##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558164_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 30904806 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.635707727788358 33.0 32.0 34.0 27.0 34.0 2 31.678995364022022 33.0 32.0 34.0 27.0 34.0 3 31.70154680796249 33.0 32.0 34.0 27.0 34.0 4 31.556450119764545 33.0 32.0 34.0 27.0 34.0 5 31.61838838270009 33.0 32.0 34.0 27.0 34.0 6 34.91142351775319 38.0 36.0 38.0 26.0 38.0 7 34.97791641209461 38.0 36.0 38.0 26.0 38.0 8 35.05248678797725 38.0 36.0 38.0 26.0 38.0 9 35.198618719690394 38.0 36.0 38.0 28.0 38.0 10 35.120538274856024 38.0 36.0 38.0 27.0 38.0 11 35.14687236671215 38.0 36.0 38.0 28.0 38.0 12 35.081202062876564 38.0 36.0 38.0 27.0 38.0 13 35.12846765645447 38.0 36.0 38.0 27.0 38.0 14 35.145324452125664 38.0 36.0 38.0 27.0 38.0 15 35.13097568061097 38.0 36.0 38.0 27.0 38.0 16 35.12972603678535 38.0 36.0 38.0 27.0 38.0 17 35.06962260174033 38.0 36.0 38.0 27.0 38.0 18 35.07628040117773 38.0 36.0 38.0 27.0 38.0 19 35.09555452313792 38.0 36.0 38.0 27.0 38.0 20 35.05688335335287 38.0 36.0 38.0 27.0 38.0 21 35.03490573602048 38.0 36.0 38.0 26.0 38.0 22 35.05475070770546 38.0 36.0 38.0 27.0 38.0 23 35.055050143333695 38.0 36.0 38.0 27.0 38.0 24 35.055741750975564 38.0 36.0 38.0 27.0 38.0 25 35.06734214736698 38.0 36.0 38.0 27.0 38.0 26 35.04630655180298 38.0 36.0 38.0 27.0 38.0 27 35.04250581608569 38.0 36.0 38.0 27.0 38.0 28 35.06487751451991 38.0 36.0 38.0 27.0 38.0 29 35.06076805659288 38.0 36.0 38.0 27.0 38.0 30 35.04882936330356 38.0 36.0 38.0 27.0 38.0 31 35.08015332631436 38.0 36.0 38.0 27.0 38.0 32 35.096692922129975 38.0 36.0 38.0 27.0 38.0 33 35.05879425355396 38.0 36.0 38.0 27.0 38.0 34 35.0362732903096 38.0 36.0 38.0 27.0 38.0 35 35.01155066302633 38.0 36.0 38.0 25.0 38.0 36 34.98788880926805 38.0 36.0 38.0 25.0 38.0 37 34.97881462190703 38.0 36.0 38.0 25.0 38.0 38 34.937655165995864 38.0 36.0 38.0 25.0 38.0 39 34.94121966013959 38.0 36.0 38.0 25.0 38.0 40 34.83828049268453 38.0 36.0 38.0 25.0 38.0 41 34.87730934146618 38.0 36.0 38.0 25.0 38.0 42 34.75150470124291 38.0 36.0 38.0 25.0 38.0 43 34.82126543683853 38.0 36.0 38.0 25.0 38.0 44 34.809687172927084 38.0 36.0 38.0 25.0 38.0 45 34.80333405102106 38.0 36.0 38.0 25.0 38.0 46 34.759690127160155 38.0 36.0 38.0 25.0 38.0 47 34.67028759216285 38.0 36.0 38.0 25.0 38.0 48 34.60874690493122 38.0 36.0 38.0 24.0 38.0 49 34.53206478629893 38.0 36.0 38.0 24.0 38.0 50 34.17332313944957 38.0 35.0 38.0 16.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 87.0 4 1815.0 5 3925.0 6 5865.0 7 3032.0 8 1052.0 9 807.0 10 752.0 11 709.0 12 701.0 13 695.0 14 730.0 15 995.0 16 2257.0 17 8185.0 18 44691.0 19 134188.0 20 237249.0 21 303540.0 22 340028.0 23 368066.0 24 400744.0 25 437721.0 26 479613.0 27 529231.0 28 592315.0 29 669826.0 30 759257.0 31 858177.0 32 994760.0 33 1191133.0 34 1509708.0 35 2123587.0 36 4053845.0 37 1.484552E7 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.286934278510856 18.153989429158234 13.593460853407159 23.96561543892376 2 13.813916191546388 21.58608276007298 38.73403379396719 25.86596725441344 3 18.411470646868942 28.523789586983057 29.13912519821784 23.925614567930165 4 12.386325188784966 18.2382740533053 35.80849421678993 33.5669065411198 5 12.813681256153323 38.08721895952831 34.375005360565126 14.724094423753249 6 30.546695802499773 34.85672910423374 19.357696578473824 15.238878514792662 7 25.52674643116941 32.2626863154972 23.93296728016704 18.277599973166346 8 28.11554830440248 31.929174096112035 21.324152233626453 18.63112536585903 9 28.0002061193746 14.286456441314666 20.122714873294235 37.5906225660165 10 16.716537373979587 28.83674344556534 31.880726925353088 22.56599225510199 11 31.6263548412388 24.32363794835627 22.07929942779535 21.970707782609576 12 23.736674050181996 26.499086775735435 30.332212852498092 19.432026321584477 13 30.047031528972845 21.19947366549769 24.966082471549527 23.78741233397994 14 23.48907303229046 21.26171186083977 27.05083187433367 28.198383232536102 15 26.923229992544584 24.9295705458853 25.48861187696564 22.65858758460448 16 21.644317006457467 26.512340751041446 28.92837195561116 22.914970286889925 17 23.108590688396653 26.527477491887907 28.066213411082646 22.297718408632793 18 24.352141233847348 23.88924745978043 30.68515875637619 21.073452549996027 19 22.748303700142916 27.09013313789016 30.59100510616018 19.570558055806746 20 24.075220899923146 24.143907756572823 30.73692308917867 21.043948254325368 21 22.734227969695343 25.762670067539865 29.42897340495268 22.07412855781211 22 22.918020698071842 25.44817643577729 27.319548476110434 24.314254390040432 23 20.996393978813046 26.621111585512786 28.502012055299968 23.8804823803742 24 21.63598168338718 28.730329528407278 27.646520518611318 21.987168269594225 25 22.936950602070986 24.34181365981624 27.351470814364998 25.369764923747777 26 23.332307415571734 24.807727865073993 28.79850153607515 23.061463183279123 27 23.5061070757345 24.648361403092256 27.22282201861741 24.622709502555832 28 22.393498746044184 24.969966026845235 29.319409851570576 23.31712537554001 29 23.180971710699147 23.567030119743507 30.566417360480713 22.685580809076633 30 22.589558430583402 26.086432694479228 30.284368729201894 21.039640145735472 31 25.596237301303066 23.59460998255029 27.446791138118844 23.362361578027805 32 20.36414499984103 25.521762855710318 30.259629572574227 23.85446257187443 33 22.71844831190566 26.368115133751242 28.459407537732222 22.45402901661088 34 20.713193994687483 25.2980536957687 29.51452602210143 24.474226287442388 35 21.05744444369616 27.39703039207103 30.473526929725814 21.071998234506996 36 24.001596489820486 25.008413399039764 28.503909535092763 22.486080576046994 37 22.974904011803172 26.318919428192345 28.94395338303556 21.76222317696892 38 24.12042208275773 25.671662005022316 27.83704592201412 22.370869990205836 39 23.95741819116665 23.778269526264005 28.30938042377787 23.954931858791472 40 22.808146076658197 26.24919069829621 28.432248849619242 22.51041437542635 41 21.545932011121565 26.24443721117472 27.82941592627833 24.38021485142539 42 24.46615181099327 26.627037376739693 28.394757955599058 20.51205285666798 43 24.598264401715138 23.771714405160118 27.17044652168034 24.4595746714444 44 23.016343642905927 25.994011289383067 28.64698684071146 22.34265822699955 45 26.293609030220793 23.731612989242944 27.678260360234123 22.29651762030214 46 21.46487738323155 25.033565729967332 31.332457706533035 22.16909918026808 47 24.74317700558038 25.453753091888288 28.59293631431772 21.210133588213615 48 24.459791145715982 25.74802169541077 28.037014783246217 21.755172375627026 49 23.01295202123504 26.100269420301984 30.200236768691752 20.686541789771223 50 23.535192587403902 26.28232100179796 27.064147672827037 23.118338737971104 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5889.0 1 6104.5 2 6320.0 3 21830.5 4 37341.0 5 42655.5 6 47970.0 7 42800.5 8 37631.0 9 48869.0 10 60107.0 11 82825.0 12 105543.0 13 188048.0 14 270553.0 15 323444.5 16 376336.0 17 347350.5 18 318365.0 19 268604.0 20 218843.0 21 229719.5 22 240596.0 23 275523.0 24 310450.0 25 364994.0 26 419538.0 27 451923.5 28 484309.0 29 557368.5 30 630428.0 31 691169.0 32 751910.0 33 808596.0 34 865282.0 35 947112.0 36 1028942.0 37 1090039.5 38 1151137.0 39 1213133.0 40 1275129.0 41 1342575.0 42 1410021.0 43 1482161.0 44 1554301.0 45 1786163.5 46 2018026.0 47 2546834.0 48 3075642.0 49 3327104.0 50 3578566.0 51 2987506.0 52 2396446.0 53 1936421.0 54 1476396.0 55 1457533.5 56 1438671.0 57 1367526.0 58 1296381.0 59 1246486.0 60 1196591.0 61 1005634.5 62 814678.0 63 712281.5 64 609885.0 65 523821.0 66 437757.0 67 376755.5 68 315754.0 69 268851.5 70 221949.0 71 183778.0 72 145607.0 73 125665.5 74 105724.0 75 84119.0 76 62514.0 77 51341.5 78 40169.0 79 32695.5 80 25222.0 81 21068.5 82 16915.0 83 15107.0 84 13299.0 85 10015.5 86 6732.0 87 5601.5 88 4471.0 89 2384.0 90 297.0 91 225.5 92 154.0 93 82.5 94 11.0 95 6.5 96 2.0 97 3.5 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.032389784294390975 2 0.0 3 1.4560842090385553E-4 4 0.0027892101959805216 5 0.02548794514354822 6 0.07225413419517987 7 0.05894876026725423 8 0.08227199355336513 9 0.09543499480307367 10 0.09048107274965582 11 0.08354364042925881 12 0.08156013016227961 13 0.07294658313014486 14 0.09263284163634614 15 0.07735042892681482 16 0.0700117645132605 17 0.06883718991796939 18 0.07928540305349271 19 0.0816766168990027 20 0.07791668389699648 21 0.06786323136925694 22 0.06032718665181072 23 0.06943903805770534 24 0.058537820946036684 25 0.06684073668024319 26 0.09185302764883882 27 0.07152285634797384 28 0.06131408817127018 29 0.05917526225532689 30 0.06497694889267384 31 0.055615945299899314 32 0.060340129622557734 33 0.05784537201107168 34 0.05744737566060114 35 0.06271516475463396 36 0.06325229804063486 37 0.058877573928145674 38 0.08483146601858624 39 0.051561559713398625 40 0.08521004791293625 41 0.073820233655568 42 0.06985321312160964 43 0.0625080772226818 44 0.08317476576296903 45 0.01047086333433059 46 0.008904763873942454 47 0.009636041721148484 48 0.01736946674248659 49 0.05863489322663924 50 0.004559161445634054 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3.0904806E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.974797534771913 #Duplication Level Percentage of deduplicated Percentage of total 1 63.527725569826146 13.960089072414819 2 12.067723632525569 5.303715670606633 3 6.67122068209364 4.397961713963721 4 4.3334204782305585 3.8090415056860394 5 2.7763153809236414 3.0504484194235086 6 2.0291238228186517 2.675375110765336 7 1.484406615221779 2.283367438014227 8 1.1080821086204162 1.9479903991069427 9 0.8522565937588334 1.685534948597225 >10 4.577088615634772 17.88532520615029 >50 0.30683073642280695 4.672947501109339 >100 0.22094459257394156 9.572728591638066 >500 0.024985479783093102 3.797254144229311 >1k 0.017389587090313498 7.290610493618386 >5k 0.0011246663105348056 1.6837407183473299 >10k+ 0.0013614381653803552 15.983869066328754 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 535508 1.7327660946973749 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 459532 1.4869273083286787 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 216326 0.6999752724543878 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 215981 0.6988589412274583 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 206797 0.6691418803923248 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 177797 0.5753053424765067 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 176237 0.5702575838851731 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 158027 0.5113347095594128 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 143018 0.46276944757394695 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 120005 0.3883053011237152 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 119480 0.3866065362131702 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 118038 0.3819405952588733 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 114737 0.37125940864990387 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 114043 0.3690138032252977 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT 89863 0.29077354505962605 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 79531 0.25734185162010076 No Hit CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT 64355 0.20823622060594718 No Hit ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG 62616 0.20260926407368482 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 57193 0.18506183148342686 No Hit GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC 56476 0.18274180397702544 No Hit GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG 49183 0.1591435325625406 No Hit CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC 47620 0.15408606674314668 No Hit CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA 47276 0.15297297125890388 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 46408 0.15016434660680283 No Hit GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC 45729 0.14796727732249798 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 44234 0.14312984200580323 No Hit ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA 43327 0.14019502338891887 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 41855 0.1354320101540194 No Hit ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG 41115 0.13303756056582267 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40034 0.1295397227214434 No Hit GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG 39998 0.1294232359847203 No Hit GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG 38437 0.12437224165069989 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 38010 0.12299057952345664 No Hit GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT 36374 0.11769690448792981 No Hit AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG 36295 0.11744128081567637 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 34883 0.11287241214198206 No Hit CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC 32447 0.10499014295705335 No Hit GTACATGGGACTGCTGCTAGCTCCTCGCCCTTGCTCACTTTTTCGAACTG 31521 0.10199384522912068 No Hit TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC 31144 0.10077397023621504 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.500762567478987E-5 0.0 0.0 0.0 0.0 2 4.4653249077182365E-4 0.0 0.0 9.707228060257035E-6 0.0 3 7.798139875073153E-4 0.0 0.0 9.707228060257035E-6 0.0 4 7.927569582543246E-4 6.47148537350469E-6 0.0 1.6178713433761727E-5 0.0 5 9.09243694977409E-4 9.707228060257035E-6 0.0 1.941445612051407E-5 0.0 6 9.09243694977409E-4 9.707228060257035E-6 0.0 1.941445612051407E-5 0.0 7 0.0011292741976765685 9.707228060257035E-6 0.0 2.2650198807266417E-5 0.0 8 0.0021355901732565477 9.707228060257035E-6 0.0 2.9121684180771107E-5 6.47148537350469E-6 9 0.00215176888669031 9.707228060257035E-6 0.0 4.5300397614532835E-5 6.47148537350469E-6 10 0.02284757911115831 9.707228060257035E-6 0.0 1.0354376597607504E-4 9.707228060257035E-6 11 0.023002894760122423 9.707228060257035E-6 0.0 1.2942970747009382E-4 9.707228060257035E-6 12 0.025659439505946097 2.2650198807266417E-5 0.0 1.714943623978743E-4 9.707228060257035E-6 13 0.025720918616994392 2.2650198807266417E-5 0.0 1.8767307583163602E-4 1.6178713433761727E-5 14 0.02581475515491021 2.2650198807266417E-5 0.0 2.1032327463890244E-4 1.6178713433761727E-5 15 0.026138329423585446 2.2650198807266417E-5 0.0 2.2326624538591183E-4 2.588594149401876E-5 16 0.02619657279194699 2.2650198807266417E-5 0.0 2.847453564342064E-4 3.55931695542758E-5 17 0.029509973303181388 2.2650198807266417E-5 0.0 3.7534615166327204E-4 3.55931695542758E-5 18 0.030017984905001505 2.9121684180771107E-5 0.0 4.0446783584404316E-4 3.882891224102814E-5 19 0.030425688483532304 2.9121684180771107E-5 0.0 4.5300397614532836E-4 3.882891224102814E-5 20 0.030865749488930623 2.9121684180771107E-5 0.0 5.177188298803753E-4 4.853614030128518E-5 21 0.03231859795528243 2.9121684180771107E-5 0.0 6.697987361577355E-4 6.147911104829455E-5 22 0.03702013207913358 2.9121684180771107E-5 0.0 0.001359011928435985 6.147911104829455E-5 23 0.04217143443644331 3.55931695542758E-5 0.0 0.0031160202073425083 6.795059642179925E-5 24 0.045426591579316174 4.206465492778049E-5 0.0 0.0041870510366575344 7.11863391085516E-5 25 0.045468656234243954 4.206465492778049E-5 0.0 0.004335895200248143 7.442208179530394E-5 26 0.04581164495903971 4.206465492778049E-5 0.0 0.004769484720272957 7.442208179530394E-5 27 0.045886067040835005 4.853614030128518E-5 0.0 0.0052451388952255516 7.442208179530394E-5 28 0.046044618432485876 4.853614030128518E-5 0.0 0.007150991337722683 7.442208179530394E-5 29 0.04635848547310085 4.853614030128518E-5 0.0 0.009438661417256591 7.442208179530394E-5 30 0.04638760715728162 4.853614030128518E-5 0.0 0.013502754231817536 7.442208179530394E-5 31 0.047743383343030854 4.853614030128518E-5 0.0 0.018372546975379815 7.442208179530394E-5 32 0.048765878032044595 4.853614030128518E-5 0.0 0.023339411999544667 7.442208179530394E-5 33 0.05209869299939951 5.8243368361542215E-5 0.0 0.029393486566458304 7.442208179530394E-5 34 0.05479730240015097 5.8243368361542215E-5 0.0 0.03638269076984337 7.765782448205628E-5 35 0.0553991505398869 6.147911104829455E-5 0.0 0.04676618905163164 7.765782448205628E-5 36 0.05560623807183905 6.147911104829455E-5 0.0 0.05775153547315586 7.765782448205628E-5 37 0.055845683030658726 6.147911104829455E-5 0.0 0.07463240506994284 7.765782448205628E-5 38 0.05593304808320104 6.471485373504691E-5 0.0 0.09435425674569839 8.089356716880864E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATGCGA 3610 0.0 18.95213 20 CAATGCG 3810 0.0 18.01428 19 GTACTAG 5115 0.0 17.248503 1 CGACGAG 4320 0.0 16.75386 24 TAGGTCG 4025 0.0 16.342186 21 TGCGACG 4075 0.0 16.249533 22 CATTGCG 3990 0.0 16.042324 29 CGACGAA 3190 0.0 15.999731 38 CGTCATT 4155 0.0 15.989716 26 GTCGACG 3240 0.0 15.888545 36 TCGACGA 3260 0.0 15.790915 37 ATCGTCA 4740 0.0 14.946495 10 TCGTCAG 4650 0.0 14.666468 41 GTCGTCA 4530 0.0 14.665992 24 AGGTCGT 4700 0.0 14.275918 22 CAATTCG 3665 0.0 14.226182 15 GTATTAG 5090 0.0 14.13457 1 GACGAGT 4885 0.0 13.960464 25 AGTCGAC 3710 0.0 13.697816 35 ATTAGGT 5090 0.0 13.570601 19 >>END_MODULE