##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558138_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10127224 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69494749992693 33.0 32.0 34.0 27.0 34.0 2 31.78213654600708 33.0 32.0 34.0 27.0 34.0 3 31.780496116211115 33.0 32.0 34.0 27.0 34.0 4 31.68318089932641 33.0 32.0 34.0 27.0 34.0 5 31.73691023324852 33.0 32.0 34.0 27.0 34.0 6 35.15393122537825 38.0 36.0 38.0 28.0 38.0 7 35.194966952444226 38.0 36.0 38.0 28.0 38.0 8 35.23315352756096 38.0 36.0 38.0 28.0 38.0 9 35.39986762413866 38.0 37.0 38.0 29.0 38.0 10 35.33724068905754 38.0 37.0 38.0 29.0 38.0 11 35.38903820039924 38.0 37.0 38.0 29.0 38.0 12 35.286450462634185 38.0 37.0 38.0 28.0 38.0 13 35.33807843096983 38.0 37.0 38.0 28.0 38.0 14 35.36642430344189 38.0 37.0 38.0 28.0 38.0 15 35.330811385232515 38.0 37.0 38.0 28.0 38.0 16 35.29957834447031 38.0 37.0 38.0 28.0 38.0 17 35.256299357059746 38.0 37.0 38.0 28.0 38.0 18 35.269561036667106 38.0 37.0 38.0 28.0 38.0 19 35.28191832233591 38.0 37.0 38.0 28.0 38.0 20 35.20596888150198 38.0 37.0 38.0 28.0 38.0 21 35.231992498635364 38.0 37.0 38.0 28.0 38.0 22 35.27068029698958 38.0 37.0 38.0 28.0 38.0 23 35.27476937411476 38.0 37.0 38.0 28.0 38.0 24 35.27334884663359 38.0 37.0 38.0 28.0 38.0 25 35.28238044305132 38.0 37.0 38.0 27.0 38.0 26 35.29215034643255 38.0 37.0 38.0 28.0 38.0 27 35.29185243656109 38.0 37.0 38.0 27.0 38.0 28 35.30182802315817 38.0 37.0 38.0 27.0 38.0 29 35.27226167802746 38.0 37.0 38.0 27.0 38.0 30 35.280338126222944 38.0 37.0 38.0 27.0 38.0 31 35.31732437240452 38.0 37.0 38.0 28.0 38.0 32 35.32699177978092 38.0 37.0 38.0 28.0 38.0 33 35.29769056159911 38.0 37.0 38.0 27.0 38.0 34 35.279930512053454 38.0 37.0 38.0 27.0 38.0 35 35.28985840542285 38.0 37.0 38.0 27.0 38.0 36 35.26962107286261 38.0 37.0 38.0 27.0 38.0 37 35.261004990113776 38.0 37.0 38.0 27.0 38.0 38 35.263363089431024 38.0 37.0 38.0 27.0 38.0 39 35.275255785790854 38.0 37.0 38.0 27.0 38.0 40 35.28402284772214 38.0 37.0 38.0 27.0 38.0 41 35.283280887240174 38.0 37.0 38.0 27.0 38.0 42 35.19346772620019 38.0 37.0 38.0 27.0 38.0 43 35.24884726554878 38.0 37.0 38.0 27.0 38.0 44 35.2289451679947 38.0 37.0 38.0 27.0 38.0 45 35.249766964767446 38.0 37.0 38.0 27.0 38.0 46 35.22567240538967 38.0 37.0 38.0 27.0 38.0 47 35.18037400969901 38.0 37.0 38.0 27.0 38.0 48 35.14509721518947 38.0 37.0 38.0 27.0 38.0 49 35.0667461290478 38.0 36.0 38.0 26.0 38.0 50 34.76036601935535 38.0 36.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 19.0 4 566.0 5 1508.0 6 2034.0 7 1058.0 8 228.0 9 186.0 10 163.0 11 116.0 12 115.0 13 133.0 14 118.0 15 233.0 16 555.0 17 1803.0 18 9723.0 19 32047.0 20 60693.0 21 81778.0 22 95882.0 23 107016.0 24 118217.0 25 130220.0 26 143609.0 27 158995.0 28 177681.0 29 200915.0 30 228107.0 31 261967.0 32 306853.0 33 370480.0 34 480019.0 35 690097.0 36 1367153.0 37 5096937.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.42053224547084 18.988085171287764 13.677395926521866 24.91398665671953 2 14.968159092758293 20.80459561277602 39.38749651434589 24.839748780119802 3 17.79459010682493 26.89399385260956 29.854351004776824 25.457065035788684 4 12.456265774911659 17.312309104866443 37.627121456190814 32.60430366403108 5 13.64167146139596 37.431745473054605 34.455378994957584 14.471204070591847 6 30.90809399900913 36.66685045455884 18.563110687147358 13.861944859284678 7 26.612764727958382 31.653117072093913 23.75155951923824 17.98255868070947 8 26.59502266914901 33.00406740267287 21.315492495661832 19.085417432516294 9 27.027008868052643 14.547866853528923 20.56059862319511 37.86452565522333 10 16.663796027925336 27.70232592886409 31.91792562209607 23.7159524211145 11 33.3051487142962 23.444056363836324 23.327615712650086 19.923179209217388 12 23.429487645031084 25.421483497411145 29.924994834742897 21.224034022814877 13 28.37015525822384 20.98572044902926 26.172341984306787 24.47178230844012 14 23.206570228142365 20.565263494800814 27.08032339675886 29.147842880297965 15 24.930924985171217 26.870390737866305 24.61304603054448 23.585638246417993 16 23.247964779999997 26.633978774444156 26.26236405969511 23.855692385860735 17 22.37163320104266 26.854133845565663 27.318615316554425 23.45561763683725 18 23.37482050719503 25.409984790671615 28.989553098740068 22.225641603393292 19 23.537429780533568 26.108722306829712 28.515429583114265 21.838418329522455 20 24.311524703019423 25.034744032449964 28.184438171333014 22.4692930931976 21 24.932350995818243 25.42150077337144 27.123925782427204 22.522222448383115 22 24.173536510990154 25.433034590898263 27.000723498567574 23.392705399544006 23 22.600975333887206 25.969788736937776 27.53073989248781 23.89849603668721 24 23.209826408547073 26.740108824421565 27.102596708392245 22.94746805863911 25 23.548082762360472 25.054725849038668 27.017297459025023 24.37989392957583 26 23.519430058340415 25.54739895649411 27.677477659589915 23.255693325575557 27 24.045202596555708 25.216458685320763 26.82880319332879 23.909535524794737 28 23.051751713568944 25.02317970069758 28.349369191058333 23.575699394675144 29 23.189213752976794 24.732121921641394 28.755453481982723 23.32321084339909 30 23.30117768573199 25.6548497617547 28.317148474438685 22.726824078074625 31 24.21758274808023 24.887845013793736 27.3689486548219 23.525623583304135 32 22.579770953299498 25.411456524084524 27.816045757174457 24.192726765441524 33 23.246826644429053 25.988999099890425 27.31082631244572 23.4533479432348 34 22.743905855068476 25.761803316153898 27.844282593279736 23.65000823549789 35 23.640709356646564 25.90520239666743 28.12308808068991 22.331000165996095 36 23.70810251120642 25.79048612696032 26.942764016547073 23.55864734528619 37 23.970149023680882 25.961804851579025 27.3362733369456 22.731772787794498 38 23.98497681196282 25.44685130733534 27.218426636366537 23.349745244335303 39 23.749317844765923 25.234215276186532 27.3182631248248 23.698203754222742 40 23.833229786416698 25.52007624530976 27.47625337219109 23.170440596082447 41 22.45586467062933 25.88894189836463 27.646864794742655 24.008328636263382 42 24.291707469669095 26.25411492371687 27.01100300243568 22.443174604178353 43 24.224890217068282 24.50317098000038 27.193771616725577 24.07816718620576 44 23.381446623810955 25.747624134354524 27.63424637623736 23.23668286559716 45 24.623115329750878 25.009826535477647 26.917527418502964 23.449530716268516 46 23.026364061268833 25.47813258573719 28.4386445109444 23.05685884204958 47 23.76048859128062 25.6687199109124 27.43002898349201 23.140762514314968 48 24.42605184528291 26.06266988125633 26.642279715719972 22.868998557740788 49 23.338019637002912 25.800513720635145 28.11023008689993 22.751236555462018 50 23.68797169753094 26.115584874078206 26.766433034689285 23.430010393701565 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1669.0 1 1752.0 2 1835.0 3 4578.0 4 7321.0 5 8198.0 6 9075.0 7 7983.0 8 6891.0 9 8950.5 10 11010.0 11 15187.5 12 19365.0 13 34336.5 14 49308.0 15 60917.0 16 72526.0 17 67608.0 18 62690.0 19 55722.5 20 48755.0 21 56903.0 22 65051.0 23 80095.5 24 95140.0 25 115859.0 26 136578.0 27 156463.5 28 176349.0 29 205483.0 30 234617.0 31 262075.0 32 289533.0 33 315984.0 34 342435.0 35 375306.0 36 408177.0 37 436976.5 38 465776.0 39 487017.5 40 508259.0 41 527681.0 42 547103.0 43 556859.5 44 566616.0 45 608161.5 46 649707.0 47 713723.5 48 777740.0 49 782897.5 50 788055.0 51 697730.5 52 607406.0 53 569651.0 54 531896.0 55 530847.0 56 529798.0 57 499961.5 58 470125.0 59 441637.0 60 413149.0 61 365156.5 62 317164.0 63 279063.5 64 240963.0 65 206203.0 66 171443.0 67 153308.5 68 135174.0 69 123910.5 70 112647.0 71 92842.0 72 73037.0 73 70165.0 74 67293.0 75 61105.5 76 54918.0 77 40971.5 78 27025.0 79 18930.0 80 10835.0 81 9571.0 82 8307.0 83 7572.5 84 6838.0 85 5348.5 86 3859.0 87 3685.5 88 3512.0 89 1837.5 90 163.0 91 121.0 92 79.0 93 44.5 94 10.0 95 5.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0432102617657119 2 0.0 3 0.0 4 0.015532390712400554 5 0.015028797625094497 6 0.06775795617831698 7 0.07028579598910817 8 0.07646715427643351 9 0.06319599526977976 10 0.07430466631329571 11 0.06958471541658405 12 0.06636566940752965 13 0.07344559575259715 14 0.07179657525102634 15 0.0662076794193552 16 0.0697624541532803 17 0.07244828395224595 18 0.08328047251645664 19 0.06549672447257017 20 0.06695813186318383 21 0.06519061887048218 22 0.055029887756012905 23 0.0569455163626281 24 0.06254428656856015 25 0.06692850874040113 26 0.0569455163626281 27 0.0604706679737705 28 0.05155410801617502 29 0.06768883555849066 30 0.05858466248993801 31 0.05887101934350421 32 0.05549398334627535 33 0.06155684914246984 34 0.06322561839256247 35 0.06422293019291368 36 0.05721212446767248 37 0.06070765295603217 38 0.07045366035154352 39 0.06642491565309507 40 0.06130011541168637 41 0.07346534450111897 42 0.06360084461447678 43 0.05363760098522557 44 0.06514124699917766 45 0.015601511332226876 46 0.008896811209073681 47 0.014416586420918507 48 0.021101537795549897 49 0.11079047920733262 50 0.008877062460551874 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1.0127224E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.18434007160526 #Duplication Level Percentage of deduplicated Percentage of total 1 71.88973788553167 27.450621990797057 2 14.649360835529501 11.187523519510277 3 5.62294508638615 6.441253421475918 4 2.6036770775051883 3.9767876385640584 5 1.4122642577819047 2.6963189345058725 6 0.827040346745881 1.8947993911849832 7 0.5796402883943258 1.54932273238766 8 0.36902399006073633 1.1272750024847868 9 0.2826992552978987 0.9715216052056066 >10 1.4664706783364627 10.227087766578896 >50 0.14141858127764875 3.792196772194355 >100 0.1261353809495399 9.966857093250068 >500 0.016351984218774138 4.322354899170689 >1k 0.012196363681686619 9.029157283663627 >5k 6.227929815756537E-4 1.5872488650102097 >10k+ 4.151953210504358E-4 3.779673084016054 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 51155 0.5051236153164973 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 41528 0.4100630143067834 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 41494 0.4097272855819126 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 31260 0.3086729393958305 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 26885 0.26547255200437947 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25389 0.25070048811006845 No Hit CTCCAGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTT 23203 0.2291151059757343 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 22077 0.21799656055795746 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20903 0.20640404517565722 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 19085 0.1884524327693354 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 17263 0.17046132286597 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 13584 0.13413349996010754 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 12915 0.12752754357956336 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 12083 0.119312064194492 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 11764 0.11616213880526391 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 10861 0.10724557884766843 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.962312278270926E-5 0.0 0.0 0.0 9.874374260903087E-6 2 2.962312278270926E-5 0.0 0.0 0.0 9.874374260903087E-6 3 2.962312278270926E-5 0.0 0.0 0.0 1.9748748521806174E-5 4 2.962312278270926E-5 0.0 0.0 0.0 1.9748748521806174E-5 5 1.2836686539174013E-4 0.0 0.0 0.0 1.9748748521806174E-5 6 1.481156139135463E-4 0.0 0.0 0.0 3.949749704361235E-5 7 1.579899881744494E-4 0.0 0.0 0.0 3.949749704361235E-5 8 1.6786436243535247E-4 0.0 0.0 0.0 6.91206198263216E-5 9 1.6786436243535247E-4 0.0 0.0 0.0 6.91206198263216E-5 10 2.468593565225772E-4 0.0 0.0 1.9748748521806174E-5 8.886936834812778E-5 11 3.752262219143173E-4 0.0 0.0 2.962312278270926E-5 8.886936834812778E-5 12 3.752262219143173E-4 0.0 0.0 3.949749704361235E-5 8.886936834812778E-5 13 3.851005961752204E-4 0.0 0.0 3.949749704361235E-5 8.886936834812778E-5 14 3.9497497043612347E-4 0.0 0.0 5.924624556541852E-5 8.886936834812778E-5 15 4.0484934469702655E-4 0.0 0.0 7.89949940872247E-5 9.874374260903087E-5 16 4.1472371895792963E-4 0.0 0.0 9.874374260903087E-5 2.27110608000771E-4 17 6.220855784368945E-4 0.0 0.0 1.1849249113083704E-4 2.27110608000771E-4 18 6.615830754805068E-4 0.0 0.0 1.2836686539174013E-4 2.468593565225772E-4 19 7.010805725241191E-4 0.0 0.0 1.481156139135463E-4 2.468593565225772E-4 20 7.307036953068284E-4 0.0 0.0 1.6786436243535247E-4 2.764824793052864E-4 21 7.800755666113439E-4 0.0 9.874374260903087E-6 1.9748748521806174E-4 3.554774733925111E-4 22 7.899499408722469E-4 0.0 9.874374260903087E-6 2.3698498226167408E-4 3.554774733925111E-4 23 8.294474379158593E-4 0.0 9.874374260903087E-6 3.159799763488988E-4 3.653518476534142E-4 24 8.491961864376654E-4 0.0 9.874374260903087E-6 5.233418358278636E-4 3.653518476534142E-4 25 8.491961864376654E-4 0.0 9.874374260903087E-6 5.628393328714759E-4 3.653518476534142E-4 26 8.886936834812778E-4 0.0 9.874374260903087E-6 6.91206198263216E-4 3.851005961752204E-4 27 9.183168062639871E-4 0.0 9.874374260903087E-6 8.985680577421809E-4 4.1472371895792963E-4 28 9.676886775685025E-4 0.0 9.874374260903087E-6 0.0016490205015708154 4.443468417406389E-4 29 0.0010664324201775334 0.0 9.874374260903087E-6 0.002468593565225772 4.54221216001542E-4 30 0.0012145480340910795 0.0 9.874374260903087E-6 0.004216357809405618 4.54221216001542E-4 31 0.001244171156873789 0.0 9.874374260903087E-6 0.0068133182400231295 4.640955902624451E-4 32 0.0012737942796564982 0.0 9.874374260903087E-6 0.009232539933944387 4.640955902624451E-4 33 0.0012737942796564982 0.0 9.874374260903087E-6 0.012461460317259695 4.7396996452334815E-4 34 0.0013034174024392075 0.0 9.874374260903087E-6 0.016164350665098352 5.035930873060574E-4 35 0.0013034174024392075 0.0 9.874374260903087E-6 0.021782869619552208 5.035930873060574E-4 36 0.0013231661509610136 0.0 9.874374260903087E-6 0.02856656473679263 5.035930873060574E-4 37 0.0013527892737437229 0.0 9.874374260903087E-6 0.03813483339560772 5.035930873060574E-4 38 0.001362663648004626 0.0 9.874374260903087E-6 0.04931262505895002 5.430905843496698E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCACT 6770 0.0 16.86409 38 CGACGAA 950 0.0 16.20909 38 GTCGACG 965 0.0 15.729098 36 CGACGAG 1000 0.0 15.618462 24 TGCGACG 965 0.0 15.499838 22 GTACTAG 1245 0.0 15.379807 1 AATGCGA 1035 0.0 15.089333 20 GCAGATC 7835 0.0 14.908846 35 ACTGTCC 7600 0.0 14.879616 42 TCGACGA 1045 0.0 14.735463 37 CAATGCG 1075 0.0 14.732559 19 AGATCAC 8190 0.0 14.477279 37 ATCAAGC 7920 0.0 14.303017 30 CCAGGAC 9260 0.0 14.136213 3 ATCACTG 8140 0.0 14.081991 39 CAAGCAG 8270 0.0 14.017689 32 AGTCGAC 1100 0.0 13.998898 35 GACAGGC 8520 0.0 13.943735 7 CGAACAA 1150 0.0 13.775007 41 TCAAGCA 8295 0.0 13.735754 31 >>END_MODULE