##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558144_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9327140 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.38878069804892 33.0 32.0 34.0 25.0 34.0 2 31.583443692278664 33.0 32.0 34.0 27.0 34.0 3 31.61961383661015 33.0 32.0 34.0 27.0 34.0 4 31.515566079205417 33.0 32.0 34.0 27.0 34.0 5 31.5843356055554 33.0 32.0 34.0 27.0 34.0 6 34.96961469432216 38.0 36.0 38.0 28.0 38.0 7 35.00617381105033 38.0 36.0 38.0 28.0 38.0 8 35.037173345741564 38.0 36.0 38.0 28.0 38.0 9 35.220021249815055 38.0 36.0 38.0 28.0 38.0 10 35.159943991405726 38.0 36.0 38.0 28.0 38.0 11 35.20267145127016 38.0 36.0 38.0 28.0 38.0 12 35.09831888445976 38.0 36.0 38.0 28.0 38.0 13 35.14723237777068 38.0 36.0 38.0 28.0 38.0 14 35.185225803408116 38.0 36.0 38.0 28.0 38.0 15 35.15360775114344 38.0 36.0 38.0 28.0 38.0 16 35.1203991791696 38.0 36.0 38.0 28.0 38.0 17 35.078873159403635 38.0 36.0 38.0 27.0 38.0 18 35.09920200618839 38.0 36.0 38.0 27.0 38.0 19 35.1085463496849 38.0 36.0 38.0 27.0 38.0 20 35.04771762834052 38.0 36.0 38.0 27.0 38.0 21 35.063144114916255 38.0 36.0 38.0 27.0 38.0 22 35.10168915659034 38.0 36.0 38.0 27.0 38.0 23 35.101482769637855 38.0 36.0 38.0 27.0 38.0 24 35.09324315921065 38.0 36.0 38.0 27.0 38.0 25 35.104253715501216 38.0 36.0 38.0 27.0 38.0 26 35.108202085526756 38.0 36.0 38.0 27.0 38.0 27 35.11908891685983 38.0 36.0 38.0 27.0 38.0 28 35.13591593993443 38.0 36.0 38.0 27.0 38.0 29 35.09886503258233 38.0 36.0 38.0 27.0 38.0 30 35.107042244460786 38.0 36.0 38.0 27.0 38.0 31 35.13619137270374 38.0 36.0 38.0 27.0 38.0 32 35.14945020660138 38.0 36.0 38.0 27.0 38.0 33 35.11918294353896 38.0 36.0 38.0 27.0 38.0 34 35.10126340979121 38.0 36.0 38.0 27.0 38.0 35 35.10555229148485 38.0 36.0 38.0 27.0 38.0 36 35.0841775721175 38.0 36.0 38.0 27.0 38.0 37 35.074259740928085 38.0 36.0 38.0 27.0 38.0 38 35.062636027764135 38.0 36.0 38.0 27.0 38.0 39 35.08075058378024 38.0 36.0 38.0 27.0 38.0 40 35.07297713983065 38.0 36.0 38.0 27.0 38.0 41 35.07133569347088 38.0 36.0 38.0 27.0 38.0 42 34.970202870333246 38.0 36.0 38.0 25.0 38.0 43 35.022008890184985 38.0 36.0 38.0 27.0 38.0 44 34.99585971691215 38.0 36.0 38.0 26.0 38.0 45 35.00875370156339 38.0 36.0 38.0 26.0 38.0 46 34.97754231200561 38.0 36.0 38.0 25.0 38.0 47 34.91828406135214 38.0 36.0 38.0 25.0 38.0 48 34.87572953767178 38.0 36.0 38.0 25.0 38.0 49 34.793995694285705 38.0 36.0 38.0 25.0 38.0 50 34.43659621277262 38.0 35.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 28.0 4 540.0 5 1271.0 6 1617.0 7 693.0 8 194.0 9 153.0 10 119.0 11 129.0 12 100.0 13 118.0 14 102.0 15 177.0 16 544.0 17 1812.0 18 9743.0 19 31159.0 20 58363.0 21 78441.0 22 91693.0 23 101822.0 24 113195.0 25 126179.0 26 139818.0 27 155551.0 28 175616.0 29 199314.0 30 228226.0 31 264958.0 32 311698.0 33 379609.0 34 493537.0 35 718772.0 36 1413328.0 37 4228521.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 43.15272243159383 19.060099520161454 13.751928535634361 24.03524951261035 2 15.038468383663158 21.58111704123665 38.45000718333809 24.930407391762106 3 17.8834884005172 27.25744440417963 30.345347019557977 24.513720175745192 4 12.705928272259168 17.823773137375586 36.77819215897369 32.69210643139155 5 13.7216112369206 37.49780314436389 34.20341505296741 14.577170565748096 6 30.558189526392677 36.208227722694744 18.828422168208984 14.405160582703601 7 26.11781484436443 32.28702312940846 23.5132125213071 18.08194950492001 8 27.17310233338783 32.18218517846192 21.301739280075633 19.342973208074614 9 27.058496283688143 14.75491715253286 20.427523631971685 37.759062931807314 10 16.885521587509515 27.77017309810144 31.518938656358774 23.825366658030266 11 32.83687769026416 23.482335109865605 23.106509437534914 20.57427776233532 12 23.177761466960835 25.98444016720566 29.67845758506984 21.15934078076367 13 28.67957077843078 21.012138104464515 26.298790051775228 24.00950106532948 14 23.564858939429115 21.05388508229159 26.613990578939895 28.767265399339404 15 25.40733133648962 26.600116652404264 24.945860261061515 23.0466917500446 16 23.475968259420778 26.739078917287806 26.450282429447885 23.334670393843528 17 22.71752072006504 26.87181142085565 27.213668087162564 23.19699977191675 18 23.486799377991442 24.916457701390186 29.51152285553129 22.085220065087082 19 23.492341249633522 26.460001752876394 29.132033322673756 20.915623674816324 20 24.536613990351555 24.148208858675073 29.207302093714567 22.10787505725881 21 24.375216226436347 25.620884322544136 27.301960721210705 22.70193872980881 22 23.832148071378086 25.490048851764186 27.134627301360243 23.543175775497488 23 22.044949000383053 26.007836292350532 27.75989456070949 24.187320146556925 24 22.899670898603752 27.252264549936488 27.314235890792705 22.53382866066706 25 23.59834291370542 24.68342826811053 27.143450691148136 24.574778127035916 26 23.31827448705492 25.429770305039252 27.76918688880646 23.48276831909937 27 23.839993855522394 25.08159025259295 27.120520581425485 23.957895310459172 28 22.73367236699729 25.148708008007752 28.649417224214435 23.468202400780523 29 23.11493233736858 24.838925443713347 29.130617387652247 22.915524831265827 30 23.046205279300793 25.931470158811106 28.652537943023486 22.369786618864612 31 24.549764354983783 24.811202403702527 27.17954879088121 23.459484450432484 32 22.07694066846129 25.687582433519 28.163527077667926 24.07194982035178 33 23.047918427935812 25.760404320350975 27.700994399016615 23.490682852696594 34 22.1666545984086 25.7314893035006 28.266660230262364 23.83519586782844 35 23.230193230936646 26.184080822574828 28.416191162034238 22.16953478445429 36 23.3875086283047 25.91299665379997 27.360052518016865 23.339442199878466 37 24.00655380300467 25.897894932977884 27.637051299255834 22.458499964761618 38 23.877158110608036 25.48676436069118 27.363059505985614 23.27301802271517 39 24.0350574749019 24.69002236818716 27.581537786852877 23.69338237005806 40 23.645801386527573 25.866869366970256 27.293441407265306 23.19388783923686 41 22.121639600443167 26.371922321435182 27.743541564679514 23.762896513442133 42 24.802943674684514 26.279147054362205 27.230095750311577 21.6878135206417 43 24.285767304324246 24.431001519703372 27.02804457682139 24.255186599150992 44 23.195291916617318 25.68934888391133 27.6986303133287 23.41672888614265 45 24.89070579447478 25.013838035048348 27.11727297741114 22.978183193065735 46 22.67442203329295 25.548566166067594 28.88778997248551 22.889221828153943 47 23.87270609406048 25.52008390440722 27.777615147400493 22.82959485413181 48 24.392616168591907 26.298776224526126 27.04562027358009 22.26298733330188 49 23.28900871448588 25.923135003963083 28.771552105799515 22.01630417575152 50 23.756693231760725 26.357547001795655 26.477239500476013 23.408520265967606 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1199.0 1 1363.5 2 1528.0 3 4540.5 4 7553.0 5 8657.0 6 9761.0 7 8710.0 8 7659.0 9 9866.0 10 12073.0 11 17063.5 12 22054.0 13 39652.0 14 57250.0 15 69862.5 16 82475.0 17 77485.0 18 72495.0 19 64291.5 20 56088.0 21 63025.5 22 69963.0 23 79647.5 24 89332.0 25 103861.5 26 118391.0 27 126726.0 28 135061.0 29 153259.0 30 171457.0 31 209349.0 32 247241.0 33 266109.5 34 284978.0 35 311244.0 36 337510.0 37 364250.0 38 390990.0 39 420278.5 40 449567.0 41 477762.0 42 505957.0 43 509381.0 44 512805.0 45 568874.5 46 624944.0 47 720801.5 48 816659.0 49 829494.0 50 842329.0 51 744768.5 52 647208.0 53 556971.0 54 466734.0 55 473993.5 56 481253.0 57 456008.5 58 430764.0 59 403802.0 60 376840.0 61 324660.5 62 272481.0 63 239054.5 64 205628.0 65 174208.5 66 142789.0 67 129049.5 68 115310.0 69 98730.5 70 82151.0 71 66780.5 72 51410.0 73 48992.5 74 46575.0 75 36043.5 76 25512.0 77 21610.5 78 17709.0 79 14632.5 80 11556.0 81 10202.0 82 8848.0 83 8325.0 84 7802.0 85 6305.0 86 4808.0 87 4508.5 88 4209.0 89 2181.0 90 153.0 91 106.0 92 59.0 93 38.0 94 17.0 95 8.5 96 0.0 97 2.0 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04292848611685897 2 0.0 3 0.0 4 0.014152248170393067 5 0.014055755569231297 6 0.059578820517329004 7 0.06129424453798271 8 0.06724462160962524 9 0.054990061262080336 10 0.06566857579064965 11 0.06215195654830955 12 0.058388745103000496 13 0.0651861127848408 14 0.06321337516108903 15 0.05820648130080604 16 0.061079816535400996 17 0.06413541557219041 18 0.07516773630501955 19 0.05702712728660661 20 0.05821720270093512 21 0.056984241686090266 22 0.04767806637404392 23 0.04952214719624665 24 0.054561205256916906 25 0.05872110850700215 26 0.049339883394052195 27 0.05304948783871583 28 0.044729681338545366 29 0.059235735713198255 30 0.05153777042051476 31 0.052052397626710864 32 0.047988986977787404 33 0.053896478448913605 34 0.05537603166672742 35 0.056705485282734044 36 0.04958647559702116 37 0.052738567234972354 38 0.062098349547664126 39 0.05809926729951518 40 0.053639164845815546 41 0.06553991898910062 42 0.05560118106943822 43 0.04575893575093759 44 0.05682342068415398 45 0.014945631779945406 46 0.008373413500815899 47 0.013819884766391413 48 0.02037066024526275 49 0.10608825427730258 50 0.007944557495652474 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 9327140.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.287662842520795 #Duplication Level Percentage of deduplicated Percentage of total 1 70.46866681905198 23.457372220345345 2 14.761840994250278 9.827743719030103 3 5.917757453949974 5.909649447327032 4 2.8452039840538936 3.788407637575317 5 1.5821147084931935 2.6332450497257245 6 0.9985681193161909 1.9943999328652464 7 0.6311255902340287 1.4706087101298098 8 0.46121079816453237 1.2282103638904691 9 0.3172837036006948 0.9505469655797606 >10 1.684654262857254 10.281239096677986 >50 0.15010053609842794 3.486936542812696 >100 0.13814566944658382 9.80338366332405 >500 0.023075887122782364 5.41182573123439 >1k 0.018531396301172776 12.073164995620044 >5k 0.0011034456605632562 2.4169621804562014 >10k+ 6.16631398550055E-4 5.266303743406082 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 63830 0.6843469702395375 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 50469 0.5410983431148241 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44461 0.47668417113927747 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 39335 0.4217262740775844 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 34479 0.36966315505074443 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29358 0.31475886498969674 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 28650 0.3071681136983041 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24591 0.2636499505743454 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 24071 0.25807482250722086 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 23958 0.2568633042926342 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 17449 0.18707771085241565 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 16500 0.17690310212991336 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 16013 0.17168178026704864 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 15906 0.17053459045323646 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 13656 0.14641144016279373 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 13206 0.1415868101047052 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT 11059 0.11856796402755829 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 10323 0.11067701353255124 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 10159 0.1089187039113812 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 9901 0.1061525826780771 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.432840077451394E-5 0.0 0.0 0.0 0.0 2 6.432840077451394E-5 0.0 0.0 0.0 0.0 3 7.50498009035996E-5 0.0 0.0 0.0 0.0 4 7.50498009035996E-5 0.0 0.0 0.0 0.0 5 8.577120103268527E-5 0.0 0.0 0.0 0.0 6 1.1793540141994224E-4 0.0 0.0 0.0 0.0 7 1.1793540141994224E-4 0.0 0.0 0.0 0.0 8 1.3937820167811356E-4 0.0 0.0 1.0721400129085658E-5 0.0 9 1.500996018071992E-4 0.0 0.0 3.216420038725697E-5 0.0 10 4.39577405292512E-4 0.0 0.0 6.432840077451394E-5 0.0 11 5.575128067124542E-4 0.0 0.0 6.432840077451394E-5 0.0 12 6.003984072287968E-4 0.0 0.0 6.432840077451394E-5 0.0 13 6.111198073578825E-4 0.0 0.0 6.432840077451394E-5 0.0 14 6.111198073578825E-4 0.0 0.0 7.50498009035996E-5 0.0 15 6.218412074869682E-4 0.0 0.0 8.577120103268527E-5 1.0721400129085658E-5 16 6.968910083905677E-4 0.0 0.0 8.577120103268527E-5 2.1442800258171316E-5 17 7.397766089069104E-4 0.0 0.0 1.0721400129085658E-4 2.1442800258171316E-5 18 7.933836095523387E-4 0.0 0.0 1.0721400129085658E-4 2.1442800258171316E-5 19 8.1482640981051E-4 0.0 0.0 1.1793540141994224E-4 2.1442800258171316E-5 20 8.362692100686813E-4 0.0 0.0 1.3937820167811356E-4 3.216420038725697E-5 21 9.220404111013665E-4 0.0 0.0 1.8226380219445618E-4 3.216420038725697E-5 22 9.863688118758806E-4 0.0 0.0 2.4659220296897015E-4 3.216420038725697E-5 23 0.0010935828131667371 0.0 0.0 4.610202055506833E-4 3.216420038725697E-5 24 0.0011793540141994223 0.0 0.0 8.255478099395956E-4 3.216420038725697E-5 25 0.0012007968144575937 0.0 0.0 8.898762107141096E-4 3.216420038725697E-5 26 0.0013187322158775359 0.0 0.0 0.0010935828131667371 3.216420038725697E-5 27 0.0013616178163938786 0.0 0.0 0.0013616178163938786 3.216420038725697E-5 28 0.0013723392165229643 0.0 0.0 0.0026160216314969004 3.216420038725697E-5 29 0.0013723392165229643 0.0 0.0 0.004299281451763348 3.216420038725697E-5 30 0.00138306061665205 0.0 0.0 0.007247666487261904 3.216420038725697E-5 31 0.0013937820167811354 0.0 0.0 0.011193141734765426 3.216420038725697E-5 32 0.0013937820167811354 0.0 0.0 0.01510645278188169 3.216420038725697E-5 33 0.0014259462171683924 0.0 0.0 0.019051928029385212 3.216420038725697E-5 34 0.0014902746179429065 0.0 0.0 0.02393016508811919 5.360700064542829E-5 35 0.0015009960180719921 0.0 0.0 0.03111350317460658 5.360700064542829E-5 36 0.0015224388183301633 0.0 0.0 0.03967990187774602 5.360700064542829E-5 37 0.0015438816185883346 0.0 0.0 0.05070150121044607 5.360700064542829E-5 38 0.0015546030187174203 0.0 0.0 0.06397459457025412 5.360700064542829E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACTAG 1370 0.0 17.991756 1 CAATGCG 1090 0.0 17.557076 19 CGACGAG 1085 0.0 17.435995 24 TGCGACG 1135 0.0 16.085503 22 AATGCGA 1135 0.0 15.892043 20 CATTGCG 950 0.0 15.051326 29 AGGTCGT 1045 0.0 14.94495 22 GACGAGT 1275 0.0 14.837531 25 ACGCGAA 535 0.0 14.802375 34 TCGACGA 1240 0.0 14.369722 37 GGCGTTA 2515 0.0 14.258896 42 GTCGACG 1240 0.0 14.192318 36 CGTCATT 1170 0.0 14.100737 26 CGACGAA 1220 0.0 14.06443 38 CGAACAA 1280 0.0 13.922759 41 TAACTCG 255 1.891749E-10 13.804132 5 CGTCGTA 2630 0.0 13.718178 10 CCGTCGT 2630 0.0 13.63453 9 CGCGAAT 565 0.0 13.627576 35 AATTCGT 1285 0.0 13.5253525 16 >>END_MODULE