31.0 40.0 21.0 41.0 41 33.571875819779365 37.0 31.0 40.0 20.0 41.0 42 33.50256678063384 37.0 31.0 40.0 20.0 41.0 43 33.37092234814705 37.0 31.0 40.0 19.0 41.0 44 33.179756013506776 37.0 30.0 40.0 18.0 41.0 45 33.07887843601967 37.0 30.0 40.0 18.0 41.0 46 32.8360007127567 37.0 30.0 40.0 17.0 41.0 47 32.708740892786544 36.0 30.0 40.0 16.0 41.0 48 32.57616008542332 36.0 30.0 40.0 15.0 41.0 49 32.4595500496612 36.0 30.0 39.0 15.0 41.0 50 31.245902908564602 35.0 27.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 5.0 4 35.0 5 71.0 6 165.0 7 289.0 8 584.0 9 1771.0 10 4756.0 11 11609.0 12 24077.0 13 40579.0 14 56852.0 15 70280.0 16 78823.0 17 84914.0 18 90653.0 19 94110.0 20 99958.0 21 105040.0 22 112762.0 23 122755.0 24 135741.0 25 153153.0 26 173028.0 27 196507.0 28 226289.0 29 264411.0 30 314955.0 31 381919.0 32 473961.0 33 596639.0 34 759839.0 35 966415.0 36 1234777.0 37 1549372.0 38 1746814.0 39 1734784.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.34437023950045 21.286504776324307 14.048928331319555 23.320196652855692 2 14.655230615444765 23.63443868056983 37.508170527387804 24.202160176597594 3 17.14901383979164 29.282548661389285 30.30224499299004 23.266192505829036 4 12.33993620290379 19.328845612505198 36.699277915764455 31.631940268826558 5 12.804112990322658 39.715134736396706 33.8204745973849 13.660277675895738 6 29.462902453570315 38.16041864411051 18.59294756028929 13.783731342029887 7 25.660048723711228 33.49756826585683 23.47906380461197 17.36331920581997 8 27.39515679379877 33.074094849215314 20.92069602210923 18.610052334876688 9 27.296609177961944 15.159534326289254 20.346729651510724 37.19712684423808 10 16.565598750252867 28.82362420453785 31.72503883626326 22.885738208946023 11 32.76048634709971 24.479373276235897 23.053370474211263 19.706769902453132 12 22.766046299187785 26.971521979675046 29.521607424318958 20.740824296818214 13 28.13868377140717 21.98186736268046 26.39240128957382 23.487047576338554 14 23.469112841038136 21.90462849260022 26.880397028834373 27.74586163752727 15 24.996468716015066 27.71166079518973 25.069655731303296 22.222214757491905 16 23.106213485099275 28.2442699371253 26.13960081660692 22.50991576116851 17 22.352563063026366 27.93651316201092 27.33535823440406 22.375565540558643 18 23.03947996915521 26.214954515191124 29.60679781385333 21.138767701800333 19 23.27578423265789 27.525769429278274 29.156358544993665 20.04208779307017 20 24.409721898495476 25.284552661151455 29.20034299776316 21.105382442589914 21 24.214605167704857 26.771647194268823 27.22565177538696 21.788095862639363 22 23.46319189260451 26.838431422684145 27.067283288538736 22.63109339617261 23 21.934421349482054 27.10420317340003 27.741572729812457 23.21980274730545 24 22.51376834238902 28.38460969815492 27.262645201829283 21.83897675762677 25 23.517636232053896 25.604615909970097 27.054215604863725 23.82353225311228 26 22.801270645938565 26.38718817423688 27.757278671389113 23.054262508435443 27 23.649786071915486 26.344607119814935 27.31505953422417 22.690547274045418 28 22.466889855294774 26.182566371287415 28.676717351312753 22.673826422105066 29 22.84402928558484 26.156141862191944 29.145945720793314 21.853883131429903 30 23.021658496078857 26.817303551501574 28.69974114341649 21.461296809003077 31 23.8190591010762 26.011102592853323 27.59622371735519 22.573614588715284 32 21.967669726459928 26.753092189950227 28.474675307874964 22.80456277571488 33 22.35023151777786 26.745730885747303 27.970814474108668 22.933223122366172 34 21.709428095302922 27.109069209865005 28.399701329112325 22.781801365719748 35 23.227313535244612 27.113698339073554 28.111018450165908 21.547969675515926 36 22.899485330465343 27.042507057578792 27.28464915514815 22.773358456807717 37 23.873835288711344 26.80487000313747 27.621788708993666 21.699505999157516 38 23.471615720524017 26.360257473618226 27.4890057045033 22.679121101354454 39 23.632632401749998 25.849509894422646 27.788874521918384 22.728983181908973 40 23.500818376791962 26.62533964652573 27.35513454168212 22.518707435000188 41 21.92844941025641 27.30663114384651 27.836298966454905 22.928620479442177 42 24.790448571872258 26.95515473878961 27.2393970374602 21.014999651877933 43 23.953272296331328 25.33184503015124 27.08177415323924 23.63310852027819 44 23.119329571471674 26.57641357092601 27.72379649658993 22.580460361012385 45 24.86332223449827 25.97885804199416 26.888744151904966 22.269075571602603 46 22.62816432533796 26.73361864265784 28.532659748684015 22.105557283320188 47 23.813343280995017 26.527521453424583 27.44853395160223 22.210601313978167 48 24.414171788962584 27.42540312725048 26.60539061905489 21.555034464732046 49 23.262883390734117 26.956682905052176 28.412511033740678 21.367922670473025 50 24.087130019317325 27.33758355906044 25.66265679474843 22.912629626873805 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1287.0 1 1102.5 2 918.0 3 1815.0 4 2712.0 5 3451.0 6 4190.0 7 4048.5 8 3907.0 9 5298.5 10 6690.0 11 10438.5 12 14187.0 13 29454.5 14 44722.0 15 61416.0 16 78110.0 17 81224.0 18 84338.0 19 88003.0 20 91668.0 21 108594.0 22 125520.0 23 141327.0 24 157134.0 25 174836.5 26 192539.0 27 211344.5 28 230150.0 29 254602.5 30 279055.0 31 334623.0 32 390191.0 33 416255.0 34 442319.0 35 471544.0 36 500769.0 37 526978.5 38 553188.0 39 588991.0 40 624794.0 41 656101.0 42 687408.0 43 681033.0 44 674658.0 45 741043.5 46 807429.0 47 928099.5 48 1048770.0 49 1043021.0 50 1037272.0 51 918351.5 52 799431.0 53 679527.5 54 559624.0 55 544654.5 56 529685.0 57 499918.5 58 470152.0 59 432876.0 60 395600.0 61 346709.0 62 297818.0 63 259444.5 64 221071.0 65 187573.5 66 154076.0 67 137385.0 68 120694.0 69 103538.5 70 86383.0 71 70408.5 72 54434.0 73 48907.5 74 43381.0 75 36251.0 76 29121.0 77 23683.5 78 18246.0 79 15480.0 80 12714.0 81 11263.0 82 9812.0 83 8642.0 84 7472.0 85 6582.5 86 5693.0 87 4720.5 88 3748.0 89 2885.5 90 2023.0 91 1688.0 92 1353.0 93 1126.0 94 899.0 95 765.0 96 631.0 97 523.0 98 415.0 99 353.0 100 291.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04091969126416234 2 3.023002022388353E-4 3 0.005349034134059391 4 0.007893394169569587 5 0.018650243032568143 6 0.03016284240116379 7 0.019935018892083194 8 0.028869669313808768 9 0.02316795161047074 10 0.0030481937059082557 11 0.0013435564543948235 12 0.022991609825831417 13 0.007406354954851465 14 0.012142391456593217 15 0.007070465841252759 16 0.007406354954851465 17 0.01074005440731862 18 0.022076311991274945 19 0.022059517535595007 20 0.025821475607900518 21 0.02405805776150731 22 0.030322389730123172 23 0.028164302175251486 24 0.03839212568433208 25 0.039021917772329655 26 0.02994451447732463 27 0.029583433680206023 28 0.03829975617809244 29 0.007171232575332371 30 0.007893394169569587 31 0.029768172692685307 32 0.03513400128242464 33 0.01537532417498076 34 0.01067287658459888 35 0.012444691658832052 36 0.013721070290507136 37 0.008565172396767 38 0.013502742366667977 39 0.0276940574162133 40 0.018440312336568954 41 0.010320193015320238 42 0.016366197060096944 43 0.006079592956136576 44 0.03315225551219227 45 0.017105153110014096 46 0.01552647427610018 47 0.008699528042206483 48 0.024335166280226243 49 0.007549107828130914 50 0.010462945888599688 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1.1908692E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.1586510521264 #Duplication Level Percentage of deduplicated Percentage of total 1 73.9674335768854 27.485300535048225 2 11.89009762627762 8.83639977341133 3 5.460766090430608 6.0874410489478645 4 2.8224808498438256 4.195183240026235 5 1.6571381230759168 3.0788508630276836 6 1.0200318590183657 2.2741804746789147 7 0.6755707304456811 1.7572307923562842 8 0.4609186329718437 1.3701691716819089 9 0.3328625383915416 1.113185062117469 >10 1.4711999640752962 9.606503400979625 >50 0.10807994573542173 2.8054946304327557 >100 0.09927972327722985 7.828112532947716 >500 0.017524851562632025 4.591544688197318 >1k 0.014951691545639936 11.118166198599997 >5k 0.001079219327568055 2.65976226524117 >10k+ 5.845771357660298E-4 5.192475322305599 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 72925 0.6123678402296406 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 60050 0.5042535317900572 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 53197 0.4467073294027589 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 46211 0.38804429571274496 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 32635 0.2740435305573442 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30095 0.25271457184382634 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 28346 0.2380278203517229 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 26203 0.22003256109067226 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 26171 0.2197638497997933 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 21973 0.1845122873276091 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19092 0.16031987392066233 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 18362 0.15418989759748594 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 17533 0.14722859571815278 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16736 0.14053600512969855 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 16374 0.13749620865163026 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 14989 0.12586604809327506 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 13969 0.11730087569650806 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 13810 0.11596571646995321 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 13666 0.11475651566099786 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 12777 0.10729138011126663 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 12755 0.10710664109878734 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.1146416415841473E-4 0.0 0.0 0.0 0.0 2 4.1146416415841473E-4 0.0 0.0 0.0 0.0 3 4.2825861983835E-4 0.0 0.0 0.0 0.0 4 4.2825861983835E-4 0.0 0.0 0.0 0.0 5 4.5345030335825295E-4 2.5191683519902943E-5 0.0 8.397227839967648E-6 0.0 6 4.618475311982206E-4 2.5191683519902943E-5 0.0 8.397227839967648E-6 0.0 7 4.618475311982206E-4 2.5191683519902943E-5 0.0 8.397227839967648E-6 0.0 8 4.7024475903818824E-4 2.5191683519902943E-5 0.0 1.6794455679935295E-5 0.0 9 4.7024475903818824E-4 2.5191683519902943E-5 0.0 5.878059487977353E-5 0.0 10 4.786419868781559E-4 2.5191683519902943E-5 0.0 1.931362403192559E-4 0.0 11 4.786419868781559E-4 3.358891135987059E-5 0.0 2.0153346815922354E-4 0.0 12 4.786419868781559E-4 3.358891135987059E-5 0.0 2.7710851871893237E-4 0.0 13 4.786419868781559E-4 3.358891135987059E-5 0.0 2.7710851871893237E-4 0.0 14 4.786419868781559E-4 4.1986139199838235E-5 0.0 3.023002022388353E-4 0.0 15 4.870392147181235E-4 4.1986139199838235E-5 0.0 3.2749188575873823E-4 0.0 16 4.870392147181235E-4 5.0383367039805886E-5 0.0 4.030669363184471E-4 0.0 17 6.129976323176382E-4 5.0383367039805886E-5 0.0 4.450530755182853E-4 0.0 18 6.129976323176382E-4 5.0383367039805886E-5 0.0 4.954364425580912E-4 0.0 19 6.549837715174765E-4 5.0383367039805886E-5 0.0 5.290253539179618E-4 0.0 20 6.549837715174765E-4 5.0383367039805886E-5 0.0 5.878059487977353E-4 0.0 21 6.717782271974118E-4 5.0383367039805886E-5 0.0 6.213948601576059E-4 0.0 22 6.801754550373794E-4 5.878059487977353E-5 0.0 6.969699107173147E-4 0.0 23 6.969699107173147E-4 6.717782271974118E-5 0.0 0.001024461796476053 0.0 24 7.221615942372176E-4 6.717782271974118E-5 0.0 0.0012931730873550176 0.0 25 7.473532777571206E-4 6.717782271974118E-5 0.0 0.0014191315049545323 0.0 26 7.893394169569589E-4 6.717782271974118E-5 0.0 0.0016626511123135942 0.0 27 7.893394169569589E-4 8.397227839967647E-5 0.0 0.0019901429980723325 0.0 28 8.061338726368942E-4 9.236950623964411E-5 0.0 0.003014604794548385 0.0 29 8.229283283168295E-4 9.236950623964411E-5 0.0 0.004030669363184471 0.0 30 8.733116953566353E-4 9.236950623964411E-5 0.0 0.005878059487977353 0.0 31 8.985033788765383E-4 9.236950623964411E-5 0.0 0.008187297143968457 0.0 32 8.985033788765383E-4 9.236950623964411E-5 0.0 0.010639287673239009 0.0 33 9.656812015962794E-4 9.236950623964411E-5 0.0 0.013326400582028657 8.397227839967648E-6 34 9.74078429436247E-4 9.236950623964411E-5 0.0 0.01667689449017575 8.397227839967648E-6 35 9.74078429436247E-4 9.236950623964411E-5 0.0 0.020993069599919117 8.397227839967648E-6 36 9.824756572762148E-4 9.236950623964411E-5 0.0 0.02548558649430181 8.397227839967648E-6 37 9.9927011295615E-4 9.236950623964411E-5 0.0 0.031985040842436765 8.397227839967648E-6 38 0.0010076673407961177 9.236950623964411E-5 0.0 0.04013874907504535 8.397227839967648E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGAG 1385 0.0 20.654781 24 TGCGACG 1495 0.0 18.692825 22 AATGCGA 1560 0.0 18.334425 20 CAATGCG 1580 0.0 17.545275 19 GACGAGT 1580 0.0 17.408512 25 ATCGTCA 1650 0.0 16.795494 10 TCGACGA 1515 0.0 16.55245 37 GTACTAG 1970 0.0 16.086298 1 GTCGACG 1520 0.0 16.063843 36 CGTCGTA 2770 0.0 16.03902 10 CCGTCGG 2765 0.0 15.996609 24 CGACGAA 1610 0.0 15.986849 38 GACCGTC 2865 0.0 15.975376 22 CCGTCGT 2840 0.0 15.877557 9 CATTGCG 1640 0.0 15.8291445 29 GTGATCG 1980 0.0 15.77633 8 CAATTCG 1705 0.0 15.612453 15 GTCGGCT 2875 0.0 15.461104 26 CGAACAA 1780 0.0 15.448865 41 TGATCGC 2015 0.0 15.3919 9 >>END_MODULE