##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558168_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16219910 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.582765440745355 33.0 32.0 34.0 25.0 34.0 2 31.62848714943548 33.0 32.0 34.0 27.0 34.0 3 31.653820397277173 33.0 32.0 34.0 27.0 34.0 4 31.5170701317085 33.0 32.0 34.0 27.0 34.0 5 31.57576916271422 33.0 32.0 34.0 27.0 34.0 6 34.89253701161104 38.0 36.0 38.0 26.0 38.0 7 34.94962789559251 38.0 36.0 38.0 26.0 38.0 8 35.026047678439646 38.0 36.0 38.0 26.0 38.0 9 35.18301032496481 38.0 36.0 38.0 28.0 38.0 10 35.12967137302242 38.0 36.0 38.0 28.0 38.0 11 35.15804082760015 38.0 36.0 38.0 28.0 38.0 12 35.08757841443017 38.0 36.0 38.0 27.0 38.0 13 35.13419260649412 38.0 36.0 38.0 27.0 38.0 14 35.128150649417904 38.0 36.0 38.0 27.0 38.0 15 35.103041262251146 38.0 36.0 38.0 27.0 38.0 16 35.0878128793563 38.0 36.0 38.0 27.0 38.0 17 35.04560426044288 38.0 36.0 38.0 27.0 38.0 18 35.057133670902 38.0 36.0 38.0 27.0 38.0 19 35.061533448705944 38.0 36.0 38.0 27.0 38.0 20 35.03177711836872 38.0 36.0 38.0 26.0 38.0 21 35.01877969729795 38.0 36.0 38.0 26.0 38.0 22 35.04996710832551 38.0 36.0 38.0 27.0 38.0 23 35.04520043576074 38.0 36.0 38.0 27.0 38.0 24 35.04848386951592 38.0 36.0 38.0 27.0 38.0 25 35.0480004512972 38.0 36.0 38.0 27.0 38.0 26 35.03106484561258 38.0 36.0 38.0 27.0 38.0 27 35.03781463645606 38.0 36.0 38.0 27.0 38.0 28 35.05669322456166 38.0 36.0 38.0 27.0 38.0 29 35.05577694327527 38.0 36.0 38.0 27.0 38.0 30 35.05832368983552 38.0 36.0 38.0 27.0 38.0 31 35.087849254404 38.0 36.0 38.0 27.0 38.0 32 35.10838864087409 38.0 36.0 38.0 27.0 38.0 33 35.0803683867543 38.0 36.0 38.0 27.0 38.0 34 35.066522810545806 38.0 36.0 38.0 27.0 38.0 35 35.055774538822966 38.0 36.0 38.0 27.0 38.0 36 35.03818091469065 38.0 36.0 38.0 27.0 38.0 37 35.04019103681833 38.0 36.0 38.0 27.0 38.0 38 35.01431820521815 38.0 36.0 38.0 25.0 38.0 39 35.02427769327943 38.0 36.0 38.0 25.0 38.0 40 34.95169578622816 38.0 36.0 38.0 25.0 38.0 41 34.998852952944866 38.0 36.0 38.0 25.0 38.0 42 34.88748124989596 38.0 36.0 38.0 25.0 38.0 43 34.96944514488675 38.0 36.0 38.0 25.0 38.0 44 34.95920926811554 38.0 36.0 38.0 25.0 38.0 45 34.97526416607737 38.0 36.0 38.0 25.0 38.0 46 34.95005379191377 38.0 36.0 38.0 25.0 38.0 47 34.89703605013838 38.0 36.0 38.0 25.0 38.0 48 34.857679913143784 38.0 36.0 38.0 25.0 38.0 49 34.784663108488274 38.0 36.0 38.0 25.0 38.0 50 34.43731327732398 38.0 35.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 48.0 4 876.0 5 1908.0 6 2905.0 7 1433.0 8 600.0 9 422.0 10 352.0 11 352.0 12 374.0 13 343.0 14 412.0 15 477.0 16 998.0 17 3560.0 18 19078.0 19 59929.0 20 111230.0 21 149552.0 22 174226.0 23 192735.0 24 211560.0 25 232528.0 26 255837.0 27 281659.0 28 312119.0 29 350277.0 30 396769.0 31 450214.0 32 524181.0 33 626371.0 34 795488.0 35 1121810.0 36 2138337.0 37 7800950.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.27589592513825 18.586664541837386 13.32021267699133 24.81722685603303 2 15.045730833278359 20.812809688833045 38.887305786530256 25.25415369135834 3 18.057164861866546 26.41736746245074 29.83405440257501 25.691413273107706 4 12.686373183248728 17.254289504086262 36.96862179377703 33.090715518887976 5 13.716401174480017 36.944504382346246 34.696636754998515 14.642457688175222 6 31.109793031065113 36.0788033089019 18.584967722085604 14.226435937947384 7 26.936338466338665 31.34754082160204 23.446149400885492 18.269971311173798 8 26.884619910142444 32.94130814766542 21.08778520568041 19.086286736511727 9 26.96728488958689 14.400066645891249 20.458338604323963 38.1743098601979 10 16.188676667602746 28.02229906263053 32.46364915753125 23.325375112235477 11 32.90159612473718 23.26323853563558 23.547516863696707 20.28764847593053 12 23.39641670925555 25.32292739294148 30.53845984406638 20.74219605373659 13 29.40506419861153 21.04991015266828 25.824669931516624 23.720355717203564 14 23.19445071804088 20.414947187013976 27.30692893837666 29.08367315656848 15 25.048200322818303 26.74665204497146 24.71687381180474 23.488273820405496 16 23.132873033021887 26.580177539470352 26.71234381022841 23.57460561727935 17 22.651531673148053 26.754038669931063 27.487503265885156 23.106926391035728 18 23.445086308615217 25.220210799195343 29.343645828525933 21.991057063663508 19 23.366544828113856 26.105462743810794 29.11878271685987 21.40920971121548 20 24.102591250027146 24.821018010120575 29.061575135293083 22.014815604559193 21 23.678282701688847 25.2936726273625 28.36341072661207 22.664633944336583 22 23.534869679076884 25.208291771211982 27.62031979669692 23.63651875301422 23 22.560103961207524 25.641541494872982 27.99355029880395 23.804804245115545 24 22.647250704953777 26.608846639366675 27.709433204334445 23.034469451345114 25 23.54548933955613 24.87103973412371 27.543627731737967 24.03984319458219 26 23.611260322119296 25.078770556691754 28.01358739266295 23.296381728526004 27 23.428585001286322 25.04495344867262 27.525175843775585 24.001285706265474 28 22.886795659470597 25.107046589965186 28.40054865791944 23.605609092644784 29 23.174697585221946 24.667765683818637 28.830755800066722 23.326780930892696 30 22.98836237034394 25.689972154229224 28.6700211388006 22.65164433662624 31 24.444313261621154 24.562507340480863 27.572178516546803 23.42100088135118 32 22.279973654374736 25.455735580430684 28.5310944445757 23.733196320618884 33 23.305148522962295 25.681341964787574 27.89325286828232 23.12025664396781 34 22.607574897335926 25.143444711174865 28.168750050890978 24.08023034059822 35 22.60507626726395 26.211820795140273 28.889439841848674 22.293663095747103 36 24.039172745639334 24.994895205194247 27.86229083450286 23.10364121466356 37 23.564779816018568 25.594139736442358 28.140177504298812 22.700902943240266 38 23.853093208108266 25.443990491378727 27.739926645451657 22.96298965506135 39 23.70272473173913 24.802840707430747 27.850622914432982 23.643811646397136 40 23.36199739552241 25.76288023999943 27.839749042140276 23.035373322337886 41 22.814599317964397 25.5397433130613 27.802162045707025 23.84349532326728 42 24.000107099764296 25.863686183871295 27.760629065518778 22.37557765084564 43 24.201973255835114 24.614828937096338 27.258937469560184 23.924260337508365 44 23.393300381341113 25.73118968505731 27.753635278359763 23.121874655241818 45 24.543230563498597 24.915440928021326 27.340918698493205 23.200409809986873 46 22.88171140551649 25.28266897694606 28.756492034511883 23.079127583025564 47 24.153707479589407 25.577773712440617 27.64796958914054 22.62054921882943 48 24.174955268036907 25.639466512952865 27.22848791381421 22.957090305196022 49 23.329212623682977 25.92221235225899 28.27846867520418 22.47010634885385 50 23.695879601519383 25.9659657857523 26.878001687875262 23.460152924853052 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2366.0 1 2846.0 2 3326.0 3 9511.5 4 15697.0 5 17076.0 6 18455.0 7 15985.5 8 13516.0 9 17561.5 10 21607.0 11 30194.0 12 38781.0 13 70974.0 14 103167.0 15 122560.5 16 141954.0 17 130796.0 18 119638.0 19 104451.0 20 89264.0 21 100679.5 22 112095.0 23 130344.5 24 148594.0 25 181399.0 26 214204.0 27 240364.0 28 266524.0 29 308011.0 30 349498.0 31 390018.0 32 430538.0 33 466069.5 34 501601.0 35 555049.0 36 608497.0 37 651767.0 38 695037.0 39 737552.0 40 780067.0 41 810734.0 42 841401.0 43 870906.0 44 900411.0 45 965831.0 46 1031251.0 47 1148370.5 48 1265490.0 49 1319155.0 50 1372820.0 51 1231391.0 52 1089962.0 53 982465.0 54 874968.0 55 858579.0 56 842190.0 57 801291.5 58 760393.0 59 726474.5 60 692556.0 61 609230.0 62 525904.0 63 469413.0 64 412922.0 65 360049.0 66 307176.0 67 261158.0 68 215140.0 69 184429.5 70 153719.0 71 128393.5 72 103068.0 73 83321.0 74 63574.0 75 50540.5 76 37507.0 77 29196.5 78 20886.0 79 17242.0 80 13598.0 81 11030.0 82 8462.0 83 7233.0 84 6004.0 85 4649.5 86 3295.0 87 2919.5 88 2544.0 89 1359.5 90 175.0 91 116.0 92 57.0 93 31.0 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03251559348972959 2 0.0 3 9.864419716262298E-5 4 0.002688054372681476 5 0.024987808193756934 6 0.06873650963538022 7 0.05591276400423923 8 0.07831732728479998 9 0.0916157981147861 10 0.08648013460000703 11 0.07956887553630075 12 0.07786109787292284 13 0.06969212529539313 14 0.08894007426674994 15 0.07417427100396981 16 0.06647385836296256 17 0.06581417529443752 18 0.07557378555121452 19 0.07811387362815207 20 0.0748092930232042 21 0.06442082600951547 22 0.056942362812124114 23 0.06650468467457588 24 0.05498180939351698 25 0.06329258300446797 26 0.08815708595177162 27 0.06732466456349018 28 0.05823090263756088 29 0.05586960716798059 30 0.06108541909295428 31 0.05202248347863829 32 0.05702251122231874 33 0.054340622111959926 34 0.05416799476692534 35 0.059266666707768416 36 0.059556434036933614 37 0.05570314508526866 38 0.08103620796909478 39 0.04865625025046379 40 0.08141228897077728 41 0.07011136313333427 42 0.06611627314824804 43 0.059463955102093666 44 0.07951955343771945 45 0.010246665980267461 46 0.008514227267598895 47 0.009204736647737256 48 0.0170099587482298 49 0.05616553975946846 50 0.0043280141505100825 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1.621991E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.27292660611651 #Duplication Level Percentage of deduplicated Percentage of total 1 66.98279326707556 22.287135642480806 2 14.577830725370083 9.70094183603258 3 6.602481529493617 6.590516500472431 4 3.521074080009596 4.686257577554341 5 2.060875527554532 3.4285680086331793 6 1.3258340854282638 2.646862812980534 7 0.8832189429410822 2.0571095345927306 8 0.6503690553535407 1.7311745476534148 9 0.4933076744313018 1.477241104102805 >10 2.5174761836940194 15.086930245600898 >50 0.19853295444048016 4.5946216214073115 >100 0.1593185432874772 10.766141290195828 >500 0.017126855235070567 3.872768561535155 >1k 0.008682327968128171 4.880099565825857 >5k 6.692572037783674E-4 1.5586588668061572 >10k+ 4.0899051342011347E-4 4.634972284125808 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 102465 0.6317236038917602 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 91277 0.5627466490257961 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 80374 0.4955267939217912 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 54619 0.33674046280158154 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 42759 0.2636204516547872 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 40398 0.24906426731097767 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 38093 0.2348533376572373 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 36337 0.22402713701863944 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 33351 0.20561766372316492 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 32625 0.2011416832769109 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 24116 0.14868146617336347 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 23693 0.14607356021087664 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 22641 0.13958770424743416 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 22610 0.13939658111543157 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT 16562 0.1021090745879601 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.932209858131149E-5 0.0 0.0 0.0 0.0 2 3.7608100168250007E-4 0.0 0.0 0.0 0.0 3 5.73369396007746E-4 0.0 0.0 0.0 0.0 4 5.7953465833041E-4 0.0 0.0 3.699157393598362E-5 0.0 5 6.350220192343854E-4 6.165262322663936E-6 0.0 4.315683625864755E-5 0.0 6 6.350220192343854E-4 6.165262322663936E-6 0.0 4.315683625864755E-5 0.0 7 7.891535773009838E-4 6.165262322663936E-6 0.0 5.5487360903975426E-5 0.0 8 0.0014488366458260248 6.165262322663936E-6 0.0 6.78178855493033E-5 0.0 9 0.0014488366458260248 6.165262322663936E-6 0.0 8.63136725172951E-5 0.0 10 0.014395887523420291 6.165262322663936E-6 0.0 1.541315580665984E-4 0.0 11 0.014445209622001602 1.849578696799181E-5 0.0 1.726273450345902E-4 6.165262322663936E-6 12 0.01570908839814771 2.4661049290655745E-5 0.0 1.7879260735725414E-4 6.165262322663936E-6 13 0.01574607997208369 2.4661049290655745E-5 0.0 1.9728839432524596E-4 6.165262322663936E-6 14 0.01580773259531033 3.082631161331968E-5 0.0 2.219494436159017E-4 6.165262322663936E-6 15 0.015955698891054266 3.082631161331968E-5 0.0 2.589410175518853E-4 6.165262322663936E-6 16 0.015980359940344923 3.082631161331968E-5 0.0 2.8360206684254104E-4 6.165262322663936E-6 17 0.018150532277922626 3.082631161331968E-5 0.0 3.6991573935983617E-4 6.165262322663936E-6 18 0.018427969082442503 3.699157393598362E-5 0.0 3.945767886504919E-4 6.165262322663936E-6 19 0.01867457957534906 3.699157393598362E-5 0.0 4.1923783794114766E-4 6.165262322663936E-6 20 0.018995173216127585 3.699157393598362E-5 0.0 4.438988872318034E-4 6.165262322663936E-6 21 0.019808987842719224 3.699157393598362E-5 0.0 5.240472974264345E-4 6.165262322663936E-6 22 0.022379902231270087 3.699157393598362E-5 0.0 0.0013008703500820905 6.165262322663936E-6 23 0.025222088162018163 4.315683625864755E-5 0.0 0.002817524881457419 6.165262322663936E-6 24 0.027250459466174597 4.315683625864755E-5 0.0 0.003662165819662378 6.165262322663936E-6 25 0.027262789990819925 4.315683625864755E-5 0.0 0.003742314229857009 6.165262322663936E-6 26 0.027441582598177177 4.315683625864755E-5 0.0 0.003958098411150247 6.165262322663936E-6 27 0.027453913122822506 4.315683625864755E-5 0.0 0.0042170394287021325 6.165262322663936E-6 28 0.027515565746049145 4.932209858131149E-5 0.0 0.00518498561336037 6.165262322663936E-6 29 0.02758338363159845 4.932209858131149E-5 0.0 0.006935920112996928 6.165262322663936E-6 30 0.027589548893921113 4.932209858131149E-5 0.0 0.009728783945163692 6.165262322663936E-6 31 0.028101265666702218 4.932209858131149E-5 0.0 0.01344027186340738 6.165262322663936E-6 32 0.028403363520512752 4.932209858131149E-5 0.0 0.017046950322165782 6.165262322663936E-6 33 0.029426797066074966 4.932209858131149E-5 0.0 0.021504434981451808 6.165262322663936E-6 34 0.0303269253651839 4.932209858131149E-5 0.0 0.02704084054720402 6.165262322663936E-6 35 0.030536544284154473 4.932209858131149E-5 0.0 0.03464877425337132 6.165262322663936E-6 36 0.030616692694349107 4.932209858131149E-5 0.0 0.04286090366715968 6.165262322663936E-6 37 0.030746163203125048 4.932209858131149E-5 0.0 0.05506812306603427 6.165262322663936E-6 38 0.030776989514738368 5.5487360903975426E-5 0.0 0.06833576758440707 6.165262322663936E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCGACG 1625 0.0 17.59954 22 GTACTAG 2220 0.0 17.444485 1 AATGCGA 1800 0.0 16.132862 20 TCGACGA 1425 0.0 15.592335 37 CGACGAA 1425 0.0 15.438098 38 TAGGTCG 1755 0.0 15.418496 21 GTCGACG 1470 0.0 15.264813 36 CAATGCG 1875 0.0 15.134998 19 CGACGAG 2135 0.0 14.941247 24 CTAACGC 1285 0.0 14.552598 3 AGTCGAC 1575 0.0 14.526516 35 TCTAACG 1200 0.0 14.298348 2 TCTAGAC 2800 0.0 14.221497 3 CATTGCG 1880 0.0 14.040151 29 CGCGAAT 755 0.0 13.986304 35 GTCGTCA 2115 0.0 13.522273 24 CTAGACA 3285 0.0 13.394858 4 GTATTAG 2580 0.0 13.389934 1 CTAGTAC 2930 0.0 13.290166 3 ACGCGAA 795 0.0 13.282263 34 >>END_MODULE