##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558158_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9939372 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.803605096981983 33.0 32.0 34.0 27.0 34.0 2 31.846823823476978 33.0 32.0 34.0 27.0 34.0 3 31.847207851763674 33.0 32.0 34.0 27.0 34.0 4 31.73317660310933 33.0 32.0 34.0 27.0 34.0 5 31.784308304387842 33.0 32.0 34.0 28.0 34.0 6 35.28491940939528 38.0 36.0 38.0 29.0 38.0 7 35.34286351290605 38.0 36.0 38.0 29.0 38.0 8 35.39594211787224 38.0 37.0 38.0 29.0 38.0 9 35.58782898959814 38.0 37.0 38.0 29.0 38.0 10 35.515538003809496 38.0 37.0 38.0 29.0 38.0 11 35.58264023119368 38.0 37.0 38.0 29.0 38.0 12 35.48803858030467 38.0 37.0 38.0 29.0 38.0 13 35.52571852628114 38.0 37.0 38.0 29.0 38.0 14 35.55349995955479 38.0 37.0 38.0 29.0 38.0 15 35.53160682586385 38.0 37.0 38.0 29.0 38.0 16 35.51288190038566 38.0 37.0 38.0 29.0 38.0 17 35.46794515790334 38.0 37.0 38.0 28.0 38.0 18 35.47324690131328 38.0 37.0 38.0 28.0 38.0 19 35.49402980389505 38.0 37.0 38.0 28.0 38.0 20 35.42159303424804 38.0 37.0 38.0 28.0 38.0 21 35.455911198413745 38.0 37.0 38.0 28.0 38.0 22 35.48569577635287 38.0 37.0 38.0 28.0 38.0 23 35.494603985040506 38.0 37.0 38.0 28.0 38.0 24 35.492087025216485 38.0 37.0 38.0 28.0 38.0 25 35.49522102603665 38.0 37.0 38.0 28.0 38.0 26 35.48706216046648 38.0 37.0 38.0 28.0 38.0 27 35.50146115871305 38.0 37.0 38.0 28.0 38.0 28 35.49897065931329 38.0 37.0 38.0 28.0 38.0 29 35.45951545027191 38.0 37.0 38.0 28.0 38.0 30 35.477563270596974 38.0 37.0 38.0 28.0 38.0 31 35.52526749174898 38.0 37.0 38.0 29.0 38.0 32 35.544552814805606 38.0 37.0 38.0 29.0 38.0 33 35.50484366617931 38.0 37.0 38.0 29.0 38.0 34 35.471879209269964 38.0 37.0 38.0 28.0 38.0 35 35.49155489904191 38.0 37.0 38.0 28.0 38.0 36 35.4741550069763 38.0 37.0 38.0 28.0 38.0 37 35.466094236134836 38.0 37.0 38.0 28.0 38.0 38 35.460243765903925 38.0 37.0 38.0 28.0 38.0 39 35.462346916887704 38.0 37.0 38.0 28.0 38.0 40 35.4504900309597 38.0 37.0 38.0 28.0 38.0 41 35.45091239164808 38.0 37.0 38.0 28.0 38.0 42 35.35230243922855 38.0 37.0 38.0 28.0 38.0 43 35.39065144155989 38.0 37.0 38.0 28.0 38.0 44 35.37640738267971 38.0 37.0 38.0 28.0 38.0 45 35.38643407249472 38.0 37.0 38.0 28.0 38.0 46 35.35233966492048 38.0 37.0 38.0 28.0 38.0 47 35.288405243309136 38.0 37.0 38.0 27.0 38.0 48 35.24748736640504 38.0 37.0 38.0 27.0 38.0 49 35.17109873742526 38.0 37.0 38.0 27.0 38.0 50 34.86494629640585 38.0 36.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 20.0 4 437.0 5 1281.0 6 1999.0 7 954.0 8 270.0 9 173.0 10 156.0 11 145.0 12 118.0 13 117.0 14 94.0 15 173.0 16 482.0 17 1472.0 18 7298.0 19 22665.0 20 42786.0 21 60423.0 22 75316.0 23 88922.0 24 102909.0 25 117451.0 26 133576.0 27 150577.0 28 171756.0 29 196587.0 30 225934.0 31 259818.0 32 303934.0 33 368426.0 34 475778.0 35 682230.0 36 1346841.0 37 5098254.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.48885460798701 17.142837587002525 12.711153082065238 25.657154722945236 2 16.467006164977022 19.99430145083613 37.47618058766691 26.062511796519942 3 19.158614850113267 24.651607767573243 28.89056773405805 27.299209648255445 4 14.014319901289806 16.34942941973548 34.355838900808614 35.280411778166105 5 15.313557190150837 35.70007748115799 32.947423499934594 16.038941828756577 6 33.812943483931036 33.19449978747605 17.577522919062304 15.415033809530618 7 29.34527282882844 29.40387695328624 21.82818893623396 19.42266128165136 8 28.208484029844705 31.50073085416806 20.127335154075414 20.163449961911812 9 28.58353057148578 13.092667049414889 19.295574143978364 39.02822823512096 10 17.463609907267248 27.329356075956184 29.933182680153298 25.27385133662327 11 34.53504399634462 22.536884774287742 21.723968481258527 21.20410274810911 12 25.32068361092942 23.991619112587166 28.76551747258176 21.92217980390165 13 31.363906690586994 19.84950893624382 24.019269428579165 24.767314944590023 14 25.12784934522107 19.334093054690975 25.593850707000964 29.94420689308699 15 26.674252725700942 25.31745019421365 23.250126621681197 24.758170458404212 16 24.876172906698432 24.38767026665789 25.39282470344219 25.34333212320149 17 23.8023961591059 25.61624343731308 26.265386516296687 24.315973887284333 18 25.628940158426968 23.123721855651628 27.870831776820765 23.37650620910064 19 25.36657982356007 24.4078190406976 27.60008090009714 22.62552023564519 20 26.468389106741224 23.024250587355645 27.492865001879075 23.01449530402406 21 25.519623068282332 23.23757220440665 27.290039179491764 23.952765547819254 22 25.119895778776723 23.3959513614159 25.7976316890661 25.686521170741273 23 23.893042669886565 24.006561268283697 26.468808558035967 25.631587503793767 24 24.116978553032627 25.253800808357273 26.109341953609604 24.519878685000492 25 26.142946900722464 23.10833716816538 25.401001281275192 25.347714649836966 26 25.598751852461056 23.483116004075665 26.233606688569715 24.684525454893567 27 25.390242227922684 22.954352767981163 26.01931284026841 25.636092163827744 28 24.140054234804087 23.462803661553885 26.807162456792334 25.58997964684969 29 25.045431907409217 22.959344495926054 27.078040998099567 24.917182598565166 30 24.972737164522165 23.80477142152194 27.41368329086408 23.808808123091815 31 26.598285535732835 22.74219052627425 26.101739993186918 24.55778394480599 32 23.903917821241794 23.608686557590783 27.322466143882483 25.164929477284943 33 24.951009674846787 23.826170064933194 25.99696544875903 25.22585481146099 34 23.964086437220022 23.435939294135366 26.357253493917394 26.242720774727218 35 24.324888627412133 24.429022953444385 27.429911679111648 23.816176740031835 36 25.926220089480527 22.90101525014332 26.692114610371142 24.480650050005007 37 25.581538156128953 23.711348612435305 26.91563334061159 23.791479890824153 38 25.68703225764232 23.09421873340391 26.762189679829774 24.456559329123998 39 25.857337328848146 22.48235149858987 26.332403717737535 25.327907454824448 40 25.195977753601824 24.01124742327923 25.73206452852742 25.060710294591527 41 25.039021248520875 23.41876980700251 26.63608596867084 24.90612297580577 42 26.345647337124657 23.65705567058299 25.78256603316958 24.21473095912277 43 25.902462082892697 23.066799779433836 25.17288856113997 25.857849576533496 44 25.561512195485353 23.666485927186486 26.000461479638215 24.771540397689947 45 26.34421467103919 22.761574230137224 25.640941012154588 25.253270086668994 46 24.635400174613892 23.566043524278665 27.41814432944049 24.38041197166695 47 26.031641957330407 23.453020061292357 26.25191890797533 24.263419073401906 48 25.888951392082532 23.94177676565093 25.469188217689563 24.700083624576973 49 24.75145435900783 24.091338489726848 27.117398350989504 24.039808800275818 50 25.317058647209063 23.842333335110936 25.660371359308048 25.180236658371957 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1329.0 1 1666.5 2 2004.0 3 5633.0 4 9262.0 5 10122.0 6 10982.0 7 9556.0 8 8130.0 9 10783.5 10 13437.0 11 18047.0 12 22657.0 13 42360.5 14 62064.0 15 73480.5 16 84897.0 17 76090.0 18 67283.0 19 53260.0 20 39237.0 21 39243.0 22 39249.0 23 42222.5 24 45196.0 25 55654.5 26 66113.0 27 72562.0 28 79011.0 29 93964.5 30 108918.0 31 123112.5 32 137307.0 33 152681.5 34 168056.0 35 197422.5 36 226789.0 37 246917.5 38 267046.0 39 310870.5 40 354695.0 41 380596.5 42 406498.0 43 446056.0 44 485614.0 45 535573.0 46 585532.0 47 697940.5 48 810349.0 49 886014.5 50 961680.0 51 869909.5 52 778139.0 53 696100.5 54 614062.0 55 612996.5 56 611931.0 57 603345.0 58 594759.0 59 574039.0 60 553319.0 61 500014.5 62 446710.0 63 412152.0 64 377594.0 65 341817.0 66 306040.0 67 254580.0 68 203120.0 69 178193.0 70 153266.0 71 136102.5 72 118939.0 73 85226.5 74 51514.0 75 41766.0 76 32018.0 77 21800.5 78 11583.0 79 9677.5 80 7772.0 81 6774.5 82 5777.0 83 5132.5 84 4488.0 85 3667.0 86 2846.0 87 2427.0 88 2008.0 89 1053.0 90 98.0 91 73.5 92 49.0 93 25.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04486198926853729 2 0.0 3 0.0 4 0.016037230521203955 5 0.014809788787460617 6 0.06412880008918069 7 0.06664404954357277 8 0.07201662237815427 9 0.059852876016714136 10 0.07110107157675556 11 0.06655350056321466 12 0.06333398126159279 13 0.0699742398211879 14 0.06824374819656615 15 0.06277056538380896 16 0.06610075566142408 17 0.06935045795649866 18 0.0803068845798306 19 0.06170409961514671 20 0.06331385926595764 21 0.06151294065661291 22 0.051502247828132404 23 0.05349432539601093 24 0.059289460138930314 25 0.06337422525286306 26 0.05322267845493659 27 0.05704585762561257 28 0.04821230154178755 29 0.06413886108699825 30 0.055526646955159735 31 0.055737927909328674 32 0.05157267481285538 33 0.05813244538990994 34 0.0600239129796128 35 0.0608489148006534 36 0.05399737528688935 37 0.057076040619065266 38 0.06727789240607958 39 0.06272026039472112 40 0.05753884651867341 41 0.07005472780372844 42 0.060295559920687136 43 0.04968120722315252 44 0.06143245267407237 45 0.01571527859104177 46 0.008783251094737174 47 0.014367104883487608 48 0.02114821741252868 49 0.11182799074227225 50 0.009165569011804769 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 9939372.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.131937594352827 #Duplication Level Percentage of deduplicated Percentage of total 1 71.88701460850379 17.347729503767436 2 13.836740578229845 6.678147202861842 3 5.367104893101873 3.885559210280402 4 2.455310706708232 2.370056189961176 5 1.415504767028017 1.7079436351214523 6 0.8738357156504016 1.265240937467528 7 0.5712841379608206 0.9650335216139921 8 0.4141394422610837 0.7995189740803645 9 0.3003841357680958 0.6523966096820366 >10 2.1086321289724643 10.092275868631868 >50 0.32191158713057044 5.492434365401593 >100 0.35607969539448975 18.32369620592024 >500 0.05781453865846936 9.632675046564652 >1k 0.03214226312104568 13.431020434720512 >5k 0.001176448846030829 1.9191329153040577 >10k+ 9.243526647385086E-4 5.437139378620881 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 71758 0.7219570813930699 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 61624 0.6199989295098322 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 50755 0.5106459442306818 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 33304 0.33507147131629644 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 28210 0.2838207484336032 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 28143 0.28314666157982615 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 27821 0.27990702028256914 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27025 0.27189846601978473 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 24563 0.24712828939293147 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 24095 0.24241974241430947 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 16840 0.16942720324785107 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 16785 0.1688738483678848 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 16213 0.1631189576162357 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 15184 0.15276619086195786 No Hit CTCTACCACCATGAATCTACTTCTGATCCTTACCTTTGTTGCAGCTGCTG 14755 0.14845002279822106 No Hit GTCCAGGATCGTGAATGGGGAGGACGCCGTCCCCGGCTCCTGGCCCTGGC 13691 0.13774512112032833 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 12056 0.12129538968860407 No Hit GTCTGGGAGAAGCGGGCAGGTGTGGCCAGCTTCAGCAGGGTGATGTCATT 11418 0.11487647308099547 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT 11120 0.11187829573136009 No Hit CTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTC 10680 0.10745145669163 No Hit TCTTAAGGCAGGGGTGGCAGGAGCTGCGGGCTCAGTTGGCGGCCAGGATC 10133 0.10194809088542012 No Hit GTTGTAGACCTTGGTGTAGACTCCAGGCTTGTTCTTCTGGGCACAGCCAT 10072 0.10133437001854846 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.018299345270506E-5 0.0 0.0 0.0 0.0 2 3.4207392579732403E-4 0.0 0.0 0.0 0.0 3 4.527449017905759E-4 0.0 0.0 2.0121995635136706E-5 0.0 4 4.527449017905759E-4 0.0 0.0 2.0121995635136706E-5 0.0 5 5.43293882148691E-4 0.0 0.0 2.0121995635136706E-5 0.0 6 5.43293882148691E-4 0.0 0.0 2.0121995635136706E-5 0.0 7 6.740868537770797E-4 0.0 0.0 3.018299345270506E-5 0.0 8 0.0012676857250136125 0.0 0.0 3.018299345270506E-5 0.0 9 0.0012878077206487492 0.0 0.0 6.036598690541012E-5 0.0 10 0.011620452479291448 0.0 0.0 1.2073197381082024E-4 0.0 11 0.011771367446554973 0.0 0.0 1.2073197381082024E-4 0.0 12 0.013089358160656428 0.0 0.0 1.6097596508109365E-4 0.0 13 0.013129602151926701 0.0 0.0 1.7103696289866202E-4 0.0 14 0.013169846143196974 0.0 0.0 1.8109796071623036E-4 0.0 15 0.013371066099548341 0.0 0.0 2.0121995635136706E-4 0.0 16 0.013421371088636183 0.0 0.0 2.1128095416893543E-4 0.0 17 0.015131740717622804 0.0 0.0 3.219519301621873E-4 0.0 18 0.015322899676156602 0.0 0.0 3.621959214324607E-4 0.0 19 0.015493936639055265 0.0 0.0 3.9237891488516576E-4 0.0 20 0.015675034599771494 0.0 0.0 4.4268390397300754E-4 0.0 21 0.01631893846009587 0.0 0.0 5.231718865135544E-4 0.0 22 0.018985102881751485 0.0 0.0 8.954288057635834E-4 0.0 23 0.022345476152819312 0.0 0.0 0.0018009186093447354 0.0 24 0.02430737072724514 0.0 0.0 0.00256555444347993 0.0 25 0.02430737072724514 0.0 0.0 0.0026561034238380453 0.0 26 0.024599139663954623 0.0 0.0 0.002998177349635369 0.0 27 0.02461926165958976 0.0 0.0 0.0032698242907097147 0.0 28 0.024719871637765446 0.0 0.0 0.004406717044094939 0.0 29 0.024860725607211403 0.0 0.0 0.005825317736372077 0.0 30 0.024860725607211403 0.0 0.0 0.008692702114379057 0.0 31 0.025323531506819544 0.0 0.0 0.012606430265413146 0.0 32 0.025796398404245257 0.0 0.0 0.01679180535752158 0.0 33 0.027043962133623735 0.0 0.0 0.02143998634923816 0.0 34 0.028211037880461663 1.0060997817568353E-5 0.0 0.02694335215544805 0.0 35 0.028462562825900872 1.0060997817568353E-5 0.0 0.035595810278556836 0.0 36 0.02859335579752926 1.0060997817568353E-5 0.0 0.04391625547368586 0.0 37 0.028704026773522514 1.0060997817568353E-5 0.0 0.056874820662713904 1.0060997817568353E-5 38 0.028734209766975216 1.0060997817568353E-5 0.0 0.07134253552437719 1.0060997817568353E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGAG 780 0.0 21.433163 24 TCTAAAC 1205 0.0 20.083256 3 CAATGCG 795 0.0 19.921185 19 AATGCGA 785 0.0 19.894749 20 TCTAGAC 2185 0.0 19.332066 3 CTCTAGT 2070 0.0 19.128185 27 TGCGACG 810 0.0 19.009155 22 CTAGACA 2320 0.0 18.39717 4 CCGGCTC 3875 0.0 18.392677 33 GAATCTA 4560 0.0 18.043829 13 AATCTAC 4620 0.0 17.714077 14 CGGCTCC 4095 0.0 17.673048 34 CTAAACA 1485 0.0 17.63022 4 CTCTACC 8090 0.0 17.576452 1 TAGACAT 2495 0.0 17.547329 5 GACGAGT 935 0.0 17.409544 25 GTACTAG 1165 0.0 17.193436 1 TAAACAG 1800 0.0 16.989117 5 CTTACCT 8220 0.0 16.77922 29 CCTTACC 8225 0.0 16.71536 28 >>END_MODULE