##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558136_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9205575 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.2564009309576 33.0 32.0 34.0 25.0 34.0 2 31.509133758619097 33.0 32.0 34.0 27.0 34.0 3 31.563390445463753 33.0 32.0 34.0 27.0 34.0 4 31.4630310436882 33.0 32.0 34.0 27.0 34.0 5 31.53003185569614 33.0 32.0 34.0 27.0 34.0 6 34.87369881837908 38.0 36.0 38.0 27.0 38.0 7 34.89980452063016 38.0 36.0 38.0 27.0 38.0 8 34.924336502608476 38.0 36.0 38.0 27.0 38.0 9 35.10532975941209 38.0 36.0 38.0 28.0 38.0 10 35.048768056313705 38.0 36.0 38.0 28.0 38.0 11 35.078095936429825 38.0 36.0 38.0 28.0 38.0 12 34.98027065120864 38.0 36.0 38.0 27.0 38.0 13 35.02208476928383 38.0 36.0 38.0 27.0 38.0 14 35.07699595082328 38.0 36.0 38.0 28.0 38.0 15 35.04938854987331 38.0 36.0 38.0 27.0 38.0 16 35.02512933738522 38.0 36.0 38.0 27.0 38.0 17 34.98279998805072 38.0 36.0 38.0 27.0 38.0 18 34.990412657547196 38.0 36.0 38.0 27.0 38.0 19 34.99643172751295 38.0 36.0 38.0 27.0 38.0 20 34.94626951602697 38.0 36.0 38.0 27.0 38.0 21 34.95637719534086 38.0 36.0 38.0 27.0 38.0 22 34.99061590394951 38.0 36.0 38.0 27.0 38.0 23 34.99122488274768 38.0 36.0 38.0 27.0 38.0 24 34.98278260727874 38.0 36.0 38.0 27.0 38.0 25 34.99575626726196 38.0 36.0 38.0 27.0 38.0 26 35.002998291796004 38.0 36.0 38.0 27.0 38.0 27 35.00381942464213 38.0 36.0 38.0 27.0 38.0 28 35.028004334330014 38.0 36.0 38.0 27.0 38.0 29 34.996985413730265 38.0 36.0 38.0 27.0 38.0 30 35.003513088536025 38.0 36.0 38.0 27.0 38.0 31 35.033912058725285 38.0 36.0 38.0 27.0 38.0 32 35.048280308400074 38.0 36.0 38.0 27.0 38.0 33 35.01749515918343 38.0 36.0 38.0 27.0 38.0 34 34.99978491294677 38.0 36.0 38.0 27.0 38.0 35 34.99450832783395 38.0 36.0 38.0 27.0 38.0 36 34.96725875352708 38.0 36.0 38.0 27.0 38.0 37 34.95812570100184 38.0 36.0 38.0 27.0 38.0 38 34.93947472048188 38.0 36.0 38.0 26.0 38.0 39 34.96038031301684 38.0 36.0 38.0 27.0 38.0 40 34.93832280981905 38.0 36.0 38.0 26.0 38.0 41 34.937733927538474 38.0 36.0 38.0 25.0 38.0 42 34.83196954019711 38.0 36.0 38.0 25.0 38.0 43 34.882046803160044 38.0 36.0 38.0 25.0 38.0 44 34.86460997819256 38.0 36.0 38.0 25.0 38.0 45 34.87779144703074 38.0 36.0 38.0 25.0 38.0 46 34.85450827351904 38.0 36.0 38.0 25.0 38.0 47 34.78127167504474 38.0 36.0 38.0 25.0 38.0 48 34.733255228489256 38.0 36.0 38.0 25.0 38.0 49 34.66124679881485 38.0 36.0 38.0 25.0 38.0 50 34.26884176164987 38.0 34.0 38.0 16.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 31.0 4 637.0 5 1263.0 6 1513.0 7 662.0 8 202.0 9 149.0 10 136.0 11 118.0 12 110.0 13 90.0 14 105.0 15 200.0 16 508.0 17 2024.0 18 10889.0 19 34745.0 20 62827.0 21 82936.0 22 94184.0 23 103272.0 24 113438.0 25 125949.0 26 139082.0 27 156626.0 28 176208.0 29 202233.0 30 233680.0 31 270093.0 32 319517.0 33 392916.0 34 513758.0 35 751760.0 36 1471250.0 37 3942464.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.15506026605135 18.116309327620662 13.485167469938702 24.24346293638929 2 14.674466288091729 21.634878864166552 37.76359434364502 25.927060504096705 3 18.614817651260243 27.408282480996572 29.339307973700716 24.63759189404247 4 12.912367793453743 17.815362094023275 35.85079636554971 33.42147374697328 5 13.87720202666035 37.19725715303871 33.920801190312574 15.004739629988359 6 31.365772657199294 34.92846645287888 18.752764239563334 14.952996650358491 7 26.32866895329442 32.03810055908429 23.311146413561502 18.322084074059784 8 27.899352096021495 31.54406335138423 21.374787390031717 19.181797162562557 9 27.583877546672785 14.801428975757236 19.819962880020032 37.79473059754994 10 17.00550236844574 27.829544519464278 31.20199124016943 23.96296187192055 11 33.03470748326235 23.621819237954078 21.931108516401995 21.41236476238158 12 23.621765925229646 25.936379405788813 29.446608588924782 20.995246080056766 13 29.55099458615118 20.54898307581182 25.39391307514331 24.506109262893695 14 24.154929278925813 20.82078903811665 25.86820726210206 29.156074420855475 15 26.465065668545503 25.329810083868654 25.0071438516844 23.197980395901446 16 23.549579500909847 26.285391549322107 26.95368134939713 23.211347600370917 17 23.564077368076646 26.2483722224517 27.298487118002186 22.889063291469466 18 24.86175694835353 23.789806639101766 29.46685460720666 21.88158180533804 19 23.784279302075237 26.97325001434735 28.482634921628673 20.759835761948736 20 24.694700961722404 23.655566859706788 29.392369263143248 22.25736291542756 21 24.505627695087867 25.664926470356463 26.919472108690336 22.90997372586533 22 23.923834878771356 25.443989876501533 26.185102389729476 24.447072854997632 23 21.83986211038538 26.118904903965152 27.10374532808071 24.937487657568763 24 22.673177147018382 28.09462477786654 26.43337626554934 22.798821809565734 25 24.07744438949365 24.119465443498203 25.942848757900688 25.86024140910746 26 23.63434725540248 24.890155997123355 27.397382654912732 24.07811409256143 27 24.642680914795985 24.842556142223344 26.052187106689246 24.46257583629143 28 23.33206106538385 24.412351316362614 28.234621714744772 24.020965903508763 29 23.503172154604275 24.22486341387487 29.200876603359806 23.071087828161048 30 23.78001243586027 25.444724383535323 28.68008048420949 22.095182696394915 31 25.282112380643092 24.139446650420194 26.381129571168316 24.197311397768402 32 21.864989684967092 25.259723421047887 28.187982046560784 24.68730484742424 33 23.007428430195514 25.67799397386996 27.483757034053657 23.83082056188087 34 21.895854197267404 25.355747511598842 28.176348510285216 24.572049780848534 35 23.106609125596375 26.191697412662624 28.465145752052766 22.23654770968824 36 24.005249429409847 25.53159439191392 27.094641886751443 23.36851429192479 37 24.299407837311175 25.850369119416268 27.44202304155529 22.408200001717265 38 24.483876781308542 25.082093836869735 26.68017632484398 23.753853056977743 39 24.559990304553327 24.022208224934364 27.00498195962151 24.412819510890802 40 24.184853669612195 25.806125197242185 26.476036718403044 23.532984414742575 41 22.148081727476303 26.281708105689646 26.951146589363923 24.619063577470126 42 25.873352727343867 26.214499640506126 26.730725232013487 21.181422400136515 43 25.18602540489672 23.61459476854187 26.131935530393164 25.067444296168244 44 23.769356233830628 25.311365997461376 27.536508183567737 23.382769585140256 45 26.260359401142956 24.089893744160275 26.577334260446317 23.07241259425045 46 22.59895187327746 24.92267352163865 29.580404925558973 22.89796967952492 47 24.979066846915774 24.75367216992842 27.760462801132384 22.50679818202342 48 24.89126881140016 26.3314565801587 26.637573895866 22.139700712575134 49 23.43432623317569 25.567657565637553 29.18348241456904 21.814533786617716 50 24.05892848044396 26.35502163912884 25.711882634084432 23.874167246342772 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 492.0 1 812.0 2 1132.0 3 3766.0 4 6400.0 5 7822.0 6 9244.0 7 8598.0 8 7952.0 9 10130.0 10 12308.0 11 16974.0 12 21640.0 13 37250.5 14 52861.0 15 64746.5 16 76632.0 17 71026.0 18 65420.0 19 57113.5 20 48807.0 21 53543.0 22 58279.0 23 66658.5 24 75038.0 25 86336.5 26 97635.0 27 108153.0 28 118671.0 29 136215.0 30 153759.0 31 179536.5 32 205314.0 33 224484.5 34 243655.0 35 266820.0 36 289985.0 37 317861.0 38 345737.0 39 371120.0 40 396503.0 41 419544.5 42 442586.0 43 451717.0 44 460848.0 45 541090.0 46 621332.0 47 793079.5 48 964827.0 49 976407.0 50 987987.0 51 828955.0 52 669923.0 53 557996.5 54 446070.0 55 462761.0 56 479452.0 57 458609.5 58 437767.0 59 411576.5 60 385386.0 61 332094.0 62 278802.0 63 245117.5 64 211433.0 65 179354.5 66 147276.0 67 133165.5 68 119055.0 69 101712.0 70 84369.0 71 68085.5 72 51802.0 73 49960.5 74 48119.0 75 37019.0 76 25919.0 77 21841.0 78 17763.0 79 14555.0 80 11347.0 81 10139.0 82 8931.0 83 8500.0 84 8069.0 85 6365.5 86 4662.0 87 4407.5 88 4153.0 89 2145.0 90 137.0 91 106.5 92 76.0 93 44.5 94 13.0 95 9.0 96 5.0 97 3.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04391903819153068 2 0.0 3 0.0 4 0.014360862846698874 5 0.01379598775741874 6 0.05959432191905449 7 0.06202762999595354 8 0.06754602509892103 9 0.05582486699635818 10 0.06606865948080375 11 0.06145189192418725 12 0.05842111981054958 13 0.06539515456666205 14 0.0634615436841262 15 0.05818213419585414 16 0.06163656262645191 17 0.06425454140561562 18 0.07518270178668904 19 0.05725878068453084 20 0.058823050162537374 21 0.057269643667017 22 0.0478840267989778 23 0.04988281557643059 24 0.05458648699293634 25 0.05893167998739894 26 0.049665555926707454 27 0.05252252032056661 28 0.04517914415992483 29 0.059952800341097644 30 0.05175124856404951 31 0.052240082775926545 32 0.048242505221020957 33 0.05406506383360084 34 0.055281717872050364 35 0.05637887910315216 36 0.04969814487416593 37 0.05316343628724984 38 0.06232093052307977 39 0.0584428457755219 40 0.053847804183877704 41 0.0659817556209145 42 0.05583572997884434 43 0.04647183907577745 44 0.057671574019004794 45 0.01493660091846517 46 0.008386222479312807 47 0.013861165652335677 48 0.020791748478503513 49 0.10408909818235144 50 0.007843073355004984 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 9205575.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.12053259364059 #Duplication Level Percentage of deduplicated Percentage of total 1 73.50730796600793 26.551231132569665 2 13.789485500834111 9.961671209648259 3 5.159504603516073 5.590921625950229 4 2.347014328161213 3.391016301523543 5 1.336748931518802 2.414204167521956 6 0.8175201381748858 1.7717557678142113 7 0.5529054246959778 1.3979866889752233 8 0.3822697432884804 1.1046229377611345 9 0.2894516268809729 0.940963223073283 >10 1.5463882717451798 10.288568420276158 >50 0.13377546382546598 3.3658246249794623 >100 0.10899112595238773 8.081245727412265 >500 0.014077117269947632 3.536895519309751 >1k 0.01256609830798195 9.052329886737128 >5k 0.0011478647452537666 2.8940880953147445 >10k+ 8.45795075450144E-4 9.656674671133052 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 108227 1.175668005529258 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 86482 0.9394524513677853 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 70542 0.7662965105384509 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 61916 0.672592423612865 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 50154 0.5448220236106924 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 41868 0.4548113507303998 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 41591 0.4518023045817344 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 39158 0.42537266819291575 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 32147 0.3492122979824726 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 27740 0.3013391341659809 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 27217 0.2956577943257211 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 26273 0.2854031388587894 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25829 0.2805799746349359 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 24501 0.26615393389332004 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 23387 0.2540525714037417 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21644 0.235118392930371 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 18830 0.20454996021432664 No Hit GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT 18508 0.20105207985378426 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 18251 0.19826029335484205 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 18152 0.19718485808871253 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 15269 0.1658668795811234 No Hit CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT 14261 0.15491699323507765 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 14012 0.15221211059602469 No Hit ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG 13165 0.14301116443025014 No Hit GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC 12408 0.1347878866882297 No Hit CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC 11682 0.12690136140328007 No Hit ACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG 11013 0.11963402612004138 No Hit GGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG 10820 0.11753747050021318 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 9860 0.10710900731350295 No Hit ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA 9844 0.10693519959372447 No Hit ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG 9792 0.10637032450444431 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.517789491693892E-5 0.0 0.0 0.0 0.0 2 6.517789491693892E-5 0.0 0.0 0.0 0.0 3 6.517789491693892E-5 0.0 0.0 0.0 0.0 4 6.517789491693892E-5 0.0 0.0 1.0862982486156486E-5 0.0 5 7.60408774030954E-5 0.0 0.0 2.1725964972312972E-5 0.0 6 7.60408774030954E-5 0.0 0.0 2.1725964972312972E-5 0.0 7 7.60408774030954E-5 0.0 0.0 2.1725964972312972E-5 0.0 8 1.0862982486156487E-4 0.0 0.0 2.1725964972312972E-5 0.0 9 1.0862982486156487E-4 0.0 0.0 2.1725964972312972E-5 0.0 10 1.1949280734772135E-4 0.0 0.0 7.60408774030954E-5 0.0 11 1.8467070226466027E-4 0.0 0.0 1.1949280734772135E-4 0.0 12 1.8467070226466027E-4 0.0 0.0 1.520817548061908E-4 0.0 13 1.8467070226466027E-4 1.0862982486156486E-5 0.0 1.629447372923473E-4 1.0862982486156486E-5 14 1.8467070226466027E-4 1.0862982486156486E-5 0.0 1.8467070226466027E-4 1.0862982486156486E-5 15 1.8467070226466027E-4 1.0862982486156486E-5 0.0 2.498485971815992E-4 1.0862982486156486E-5 16 2.2812263220928623E-4 1.0862982486156486E-5 0.0 3.041635096123816E-4 1.0862982486156486E-5 17 2.2812263220928623E-4 1.0862982486156486E-5 0.0 3.3675245707085106E-4 1.0862982486156486E-5 18 2.2812263220928623E-4 1.0862982486156486E-5 0.0 3.6934140452932055E-4 1.0862982486156486E-5 19 2.389856146954427E-4 1.0862982486156486E-5 0.0 4.0193035198779E-4 1.0862982486156486E-5 20 2.498485971815992E-4 1.0862982486156486E-5 0.0 4.671082469047289E-4 1.0862982486156486E-5 21 3.150264920985381E-4 1.0862982486156486E-5 0.0 5.757380717662938E-4 1.0862982486156486E-5 22 3.150264920985381E-4 1.0862982486156486E-5 0.0 6.952308791140151E-4 1.0862982486156486E-5 23 3.4761543955700756E-4 2.1725964972312972E-5 0.0 0.0010537093011571792 1.0862982486156486E-5 24 3.4761543955700756E-4 2.1725964972312972E-5 0.0 0.0014230507056864998 1.0862982486156486E-5 25 3.5847842204316405E-4 2.1725964972312972E-5 0.0 0.0015642694780065342 1.0862982486156486E-5 26 4.671082469047289E-4 2.1725964972312972E-5 0.0 0.0019444738650220112 1.0862982486156486E-5 27 4.779712293908854E-4 2.1725964972312972E-5 0.0 0.0024658970243575224 1.0862982486156486E-5 28 4.779712293908854E-4 2.1725964972312972E-5 0.0 0.004334330011976438 1.0862982486156486E-5 29 4.888342118770419E-4 2.1725964972312972E-5 0.0 0.006257077912026137 1.0862982486156486E-5 30 4.888342118770419E-4 2.1725964972312972E-5 0.0 0.009320438973122265 1.0862982486156486E-5 31 5.322861418216679E-4 2.1725964972312972E-5 0.0 0.01344837231786173 1.0862982486156486E-5 32 5.322861418216679E-4 2.1725964972312972E-5 0.0 0.017511127767684258 1.0862982486156486E-5 33 5.322861418216679E-4 3.258894745846946E-5 0.0 0.022497236728830083 1.0862982486156486E-5 34 5.431491243078244E-4 3.258894745846946E-5 0.0 0.02766801639224057 1.0862982486156486E-5 35 5.431491243078244E-4 3.258894745846946E-5 0.0 0.035206926237633177 1.0862982486156486E-5 36 5.540121067939808E-4 3.258894745846946E-5 0.0 0.04454909117572775 1.0862982486156486E-5 37 6.083270192247633E-4 3.258894745846946E-5 0.0 0.05747604033425397 1.0862982486156486E-5 38 6.191900017109197E-4 3.258894745846946E-5 0.0 0.0730209682719439 1.0862982486156486E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAATTCG 670 0.0 14.776165 15 GTCGACG 715 0.0 14.768153 36 CCGTCGT 2505 0.0 14.753736 9 GTATTAG 1485 0.0 14.672295 1 GTACTAG 1065 0.0 14.672295 1 CGACGAA 775 0.0 14.476284 38 CGTCGTA 2530 0.0 14.434042 10 TACCGTC 2735 0.0 14.318143 7 AGTCGAC 740 0.0 14.269539 35 ATTCGTA 3645 0.0 13.820364 24 TAGGTCG 590 0.0 13.795379 21 GACGGCC 3740 0.0 13.76385 11 GCATTCG 3635 0.0 13.676313 22 CGCTAGA 3680 0.0 13.629439 37 GGCGTTA 2330 0.0 13.597052 42 TCGACGA 810 0.0 13.579256 37 ATACCGT 3015 0.0 13.426245 6 GTCGTAG 2695 0.0 13.305296 11 CGTATTG 3795 0.0 13.273961 27 CGCAATA 1520 0.0 13.170091 36 >>END_MODULE