##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558137_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9233363 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.651195236231914 33.0 32.0 34.0 27.0 34.0 2 31.71693282285122 33.0 32.0 34.0 27.0 34.0 3 31.73057021585743 33.0 32.0 34.0 27.0 34.0 4 31.624043265709364 33.0 32.0 34.0 27.0 34.0 5 31.67616977692743 33.0 32.0 34.0 27.0 34.0 6 35.13594559208817 38.0 36.0 38.0 28.0 38.0 7 35.184301646106626 38.0 36.0 38.0 28.0 38.0 8 35.225727938996876 38.0 36.0 38.0 28.0 38.0 9 35.415958194213744 38.0 37.0 38.0 29.0 38.0 10 35.34514109322898 38.0 37.0 38.0 29.0 38.0 11 35.41098546650879 38.0 37.0 38.0 29.0 38.0 12 35.30129119801745 38.0 37.0 38.0 28.0 38.0 13 35.34643704574379 38.0 37.0 38.0 28.0 38.0 14 35.369771988819245 38.0 37.0 38.0 28.0 38.0 15 35.333278568166335 38.0 37.0 38.0 28.0 38.0 16 35.31335050945143 38.0 37.0 38.0 28.0 38.0 17 35.26684740976825 38.0 37.0 38.0 28.0 38.0 18 35.28257569858349 38.0 37.0 38.0 28.0 38.0 19 35.28772983364783 38.0 37.0 38.0 28.0 38.0 20 35.2197865501443 38.0 36.0 38.0 28.0 38.0 21 35.26168255271671 38.0 37.0 38.0 28.0 38.0 22 35.302794550587905 38.0 37.0 38.0 28.0 38.0 23 35.30607309601063 38.0 37.0 38.0 28.0 38.0 24 35.31388628390327 38.0 37.0 38.0 28.0 38.0 25 35.313432169838876 38.0 37.0 38.0 28.0 38.0 26 35.30634818537948 38.0 37.0 38.0 28.0 38.0 27 35.321396223672785 38.0 37.0 38.0 28.0 38.0 28 35.329750492859425 38.0 37.0 38.0 28.0 38.0 29 35.29505067655198 38.0 37.0 38.0 28.0 38.0 30 35.32661772314161 38.0 37.0 38.0 28.0 38.0 31 35.35881043559102 38.0 37.0 38.0 28.0 38.0 32 35.376565396594934 38.0 37.0 38.0 28.0 38.0 33 35.34586130752143 38.0 37.0 38.0 28.0 38.0 34 35.32510364858395 38.0 37.0 38.0 28.0 38.0 35 35.34754314327294 38.0 37.0 38.0 28.0 38.0 36 35.3371024186962 38.0 37.0 38.0 28.0 38.0 37 35.33474791362584 38.0 37.0 38.0 28.0 38.0 38 35.33096294383747 38.0 37.0 38.0 28.0 38.0 39 35.344107775249384 38.0 37.0 38.0 28.0 38.0 40 35.34253315936999 38.0 37.0 38.0 28.0 38.0 41 35.350166456143874 38.0 37.0 38.0 28.0 38.0 42 35.261156200617265 38.0 37.0 38.0 27.0 38.0 43 35.31330794641129 38.0 37.0 38.0 28.0 38.0 44 35.29952401957986 38.0 37.0 38.0 27.0 38.0 45 35.33517040324311 38.0 37.0 38.0 28.0 38.0 46 35.3194456884236 38.0 37.0 38.0 27.0 38.0 47 35.284290350114034 38.0 37.0 38.0 27.0 38.0 48 35.260966129025796 38.0 37.0 38.0 27.0 38.0 49 35.18880044031628 38.0 37.0 38.0 27.0 38.0 50 34.87284308003487 38.0 36.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 21.0 4 464.0 5 1272.0 6 1778.0 7 790.0 8 227.0 9 150.0 10 147.0 11 131.0 12 107.0 13 130.0 14 114.0 15 189.0 16 415.0 17 1444.0 18 7273.0 19 24237.0 20 47247.0 21 67459.0 22 82148.0 23 94735.0 24 107242.0 25 120152.0 26 132637.0 27 147513.0 28 164405.0 29 185074.0 30 211184.0 31 241749.0 32 284243.0 33 342699.0 34 441301.0 35 633277.0 36 1262787.0 37 4628622.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.5274623664349 17.852320531553858 12.853379105930465 25.76683799608078 2 16.223796248452487 20.498370961912794 37.667510743377036 25.610322046257682 3 18.295489953118924 24.72885556432689 29.965549930182533 27.010104552371654 4 13.505486970678746 16.310476642327068 35.94491690199277 34.23911948500141 5 14.954691615072942 36.07058268430923 33.48655653025011 15.488169170367716 6 32.88002762186054 35.17968189344126 17.491905151940824 14.448385332757372 7 28.99656853230438 29.964105220116032 22.306230666633287 18.733095580946298 8 27.23808289301872 31.93792474391811 20.920128201348774 19.90386416171439 9 27.623915678213695 13.773520008045178 19.904532868192593 38.69803144554854 10 16.970347508742694 26.976138219263852 30.469325003438335 25.584189268555118 11 34.46727566539944 22.586923531178265 22.77198354400762 20.173817259414665 12 24.7135245333581 24.262149367672713 29.065120981353832 21.959205117615358 13 29.689760366717778 20.04770383048233 25.35747526913605 24.905060533663846 14 24.71335155291458 19.829471308819734 25.386176260305408 30.07100087796027 15 25.362053883379833 26.787500845287287 23.282300377821745 24.56814489351114 16 25.322656751738158 24.997296066519148 24.916579046216995 24.7634681355257 17 23.387223418772166 26.216087129596204 26.145923411001487 24.250766040630147 18 24.998997392352997 23.915975192560282 27.83096837157658 23.254059043510136 19 25.14817304895552 24.7790571109409 26.88268526453544 23.190084575568147 20 25.638028213278254 23.750532372011264 26.764478622215815 23.846960792494663 21 25.752396875378953 24.177049577561924 26.674886806015298 23.395666741043826 22 25.198761422578293 23.747444372157496 25.919050799618404 25.13474340564581 23 23.68050117971936 24.242425555883283 26.145396212111528 25.931677052285828 24 23.77896096665132 25.412893676309046 26.286985202938755 24.52116015410088 25 25.579889742975638 23.869865500301817 25.551366400325982 24.998878356396563 26 25.426395934685896 24.26827856971958 25.927105041419463 24.37822045417506 27 25.293490983066246 23.839958162736423 25.917463080576287 24.949087773621045 28 23.77850438165543 23.93568399897193 26.813232560387267 25.472579058985374 29 24.244848824546132 23.710031918869955 26.62392249565617 25.42119676092774 30 24.2881426882058 24.401088869236755 27.679117981675695 23.63165046088175 31 25.834311668085856 23.692229937888655 26.075342865062623 24.39811552896286 32 24.416396032917934 24.020541689372234 26.505738056727058 25.057324220982775 33 24.507775996005208 24.192854497186502 26.124039256984222 25.175330249824068 34 24.423131106468198 23.424975509107142 25.98756816270622 26.16432522171844 35 24.432723059357368 24.34237618457681 27.09730023554992 24.127600520515905 36 24.836779570526904 23.620565096861657 26.90223548407965 24.64041984853179 37 25.548698487555953 24.18443213182331 26.521216153686943 23.745653226933793 38 25.210343132818945 23.438296728633922 27.045529053552087 24.305831084995045 39 25.829995254460712 23.388237022944068 26.243894276883957 24.53787344571126 40 25.47583367134201 24.75164083659124 25.484958009082508 24.287567482984247 41 25.177256347777384 24.07384025670185 26.259170071479115 24.48973332404165 42 26.131080964219848 24.321537813667184 25.457034755859816 24.090346466253152 43 25.28557927337355 23.699270955031356 25.485042127967862 25.530107643627233 44 25.061092978582618 24.486802724568037 25.45002903203364 25.00207526481571 45 25.322257068435817 23.912279829501603 25.370199045861497 25.395264056201082 46 24.18726368402771 24.365458206983142 26.84525616654104 24.602021942448108 47 25.363898866758127 24.106514033971475 25.92459482124215 24.604992278028245 48 25.455556418541576 24.67480682743988 25.174139927008714 24.69549682700983 49 24.0517607578498 24.89955393686334 26.86109549255271 24.18758981273415 50 25.458411403689386 24.622069796008507 25.354042001860584 24.565476798441523 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 714.0 1 1018.0 2 1322.0 3 3571.0 4 5820.0 5 6470.5 6 7121.0 7 6192.0 8 5263.0 9 6595.0 10 7927.0 11 10808.0 12 13689.0 13 25110.5 14 36532.0 15 44450.0 16 52368.0 17 47220.0 18 42072.0 19 35826.0 20 29580.0 21 32962.5 22 36345.0 23 41153.5 24 45962.0 25 55965.0 26 65968.0 27 75624.0 28 85280.0 29 102541.0 30 119802.0 31 137118.5 32 154435.0 33 172826.5 34 191218.0 35 223982.0 36 256746.0 37 284810.0 38 312874.0 39 359039.0 40 405204.0 41 423815.0 42 442426.0 43 461590.0 44 480754.0 45 536716.0 46 592678.0 47 691447.0 48 790216.0 49 812427.5 50 834639.0 51 748915.0 52 663191.0 53 604834.0 54 546477.0 55 565507.0 56 584537.0 57 566152.0 58 547767.0 59 519560.5 60 491354.0 61 441836.0 62 392318.0 63 347404.0 64 302490.0 65 258647.5 66 214805.0 67 187395.5 68 159986.0 69 136812.5 70 113639.0 71 94682.0 72 75725.0 73 62153.5 74 48582.0 75 37228.5 76 25875.0 77 20206.0 78 14537.0 79 12284.0 80 10031.0 81 9199.0 82 8367.0 83 7942.0 84 7517.0 85 6136.0 86 4755.0 87 4501.5 88 4248.0 89 2183.5 90 119.0 91 95.5 92 72.0 93 43.5 94 15.0 95 7.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.042985421454783054 2 0.0 3 0.0 4 0.01616962313731194 5 0.014046886275347347 6 0.06377957846994643 7 0.06623805432538502 8 0.07177233257264985 9 0.05929583836355183 10 0.07057017037021072 11 0.06591314562202309 12 0.06264239800817968 13 0.06964959571068527 14 0.06816584596533246 15 0.06206839263224028 16 0.06568570952966975 17 0.06901060859407347 18 0.08037158292162888 19 0.06107200594193037 20 0.06273987061918827 21 0.06086623042980114 22 0.05102149671793473 23 0.05303593067877869 24 0.058288621383129846 25 0.06317308222367084 26 0.05253773733362373 27 0.056599096125647834 28 0.047989015486556735 29 0.06396369340185153 30 0.05495289202861406 31 0.055201988701191536 32 0.05107564816849505 33 0.057931221809431735 34 0.058949269079965776 35 0.060595473176999544 36 0.05298177922821837 37 0.05689151395867356 38 0.066909532312333 39 0.0622741681443695 40 0.05735721643349232 41 0.0700936376052799 42 0.05966406822736201 43 0.04957023784291812 44 0.06092038188036147 45 0.014837497453528038 46 0.008187699324720582 47 0.01370031699176129 48 0.020036036707318884 49 0.10835705257120293 50 0.00836098396651361 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 9233363.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.755959708270375 #Duplication Level Percentage of deduplicated Percentage of total 1 77.53828563650875 23.072261032483137 2 11.666971309864465 6.943238564277468 3 3.891391969768848 3.473763079845862 4 1.7913327731542992 2.1321130328833426 5 1.0441921445326994 1.5535469690203718 6 0.6852467218516517 1.2234104307385263 7 0.4582508551978496 0.9544985788483356 8 0.3625670556289582 0.8630824559073201 9 0.26049442114634674 0.6976135349873916 >10 1.7902546494123306 10.525281877396564 >50 0.22061587252884415 4.591411990475459 >100 0.22359136183726339 14.143077190726224 >500 0.03598345545251112 7.440840807348062 >1k 0.028808474396524685 16.385718631759136 >5k 0.001500822681170014 2.984870710667084 >10k+ 5.124760374726876E-4 3.015271112635708 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 36200 0.3920565020567262 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30133 0.32634913194683235 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 27999 0.30323729284768725 No Hit CTCTACCACCATGAATCTACTTCTGATCCTTACCTTTGTTGCAGCTGCTG 22879 0.24778620747391822 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 21716 0.23519058007358748 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18619 0.20164917159652446 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 18399 0.19926650777187033 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 15717 0.170219669691314 No Hit GGTATAGAGACTGCAGAGGGACCAGGGGCTTTAGCTGTTGGCAGCTATGG 15214 0.16477203376494567 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15179 0.1643929736110234 No Hit GTTGTAGACCTTGGTGTAGACTCCAGGCCTGTTCTTCTGGGCACAGCCAT 14938 0.16178287369401592 No Hit GTTCTAGACATGTATTTTCCAGCTGCCTCTAGTTTTTGAACTTGCAGACA 13871 0.15022695414444337 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 13500 0.14620891651286752 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 12462 0.13496707537654482 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 9565 0.10359172492189467 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 9351 0.10127404283791291 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.1660580224128522E-5 0.0 0.0 0.0 0.0 2 2.1660580224128522E-5 0.0 0.0 0.0 0.0 3 2.1660580224128522E-5 1.0830290112064261E-5 0.0 0.0 0.0 4 2.1660580224128522E-5 1.0830290112064261E-5 0.0 0.0 0.0 5 2.1660580224128522E-5 3.249087033619278E-5 0.0 0.0 0.0 6 2.1660580224128522E-5 3.249087033619278E-5 0.0 0.0 0.0 7 2.1660580224128522E-5 3.249087033619278E-5 0.0 0.0 0.0 8 2.1660580224128522E-5 3.249087033619278E-5 0.0 0.0 0.0 9 2.1660580224128522E-5 3.249087033619278E-5 0.0 0.0 0.0 10 3.249087033619278E-5 3.249087033619278E-5 0.0 1.0830290112064261E-5 0.0 11 4.3321160448257044E-5 3.249087033619278E-5 0.0 2.1660580224128522E-5 0.0 12 4.3321160448257044E-5 3.249087033619278E-5 0.0 3.249087033619278E-5 0.0 13 4.3321160448257044E-5 3.249087033619278E-5 0.0 3.249087033619278E-5 0.0 14 4.3321160448257044E-5 3.249087033619278E-5 0.0 3.249087033619278E-5 0.0 15 4.3321160448257044E-5 3.249087033619278E-5 0.0 4.3321160448257044E-5 0.0 16 5.41514505603213E-5 3.249087033619278E-5 0.0 6.498174067238556E-5 0.0 17 5.41514505603213E-5 3.249087033619278E-5 0.0 7.581203078444983E-5 0.0 18 6.498174067238556E-5 3.249087033619278E-5 0.0 8.664232089651409E-5 0.0 19 6.498174067238556E-5 3.249087033619278E-5 0.0 8.664232089651409E-5 0.0 20 8.664232089651409E-5 3.249087033619278E-5 0.0 1.2996348134477112E-4 0.0 21 8.664232089651409E-5 3.249087033619278E-5 0.0 1.5162406156889966E-4 0.0 22 8.664232089651409E-5 3.249087033619278E-5 0.0 2.0577551212922095E-4 0.0 23 9.747261100857835E-5 5.41514505603213E-5 0.0 3.032481231377993E-4 0.0 24 1.1913319123270687E-4 5.41514505603213E-5 0.0 4.8736305504289173E-4 0.0 25 1.1913319123270687E-4 5.41514505603213E-5 0.0 5.41514505603213E-4 0.0 26 1.7328464179302818E-4 5.41514505603213E-5 0.0 6.281568264997271E-4 0.0 27 1.7328464179302818E-4 5.41514505603213E-5 0.0 8.014414682927553E-4 0.0 28 1.8411493190509243E-4 5.41514505603213E-5 0.0 0.001418768004680418 0.0 29 2.0577551212922095E-4 5.41514505603213E-5 0.0 0.002101076281740467 0.0 30 2.0577551212922095E-4 5.41514505603213E-5 0.0 0.0033898808050761135 0.0 31 2.274360923533495E-4 5.41514505603213E-5 0.0 0.0051768786735667165 0.0 32 2.274360923533495E-4 5.41514505603213E-5 0.0 0.007288785245419247 0.0 33 2.3826638246541375E-4 5.41514505603213E-5 0.0 0.0099097154525388 0.0 34 2.49096672577478E-4 5.41514505603213E-5 0.0 0.01266060914100312 0.0 35 2.49096672577478E-4 5.41514505603213E-5 0.0 0.016202114007648136 0.0 36 2.5992696268954224E-4 5.41514505603213E-5 0.0 0.020804987305275444 0.0 37 2.707572528016065E-4 5.41514505603213E-5 0.0 0.02724900992195368 0.0 38 2.707572528016065E-4 5.41514505603213E-5 0.0 0.034711079809165955 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTAGAC 4355 0.0 19.095457 3 CTAGACA 4520 0.0 18.593483 4 TAGACAT 4655 0.0 18.337032 5 GTTCTAG 4675 0.0 18.26789 1 CTCTAGT 4365 0.0 18.242916 27 CTCTACC 8735 0.0 17.96656 1 TCTACCA 9075 0.0 17.357725 2 ACTTGCA 4935 0.0 16.495821 40 GTAGACC 7115 0.0 16.388409 4 CCTTACC 9375 0.0 16.354015 28 GGTATAG 5750 0.0 16.345505 1 AATCTAC 6525 0.0 16.318472 14 CTTACCT 9515 0.0 16.13712 29 GAATCTA 6640 0.0 16.135332 13 ATCCTTA 9610 0.0 16.114325 26 TAGACCT 7420 0.0 16.09952 5 GACATGT 3770 0.0 15.813945 7 CCTCTAG 6355 0.0 15.783821 26 TATTGGT 4050 0.0 15.753564 4 TTACCTT 9880 0.0 15.696473 30 >>END_MODULE