##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558161_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 27466011 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.703424534418193 33.0 32.0 34.0 27.0 34.0 2 31.75213324570503 33.0 32.0 34.0 27.0 34.0 3 31.773964810543475 33.0 32.0 34.0 27.0 34.0 4 31.636715757523 33.0 32.0 34.0 27.0 34.0 5 31.698668110196273 33.0 32.0 34.0 27.0 34.0 6 35.038908817155864 38.0 36.0 38.0 28.0 38.0 7 35.11560353631257 38.0 36.0 38.0 28.0 38.0 8 35.19685898327209 38.0 36.0 38.0 28.0 38.0 9 35.34182339037147 38.0 37.0 38.0 28.0 38.0 10 35.258546900021265 38.0 37.0 38.0 28.0 38.0 11 35.285600082225265 38.0 37.0 38.0 28.0 38.0 12 35.219328463823885 38.0 36.0 38.0 28.0 38.0 13 35.27070873160285 38.0 37.0 38.0 28.0 38.0 14 35.28521345891837 38.0 37.0 38.0 28.0 38.0 15 35.27504612883174 38.0 37.0 38.0 28.0 38.0 16 35.2715914225768 38.0 37.0 38.0 28.0 38.0 17 35.21170573331526 38.0 36.0 38.0 28.0 38.0 18 35.22411059254291 38.0 37.0 38.0 28.0 38.0 19 35.24516457813987 38.0 37.0 38.0 28.0 38.0 20 35.20310302795699 38.0 36.0 38.0 27.0 38.0 21 35.18064694578328 38.0 36.0 38.0 27.0 38.0 22 35.201916288462854 38.0 37.0 38.0 27.0 38.0 23 35.195871144157046 38.0 36.0 38.0 27.0 38.0 24 35.201995113160045 38.0 37.0 38.0 27.0 38.0 25 35.21011682402661 38.0 37.0 38.0 27.0 38.0 26 35.18201601972707 38.0 36.0 38.0 27.0 38.0 27 35.18226665677808 38.0 36.0 38.0 27.0 38.0 28 35.20504866906228 38.0 37.0 38.0 27.0 38.0 29 35.19807222825331 38.0 36.0 38.0 27.0 38.0 30 35.18665415229026 38.0 36.0 38.0 27.0 38.0 31 35.22025852243342 38.0 37.0 38.0 27.0 38.0 32 35.22948366983469 38.0 37.0 38.0 27.0 38.0 33 35.190020531193994 38.0 36.0 38.0 27.0 38.0 34 35.163682305377364 38.0 36.0 38.0 27.0 38.0 35 35.14090957729537 38.0 36.0 38.0 27.0 38.0 36 35.1151604796197 38.0 36.0 38.0 27.0 38.0 37 35.10087646145631 38.0 36.0 38.0 27.0 38.0 38 35.06063097404279 38.0 36.0 38.0 27.0 38.0 39 35.05841740178434 38.0 36.0 38.0 26.0 38.0 40 34.953666624541874 38.0 36.0 38.0 25.0 38.0 41 34.98531887284251 38.0 36.0 38.0 25.0 38.0 42 34.85805918449534 38.0 36.0 38.0 25.0 38.0 43 34.92302806548792 38.0 36.0 38.0 25.0 38.0 44 34.89678923524789 38.0 36.0 38.0 25.0 38.0 45 34.88468693178635 38.0 36.0 38.0 25.0 38.0 46 34.82618852078666 38.0 36.0 38.0 25.0 38.0 47 34.725349196139184 38.0 36.0 38.0 25.0 38.0 48 34.658870922319224 38.0 36.0 38.0 24.0 38.0 49 34.566202096110715 38.0 36.0 38.0 24.0 38.0 50 34.20784878444853 38.0 35.0 38.0 16.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 52.0 4 1360.0 5 3413.0 6 5184.0 7 2619.0 8 968.0 9 717.0 10 640.0 11 595.0 12 610.0 13 597.0 14 636.0 15 843.0 16 1919.0 17 6022.0 18 27652.0 19 85602.0 20 160166.0 21 222875.0 22 268807.0 23 306114.0 24 342907.0 25 381294.0 26 423027.0 27 469116.0 28 527766.0 29 598724.0 30 682018.0 31 774094.0 32 896428.0 33 1073494.0 34 1359586.0 35 1905500.0 36 3598963.0 37 1.3335703E7 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.87462139976957 18.833737564492516 13.710174089274375 23.581466946463536 2 13.805499458949463 21.52789496807527 39.57244100717793 25.09416456579734 3 18.26807734854062 28.87629528054744 29.468741326764423 23.386886044147516 4 12.13042892383664 18.285737005275635 36.57411370317599 33.00972036771173 5 12.494663414063895 38.405716005679004 34.54382136881358 14.555799211443517 6 29.749988186177678 35.734952551426744 19.449358925709838 15.065700336685738 7 24.949239916589345 32.78108135489378 24.142553949767454 18.127124778749423 8 27.865267265638177 32.1422855879398 21.294302871760504 18.69814427466152 9 27.78520563744423 14.152068517194968 20.6632260742947 37.39949977106611 10 16.69169662524103 29.036128193132647 31.922493225840796 22.349681955785524 11 31.30270673004589 24.472072294905132 22.327406473879428 21.89781450116955 12 23.414973514874827 26.732143801921026 30.633851725566792 19.219030957637354 13 29.927138064950526 21.586505057306177 25.363797768963032 23.122559108780266 14 23.199347135972328 21.399393956532677 27.83104774560168 27.57021116189331 15 26.532189191177423 25.424935100652057 25.851104479469644 22.19177122870087 16 21.227344626906085 26.795484679177793 29.15650660945362 22.820664084462503 17 22.2671316792611 26.820467034388322 28.470015489894696 22.442385796455877 18 23.53705900982907 24.240939494509618 31.36364755969783 20.858353935963482 19 22.05752596679732 26.882586201298942 31.7507086888863 19.309179143017438 20 23.73215533074555 24.250845351234087 31.343947322329036 20.673051995691324 21 22.545896640588694 25.68500989969511 29.996988831351423 21.772104628364772 22 22.747205876706296 25.424760584123806 28.3809352692797 23.447098269890194 23 20.855286254727776 26.420307197352084 29.217671549757114 23.50673499816303 24 21.342740752117493 28.39676387863605 28.76704274387047 21.493452625375987 25 22.36947615294392 24.59230185696466 28.449370277591996 24.588851712499427 26 23.03377485215107 25.00166720199338 29.397577786907608 22.566980158947942 27 22.954407650978574 24.705406909836842 28.30818204877632 24.032003390408267 28 21.767900761063107 25.153666011296544 30.25509015076306 22.823343076877286 29 22.47147979252308 23.824151865491913 31.302793358121505 22.401574983863497 30 21.971831170639028 26.22735007318559 30.941327695958304 20.859491060217074 31 24.986239210211174 23.80756518133679 28.27391865692069 22.932276951531346 32 19.991931489500665 25.82119353044475 30.795280161795713 23.391594818258877 33 22.742130691286658 26.345000099633754 28.949892674230743 21.962976534848842 34 20.365298240851423 25.57616999164975 30.225773028603385 23.832758738895443 35 20.788945359968277 27.51097552676481 31.201378456505847 20.498700656761066 36 23.483391272583166 25.122028355483316 29.269005131050857 22.12557524088266 37 22.407875384636178 26.616971018631457 29.56253906379353 21.412614532938832 38 23.470871262221863 25.78919429417268 28.806957282962415 21.93297716064305 39 23.41905327043125 24.035922088547398 29.188378049255814 23.35664659176554 40 22.100479362963817 26.309040003078373 29.433072546354843 22.15740808760297 41 21.091831024095068 26.184706998544065 28.891106554330857 23.832355423030005 42 23.489714237101833 26.72504741340757 29.21899174074926 20.566246608741338 43 23.93832455193214 24.01706972366729 28.125961090012417 23.91864463438815 44 22.538546074921168 26.22909817816642 29.29660928633009 21.935746460582326 45 25.592709379509 24.2679692425355 28.314497528722338 21.824823849233162 46 21.227383493621108 25.356914828250094 31.627117687486628 21.78858399064217 47 23.882028445130608 25.990041291318626 29.01633082575355 21.111599437797214 48 24.002121099996167 25.867311153621962 28.616103514399192 21.51446423198268 49 22.703521936062657 26.397387616972797 30.526470749597106 20.37261969736744 50 22.98600904592382 26.556462601183352 27.6863802053731 22.77114814751973 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3538.0 1 4911.5 2 6285.0 3 20711.5 4 35138.0 5 40459.0 6 45780.0 7 40280.5 8 34781.0 9 45974.5 10 57168.0 11 79297.5 12 101427.0 13 186166.0 14 270905.0 15 325397.0 16 379889.0 17 348024.0 18 316159.0 19 263365.0 20 210571.0 21 218802.5 22 227034.0 23 252986.5 24 278939.0 25 350425.5 26 421912.0 27 456693.5 28 491475.0 29 559752.0 30 628029.0 31 688914.5 32 749800.0 33 797946.0 34 846092.0 35 928005.0 36 1009918.0 37 1062576.5 38 1115235.0 39 1149261.0 40 1183287.0 41 1228018.0 42 1272749.0 43 1348744.0 44 1424739.0 45 1628810.5 46 1832882.0 47 2204193.0 48 2575504.0 49 2807408.5 50 3039313.0 51 2544742.5 52 2050172.0 53 1668798.0 54 1287424.0 55 1277506.0 56 1267588.0 57 1196241.5 58 1124895.0 59 1086679.5 60 1048464.0 61 848908.0 62 649352.0 63 560166.0 64 470980.0 65 397115.0 66 323250.0 67 275698.0 68 228146.0 69 192842.0 70 157538.0 71 129950.5 72 102363.0 73 89008.0 74 75653.0 75 60185.5 76 44718.0 77 37059.5 78 29401.0 79 24137.5 80 18874.0 81 15281.0 82 11688.0 83 10215.0 84 8742.0 85 6627.0 86 4512.0 87 3888.5 88 3265.0 89 1777.5 90 290.0 91 202.5 92 115.0 93 68.5 94 22.0 95 13.0 96 4.0 97 3.5 98 3.0 99 3.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.032582088458349485 2 0.0 3 1.8204318056961382E-4 4 0.0025194776190834555 5 0.025398664553072523 6 0.07044342915321777 7 0.05752564505999798 8 0.08038662767593008 9 0.09384325958363593 10 0.08821448444042347 11 0.08202137543744521 12 0.07983321640699845 13 0.07129175037467217 14 0.09129465505566134 15 0.0758027803891872 16 0.0679348741249685 17 0.0671338841304622 18 0.07753219060459854 19 0.08017909845008071 20 0.07613045811421251 21 0.06624915427289386 22 0.058534164280353636 23 0.06786205685274065 24 0.05686664874633597 25 0.06511684568975087 26 0.09038443915281327 27 0.06979171456677855 28 0.05964462768182827 29 0.057616666650282776 30 0.06299422220430917 31 0.053975803038890505 32 0.058570572916467556 33 0.056338723522684084 34 0.05586905211681449 35 0.06101723326332317 36 0.061377678760851 37 0.0572343759710866 38 0.08289882356779076 39 0.05032037597305265 40 0.08345951656394517 41 0.071837879916381 42 0.0677419083535647 43 0.06083519008275355 44 0.08094003894486171 45 0.010518454973312288 46 0.008687100576781973 47 0.009506294889345235 48 0.01743245497134622 49 0.057616666650282776 50 0.00460569246841123 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2.7466011E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.21877642322348 #Duplication Level Percentage of deduplicated Percentage of total 1 62.64960513363579 13.293479643338518 2 11.56555635885638 4.908139091775284 3 6.75383919109118 4.299246113825049 4 4.474274398264943 3.797545124517464 5 3.020435875266252 3.2044976768978968 6 2.1583444038765354 2.7478456410103065 7 1.5877780278705271 2.3583494888163985 8 1.2060310557823832 2.0472402665688447 9 0.9749923314229577 1.8619329865339036 >10 5.126676423687792 18.92171155506352 >50 0.2582202633763177 3.7695464681135307 >100 0.1745552836343788 7.390092168042768 >500 0.024137336422695912 3.5971255611376103 >1k 0.021927254011298178 9.432784716488467 >5k 0.0019422412154825972 2.8403772191252306 >10k+ 0.0016844215851086995 15.530086278745397 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 430517 1.5674536793857687 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 377552 1.374615338208377 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 218077 0.7939886137815936 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 170656 0.6213352204657604 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 161497 0.5879885506490186 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 144719 0.5269021409770789 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 137751 0.5015326033328975 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 127964 0.46589947116820135 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 117770 0.4287845075136684 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 113574 0.41350744380026644 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 102113 0.37177950595009956 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 96825 0.3525266191730572 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 95899 0.34915517946890795 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 95701 0.34843428847385227 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT 62242 0.22661463290027808 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 55908 0.20355340278571943 No Hit CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT 52714 0.1919244844109325 No Hit ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG 52224 0.19014046124135028 No Hit GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC 46162 0.1680695460290903 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 39660 0.1443966508278177 No Hit GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG 39165 0.14259442334017852 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 38963 0.14185896889067728 No Hit GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC 38902 0.14163687621038235 No Hit CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC 37592 0.13686734487945848 No Hit CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA 37284 0.13574595888714966 No Hit ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA 36804 0.13399834435368135 No Hit GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG 33511 0.1220089804813666 No Hit ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG 33354 0.121437364894378 No Hit GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG 32355 0.11780014214659712 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 31422 0.11440321639716812 No Hit GTACATGGGACTGCTGCTAGCTCCTCGCCCTTGCTCACTTTTTCGAACTG 31025 0.1129577935434454 No Hit GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT 30939 0.11264467927286564 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 30366 0.11055846442353788 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 29420 0.10711420744716078 No Hit ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA 29149 0.10612753340847347 No Hit AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG 28333 0.10315658870157739 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 28003 0.10195510370981792 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.281727222784554E-5 0.0 0.0 0.0 0.0 2 8.373986306202236E-4 0.0 0.0 3.6408636113922766E-6 0.0 3 0.0011759989464797053 0.0 0.0 7.281727222784553E-6 0.0 4 0.0011796398100910976 0.0 0.0 7.281727222784553E-6 0.0 5 0.0013216334909353965 0.0 0.0 1.4563454445569106E-5 0.0 6 0.0013616829906607116 0.0 0.0 1.4563454445569106E-5 0.0 7 0.0017184876245771546 0.0 0.0 1.8204318056961384E-5 0.0 8 0.0033969257494289944 0.0 0.0 2.184518166835366E-5 0.0 9 0.00342241179470874 0.0 0.0 2.548604527974594E-5 3.6408636113922766E-6 10 0.03379449604094311 0.0 0.0 1.1650763556455285E-4 3.6408636113922766E-6 11 0.033940130585398805 0.0 0.0 1.3107109001012196E-4 3.6408636113922766E-6 12 0.037311570289548054 0.0 0.0 1.6383886251265244E-4 3.6408636113922766E-6 13 0.03736618324371894 0.0 0.0 1.7840231695822155E-4 3.6408636113922766E-6 14 0.03746084569761514 0.0 0.0 1.9296577140379066E-4 3.6408636113922766E-6 15 0.03798877092126702 0.0 0.0 2.2209268029492888E-4 3.6408636113922766E-6 16 0.03808707423877461 0.0 0.0 2.694239072430285E-4 3.6408636113922766E-6 17 0.04383235701755162 0.0 0.0 3.932132700303659E-4 3.6408636113922766E-6 18 0.044527761967327543 0.0 0.0 4.4782622420125003E-4 3.6408636113922766E-6 19 0.04512486359959588 0.0 0.0 5.024391783721342E-4 3.6408636113922766E-6 20 0.04584575459465155 0.0 0.0 5.461295417088415E-4 3.6408636113922766E-6 21 0.04820503421483374 0.0 0.0 7.318135858898476E-4 3.6408636113922766E-6 22 0.05527923221176894 0.0 0.0 0.0015437261712303253 3.6408636113922766E-6 23 0.06337287201989397 0.0 0.0 0.0037428077925112605 3.6408636113922766E-6 24 0.0686848920289153 0.0 0.0 0.0052137166915137406 3.6408636113922766E-6 25 0.06874678671030897 0.0 0.0 0.0054103233265289236 3.6408636113922766E-6 26 0.06934024747896592 0.0 0.0 0.0058217409146162505 3.6408636113922766E-6 27 0.06936937438785705 0.0 0.0 0.006422483410495976 3.6408636113922766E-6 28 0.0695295723867583 0.0 0.0 0.008221070034523761 3.6408636113922766E-6 29 0.06979171456677856 0.0 0.0 0.010671371244990763 3.6408636113922766E-6 30 0.06982084147566969 0.0 0.0 0.015204246441174149 3.6408636113922766E-6 31 0.07136820851051141 0.0 0.0 0.020658260131039777 3.6408636113922766E-6 32 0.07241313636698099 0.0 0.0 0.026836805679572473 3.6408636113922766E-6 33 0.0757627308894619 0.0 0.0 0.033969257494289945 3.6408636113922766E-6 34 0.0787737250960833 0.0 0.0 0.04251436439022761 3.6408636113922766E-6 35 0.07946184831863644 0.0 0.0 0.055362972074830964 3.6408636113922766E-6 36 0.07976039913477061 0.0 0.0 0.06938029697869123 3.6408636113922766E-6 37 0.0800443864964592 0.0 0.0 0.09070847601422719 3.6408636113922766E-6 38 0.08016089413202376 0.0 0.0 0.1132344991779112 3.6408636113922766E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAATGCG 5590 0.0 22.863981 19 CGACGAG 5885 0.0 22.279503 24 AATGCGA 6290 0.0 21.124693 20 ATCGTCA 6240 0.0 20.873451 10 GTACTAG 7320 0.0 20.409504 1 TGCGACG 6365 0.0 20.392014 22 GTCGTCA 5790 0.0 20.099386 24 CATTGCG 5680 0.0 19.943388 29 GACGAGT 6665 0.0 19.77117 25 AGGTCGT 5880 0.0 19.267988 22 CGTCATT 6255 0.0 18.464573 26 GTCGACG 5250 0.0 18.437777 36 TCGACGA 5295 0.0 18.364012 37 CGACGAA 5255 0.0 18.336472 38 GCTCGTC 6135 0.0 18.07462 39 GTCAGCG 6275 0.0 18.028555 43 TAGGCAT 9605 0.0 17.683313 5 CGTCATC 7445 0.0 17.672194 12 AATTCGT 5585 0.0 17.646355 16 AGTCGAC 5495 0.0 17.615679 35 >>END_MODULE