##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558163_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14383228 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.57160256376385 33.0 32.0 34.0 25.0 34.0 2 31.62130288138379 33.0 32.0 34.0 27.0 34.0 3 31.648703197919133 33.0 32.0 34.0 27.0 34.0 4 31.51247480746325 33.0 32.0 34.0 27.0 34.0 5 31.561865180750804 33.0 32.0 34.0 27.0 34.0 6 34.89664114342066 38.0 36.0 38.0 26.0 38.0 7 34.95522312515661 38.0 36.0 38.0 26.0 38.0 8 35.028047459165634 38.0 36.0 38.0 26.0 38.0 9 35.18303818864583 38.0 36.0 38.0 28.0 38.0 10 35.11892511194288 38.0 36.0 38.0 28.0 38.0 11 35.14815074891394 38.0 36.0 38.0 28.0 38.0 12 35.07195985490878 38.0 36.0 38.0 27.0 38.0 13 35.12314683463267 38.0 36.0 38.0 27.0 38.0 14 35.13007226194287 38.0 36.0 38.0 27.0 38.0 15 35.10911521391443 38.0 36.0 38.0 27.0 38.0 16 35.099562490422876 38.0 36.0 38.0 27.0 38.0 17 35.05211820322948 38.0 36.0 38.0 27.0 38.0 18 35.06342741698873 38.0 36.0 38.0 27.0 38.0 19 35.070608628327385 38.0 36.0 38.0 27.0 38.0 20 35.03577256788254 38.0 36.0 38.0 27.0 38.0 21 35.019406909213984 38.0 36.0 38.0 26.0 38.0 22 35.04788890226867 38.0 36.0 38.0 27.0 38.0 23 35.043356609517694 38.0 36.0 38.0 27.0 38.0 24 35.04813794233117 38.0 36.0 38.0 27.0 38.0 25 35.05278988833383 38.0 36.0 38.0 27.0 38.0 26 35.03774702034898 38.0 36.0 38.0 27.0 38.0 27 35.044827697927055 38.0 36.0 38.0 27.0 38.0 28 35.067025427115524 38.0 36.0 38.0 27.0 38.0 29 35.0625904699557 38.0 36.0 38.0 27.0 38.0 30 35.06536328284582 38.0 36.0 38.0 27.0 38.0 31 35.09286225595534 38.0 36.0 38.0 27.0 38.0 32 35.11046157371628 38.0 36.0 38.0 27.0 38.0 33 35.079635878677585 38.0 36.0 38.0 27.0 38.0 34 35.0578012112441 38.0 36.0 38.0 27.0 38.0 35 35.045920498513965 38.0 36.0 38.0 27.0 38.0 36 35.02363982549675 38.0 36.0 38.0 27.0 38.0 37 35.024798258082264 38.0 36.0 38.0 27.0 38.0 38 34.99019914027644 38.0 36.0 38.0 25.0 38.0 39 34.99645851404149 38.0 36.0 38.0 25.0 38.0 40 34.91533145410752 38.0 36.0 38.0 25.0 38.0 41 34.961029679846554 38.0 36.0 38.0 25.0 38.0 42 34.84067978342553 38.0 36.0 38.0 25.0 38.0 43 34.91703371454586 38.0 36.0 38.0 25.0 38.0 44 34.90150437718153 38.0 36.0 38.0 25.0 38.0 45 34.91307973425715 38.0 36.0 38.0 25.0 38.0 46 34.887722005102056 38.0 36.0 38.0 25.0 38.0 47 34.82086628954224 38.0 36.0 38.0 25.0 38.0 48 34.772738567448144 38.0 36.0 38.0 25.0 38.0 49 34.699163497929675 38.0 36.0 38.0 25.0 38.0 50 34.34458217585093 38.0 35.0 38.0 16.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 38.0 4 745.0 5 1717.0 6 2597.0 7 1305.0 8 536.0 9 359.0 10 360.0 11 336.0 12 313.0 13 319.0 14 318.0 15 427.0 16 957.0 17 3000.0 18 16118.0 19 51634.0 20 97347.0 21 132109.0 22 153458.0 23 170999.0 24 188573.0 25 207389.0 26 228440.0 27 250935.0 28 279884.0 29 315274.0 30 357415.0 31 405487.0 32 470132.0 33 561010.0 34 712035.0 35 1001924.0 36 1913729.0 37 6856009.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.71087417895413 17.994560253799186 13.472093133885247 24.82247243336144 2 14.959590434080583 20.8568479898949 38.20561698667365 25.977944589350876 3 18.23358182680804 26.481880815462027 29.44546168003689 25.839075677693042 4 12.71045901340263 17.36843773917377 36.02486100110354 33.896242246320064 5 13.88711438204532 36.77848215615725 34.0160583249221 15.318345136875328 6 31.435490365945736 35.16687923543148 18.495722789922596 14.90190760870019 7 27.136227565425404 31.302336268413583 23.03416671599935 18.527269450161665 8 27.776565538040547 31.64505833872811 21.1625190440698 19.415857079161544 9 27.67587745443052 14.015721883469448 20.107363698652346 38.201036963447685 10 16.84934256924586 27.80846325322018 31.43862361754443 23.903570559989536 11 32.84505640044939 23.360836934045494 22.667140004511648 21.126966660993478 12 24.12505975155876 25.405882684467933 29.689284936484178 20.779772627489127 13 29.604126126776737 20.697710160215664 25.272199509795634 24.425964203211965 14 23.821840808150984 20.344891270824775 26.68994092294263 29.14332699808161 15 26.06105628781995 25.699109155437444 24.731319256629707 23.508515300112904 16 22.890442721783888 26.114492147844054 27.026725047642795 23.968340082729263 17 23.311480740598146 26.084859096798308 27.209563444652822 23.394096717950724 18 24.145110065057008 24.025762580538505 29.54857386261562 22.28055349178887 19 23.59143635049204 25.7605217399775 29.1916175372654 21.456424372265065 20 24.594712368742773 24.185909330540582 29.052728460226714 22.16664984048993 21 24.019753258885597 24.954118330321865 28.253271269128028 22.772857141664506 22 23.970820052118476 24.714767505116544 27.030825867794928 24.28358657497005 23 22.435989127884827 25.356346459480168 27.602240544017626 24.605423868617386 24 22.61521877442137 26.861540464986337 27.297874717447762 23.22536604314453 25 23.860018501369584 24.04247203175774 26.991107807941116 25.10640165893156 26 24.2555076256756 24.16006229415338 27.851568452938064 23.732861627232953 27 23.763670016644603 24.42782612470734 27.088631883778874 24.719871974869182 28 22.98269361714087 24.516619765183712 28.392510455093255 24.10817616258216 29 23.38579221956935 23.857444984742468 29.019197932215736 23.737564863472453 30 23.071471052890995 25.477808124298186 28.914043131171894 22.536677691638925 31 25.12662389246701 23.71510451983925 27.215761603445383 23.942509984248357 32 22.326694928813616 24.883248208340348 28.46180227534863 24.32825458749741 33 23.52521459809656 25.242507188051906 27.870914747603585 23.361363466247948 34 22.63010573797667 24.644805071126637 27.908121307132365 24.816967883764327 35 22.737854164053562 25.954340899495428 28.921687811863922 22.386117124587095 36 24.491477174700666 24.271985483258778 27.783776022332763 23.452761319707797 37 24.05595554620921 25.2834517676523 27.881544858133072 22.77904782800542 38 24.49831075932958 24.789017131490237 27.452571908408462 23.26010020077172 39 24.450762447550474 23.740672258222304 27.37082436654688 24.437740927680345 40 23.609335499948124 25.477313621248726 27.510425030343207 23.40292584845994 41 23.004621831492045 25.27173349641587 27.239758465298692 24.48388620679339 42 24.93428938052383 25.511909728010213 27.58796874386898 21.965832147596977 43 24.96316428464693 23.758959879053634 26.73524393939436 24.542631896905075 44 23.806959928649228 25.4944295827931 27.187813591241856 23.510796897315817 45 25.761293540370882 23.983928508228384 26.77560064189734 23.47917730950339 46 22.592441503388926 24.77238367688693 29.194192707864357 23.44098211185979 47 24.690885551203632 24.93273832576942 27.55116330329324 22.825212819733707 48 24.85828664489225 25.155975436676286 26.861201644694066 23.124536273737395 49 23.595523907767674 25.4673656708688 28.23365789683657 22.703452524526956 50 24.34133569248158 25.5473700428963 26.32662457504183 23.784669689580294 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2054.0 1 2594.5 2 3135.0 3 9301.0 4 15467.0 5 17312.5 6 19158.0 7 16649.0 8 14140.0 9 18349.0 10 22558.0 11 31078.5 12 39599.0 13 70500.5 14 101402.0 15 122987.5 16 144573.0 17 130541.0 18 116509.0 19 96286.5 20 76064.0 21 80401.5 22 84739.0 23 94178.0 24 103617.0 25 123871.5 26 144126.0 27 161706.5 28 179287.0 29 212371.5 30 245456.0 31 272062.5 32 298669.0 33 325856.0 34 353043.0 35 395572.0 36 438101.0 37 478961.5 38 519822.0 39 570532.0 40 621242.0 41 650813.0 42 680384.0 43 710391.0 44 740398.0 45 832656.0 46 924914.0 47 1120357.0 48 1315800.0 49 1383629.5 50 1451459.0 51 1265323.0 52 1079187.0 53 947184.5 54 815182.0 55 804309.5 56 793437.0 57 750877.0 58 708317.0 59 690011.0 60 671705.0 61 590648.0 62 509591.0 63 441426.0 64 373261.0 65 312724.0 66 252187.0 67 214369.5 68 176552.0 69 149177.5 70 121803.0 71 101689.0 72 81575.0 73 68210.0 74 54845.0 75 43533.0 76 32221.0 77 25821.5 78 19422.0 79 16307.5 80 13193.0 81 11325.5 82 9458.0 83 8361.0 84 7264.0 85 5627.0 86 3990.0 87 3953.0 88 3916.0 89 2079.0 90 242.0 91 198.0 92 154.0 93 80.5 94 7.0 95 4.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03209293491002159 2 0.0 3 1.390508444974939E-4 4 0.0026419660454523835 5 0.025348968951893133 6 0.06841301549276699 7 0.05589148694576766 8 0.07856372714108405 9 0.09173184211499671 10 0.08699716085985705 11 0.08019062202170472 12 0.07799361867864432 13 0.06979657139551705 14 0.08929845233629058 15 0.07430181875723586 16 0.06671659518989757 17 0.06601438842518523 18 0.07585223567338292 19 0.07868887290113179 20 0.07495535772637409 21 0.06463083252243516 22 0.057622669959761466 23 0.06657754434540007 24 0.055689863221246305 25 0.06366442915317758 26 0.08828338117145887 27 0.06813491380377201 28 0.05851259536454543 29 0.05585672423464329 30 0.061815052921360907 31 0.05272808023344968 32 0.057622669959761466 33 0.05550909712339956 34 0.05479993781646234 35 0.05957633432495126 36 0.06015339532961586 37 0.05583586660796867 38 0.08121959827098618 39 0.048848561671969604 40 0.08208866604909551 41 0.07048487307577965 42 0.06674440535879707 43 0.05973624279612338 44 0.07935631695471976 45 0.010352335372838419 46 0.008628104901069496 47 0.00930250149688234 48 0.016950297944244505 49 0.05507108696323245 50 0.004421816855020306 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1.4383228E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.218116680547848 #Duplication Level Percentage of deduplicated Percentage of total 1 68.16134072777325 18.552233250311108 2 13.444575234115113 7.318720348850983 3 6.2662618228647435 5.116675363367851 4 3.4024078448269734 3.7042853486124767 5 2.064641711689401 2.809782950614408 6 1.2922230326441935 2.1103126367880627 7 0.8878933148848132 1.6916748691089283 8 0.6453886267484663 1.4053010357710642 9 0.4918159275602454 1.2047672971517966 >10 2.815582296925982 14.273731218760396 >50 0.2630404716148278 4.987607718963045 >100 0.21440498880583017 11.891861938615198 >500 0.02867471942170989 5.462384076503627 >1k 0.019949698208756996 10.005207075137331 >5k 9.254992711084567E-4 1.7510649981363586 >10k+ 8.740826449357647E-4 7.714389873307185 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 141682 0.9850500875046964 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 124298 0.8641870934674747 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 84859 0.5899857806606417 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 56226 0.39091363913580457 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 55870 0.3884385341037492 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 52841 0.3673792837046037 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 48797 0.33926320294721046 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 46875 0.3259004167910013 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 44082 0.30648196635692626 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43723 0.3039860036981963 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 32500 0.22595762230842756 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 32174 0.22369109354311842 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 31598 0.21968642922159057 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 30408 0.21141290397398968 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT 22435 0.15598028481506376 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 21767 0.15133598660884748 No Hit CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT 17517 0.12178768215313002 No Hit ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG 16581 0.11528010263064731 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 15626 0.10864042480589198 No Hit GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC 15248 0.10601236384488934 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.1715253349248166E-5 0.0 0.0 0.0 0.0 2 3.615321956934841E-4 0.0 0.0 6.952542224874694E-6 0.0 3 6.048711735640984E-4 6.952542224874694E-6 0.0 6.952542224874694E-6 0.0 4 6.118237157889731E-4 6.952542224874694E-6 0.0 6.952542224874694E-6 0.0 5 6.952542224874694E-4 6.952542224874694E-6 0.0 1.3905084449749389E-5 0.0 6 7.230643913869682E-4 6.952542224874694E-6 0.0 1.3905084449749389E-5 0.0 7 8.899254047839609E-4 6.952542224874694E-6 0.0 2.7810168899498777E-5 0.0 8 0.0016894677606445507 6.952542224874694E-6 0.0 2.7810168899498777E-5 0.0 9 0.0016894677606445507 6.952542224874694E-6 0.0 2.7810168899498777E-5 0.0 10 0.016074277623910293 6.952542224874694E-6 0.0 1.0428813337312041E-4 0.0 11 0.016136850503934166 6.952542224874694E-6 0.0 1.251457600477445E-4 0.0 12 0.017986226735750833 6.952542224874694E-6 0.0 1.390508444974939E-4 0.0 13 0.018000131820200584 6.952542224874694E-6 0.0 1.6686101339699266E-4 0.0 14 0.018041847073549833 6.952542224874694E-6 0.0 1.7381355562186735E-4 0.0 15 0.018271280966970695 6.952542224874694E-6 0.0 1.8771864007161674E-4 0.0 16 0.018340806389219443 6.952542224874694E-6 0.0 2.0162372452136614E-4 0.0 17 0.020899341927973332 6.952542224874694E-6 0.0 2.711491467701131E-4 0.0 18 0.021198301243642942 6.952542224874694E-6 0.0 2.8505423121986246E-4 0.0 19 0.021573738523786176 6.952542224874694E-6 0.0 2.989593156696119E-4 0.0 20 0.02194917580392941 6.952542224874694E-6 0.0 3.754372801432335E-4 0.0 21 0.023318826622229723 6.952542224874694E-6 0.0 4.658203290666045E-4 0.0 22 0.026857670614690944 6.952542224874694E-6 0.0 0.0012445050582525702 0.0 23 0.030883192562893392 6.952542224874694E-6 0.0 0.003121691458968738 0.0 24 0.033504300981671155 6.952542224874694E-6 0.0 0.004081142286001446 0.0 25 0.03353906369279552 6.952542224874694E-6 0.0 0.00419238296159944 0.0 26 0.033740687417316895 6.952542224874694E-6 0.0 0.0044982948194939275 0.0 27 0.03376849758621639 6.952542224874694E-6 0.0 0.004971067690785406 0.0 28 0.033907548430713884 1.3905084449749389E-5 0.0 0.006389386304659844 0.0 29 0.0340952670707855 1.3905084449749389E-5 0.0 0.008301335416500384 0.0 30 0.03410917215523525 1.3905084449749389E-5 0.0 0.011694176022239235 0.0 31 0.03484614163107197 1.3905084449749389E-5 0.0 0.016317616601780906 0.0 32 0.03547187043131069 1.3905084449749389E-5 0.0 0.021657169030484674 0.0 33 0.03730038903645273 1.3905084449749389E-5 0.0 0.027629402801652034 0.0 34 0.03877432798812617 1.3905084449749389E-5 0.0 0.03452632468872773 0.0 35 0.03912890764159478 1.3905084449749389E-5 0.0 0.045177619377235766 0.0 36 0.0392888161127669 1.3905084449749389E-5 0.0 0.055919297114667164 0.0 37 0.03940700933058977 1.3905084449749389E-5 0.0 0.07184061880963022 0.0 38 0.03953215509063751 1.3905084449749389E-5 0.0 0.09077934383018889 6.952542224874694E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATGCGA 1365 0.0 20.790396 20 TGCGACG 1390 0.0 20.099863 22 GTACTAG 1960 0.0 18.411413 1 CAATGCG 1535 0.0 18.344112 19 TCTAGAC 4720 0.0 17.898663 3 CGACGAG 1605 0.0 17.407358 24 CTCTAGT 4465 0.0 17.094791 27 GTTCTAG 5075 0.0 17.039463 1 CTAGACA 5075 0.0 17.037388 4 GTCGACG 1205 0.0 16.796198 36 TAGACAT 5370 0.0 15.773621 5 ATCGTCA 1850 0.0 15.579394 10 TAGGCCG 2385 0.0 15.405402 5 CGACGAA 1340 0.0 15.268112 38 GCCGTAT 2245 0.0 15.190722 8 TCGACGA 1345 0.0 15.047685 37 TAGGTCG 1485 0.0 14.962324 21 AGTCGAC 1340 0.0 14.93987 35 CCTTAGG 2625 0.0 14.832828 2 CCTCTAG 5845 0.0 14.82924 26 >>END_MODULE