##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2558117_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7979085 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.88123851293726 33.0 32.0 34.0 18.0 34.0 2 31.06814666092666 33.0 32.0 34.0 25.0 34.0 3 31.103135259243384 33.0 32.0 34.0 25.0 34.0 4 31.019518403425955 33.0 32.0 34.0 25.0 34.0 5 31.049812729153782 33.0 32.0 34.0 25.0 34.0 6 34.091242416893664 38.0 34.0 38.0 16.0 38.0 7 34.13729368718343 38.0 34.0 38.0 16.0 38.0 8 34.09166890689847 38.0 34.0 38.0 16.0 38.0 9 34.32641261498029 38.0 34.0 38.0 26.0 38.0 10 34.25804161755389 38.0 34.0 38.0 16.0 38.0 11 34.31557039434973 38.0 34.0 38.0 26.0 38.0 12 34.23961469266213 38.0 34.0 38.0 16.0 38.0 13 34.29403622094513 38.0 34.0 38.0 26.0 38.0 14 34.313715169095204 38.0 34.0 38.0 25.0 38.0 15 34.23496942318574 38.0 34.0 38.0 16.0 38.0 16 34.22933105738315 38.0 34.0 38.0 16.0 38.0 17 34.173313857415984 38.0 34.0 38.0 16.0 38.0 18 34.20448434876931 38.0 34.0 38.0 16.0 38.0 19 34.10352277234796 38.0 34.0 38.0 16.0 38.0 20 34.102411993355126 38.0 34.0 38.0 16.0 38.0 21 34.14083519601558 38.0 34.0 38.0 16.0 38.0 22 34.170253481445556 38.0 34.0 38.0 16.0 38.0 23 34.15951340285258 38.0 34.0 38.0 16.0 38.0 24 34.0442557009983 38.0 34.0 38.0 16.0 38.0 25 34.122264896288236 38.0 34.0 38.0 16.0 38.0 26 34.07520599166446 38.0 34.0 38.0 16.0 38.0 27 34.097383973225 38.0 34.0 38.0 16.0 38.0 28 34.06716822793591 38.0 34.0 38.0 16.0 38.0 29 34.10676763062431 38.0 34.0 38.0 16.0 38.0 30 34.08398331387622 38.0 34.0 38.0 16.0 38.0 31 34.139957150475276 38.0 34.0 38.0 16.0 38.0 32 34.16231886237583 38.0 34.0 38.0 16.0 38.0 33 34.092691455223246 38.0 34.0 38.0 16.0 38.0 34 34.11119207277526 38.0 34.0 38.0 16.0 38.0 35 34.03224893581156 38.0 34.0 38.0 16.0 38.0 36 34.05308039706307 38.0 34.0 38.0 16.0 38.0 37 34.00122908829772 38.0 34.0 38.0 16.0 38.0 38 33.98548041536091 38.0 34.0 38.0 16.0 38.0 39 34.00495708467825 38.0 34.0 38.0 16.0 38.0 40 33.97348229778226 38.0 34.0 38.0 16.0 38.0 41 33.976198524016226 38.0 34.0 38.0 16.0 38.0 42 33.91075543123053 38.0 34.0 38.0 16.0 38.0 43 33.97513160970212 38.0 34.0 38.0 16.0 38.0 44 33.920228697902076 38.0 34.0 38.0 16.0 38.0 45 33.95182567926022 38.0 34.0 38.0 16.0 38.0 46 33.92695039594139 38.0 34.0 38.0 16.0 38.0 47 33.83010808883475 38.0 34.0 38.0 16.0 38.0 48 33.84104844101799 38.0 34.0 38.0 16.0 38.0 49 33.72658456452087 38.0 34.0 38.0 16.0 38.0 50 33.29237274700044 38.0 33.0 38.0 16.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 16.0 4 270.0 5 503.0 6 632.0 7 255.0 8 182.0 9 150.0 10 125.0 11 121.0 12 98.0 13 120.0 14 96.0 15 127.0 16 301.0 17 3010.0 18 19521.0 19 57587.0 20 94729.0 21 112349.0 22 117422.0 23 121803.0 24 128408.0 25 138220.0 26 149415.0 27 164749.0 28 185140.0 29 208618.0 30 238401.0 31 275211.0 32 327263.0 33 405373.0 34 537824.0 35 790878.0 36 1450837.0 37 2449331.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.30072651998532 18.144031784747895 13.115395724724745 25.43984597054204 2 16.543525980735886 21.02630815438111 36.196957420556366 26.23320844432664 3 18.696477158365575 24.920360392877868 29.609641223851902 26.773521224904655 4 13.762830302989288 16.759310296251567 34.96196623069517 34.515893170063976 5 15.40141684645732 35.64074630776231 33.18581097598432 15.772025869796046 6 33.17602878216967 34.498099069523775 17.253493626520537 15.072378521786014 7 28.75813182531947 30.148766274779177 21.926639935608723 19.166461964292633 8 27.96730905677396 30.96984661200205 20.671753144862066 20.391091186361923 9 27.713155770236447 13.599320650828142 19.533282204108417 39.154241374826995 10 17.542078748280822 26.89105322161234 29.67205791061911 25.894810119487733 11 34.8428758315473 22.32626619995451 21.838264629201806 20.992593339296377 12 24.844517784146312 24.708955522362945 28.19824187833224 22.2482848151585 13 30.0661025047041 19.583326176940385 25.099833248731183 25.25073806962433 14 24.997937730751634 19.976067647445984 24.836817460964188 30.1891771608382 15 26.225770226920275 26.184806312279697 23.019738914289498 24.56968454651053 16 25.34193747686901 24.763411962821916 24.985494549360656 24.90915601094842 17 23.687070306339187 25.935963969358305 25.924605350686697 24.452360373615807 18 25.571885642555692 23.099662622795886 27.87561439474399 23.45283733990443 19 25.314529774147903 24.83099176947251 26.6118675317006 23.24261092467898 20 25.899282199137925 22.98553803845565 26.900361828004378 24.214817934402046 21 26.224798710624707 24.026599884461707 26.158680115377823 23.589921289535763 22 25.533612467170098 23.515255930006003 25.531807128105484 25.41932447471842 23 23.49884511355955 24.104594681315668 26.13097807803474 26.26558212709005 24 23.897031261008877 25.656006793941916 25.883775351600786 24.563186593448417 25 25.4518129312794 23.464771342147632 25.31570423087927 25.767711495693696 26 25.242784291765126 23.99026092345972 26.007200508164974 24.75975427661018 27 25.51696565046277 23.475894744865826 25.612109395372723 25.395030209298685 28 23.955897566535768 23.479417075821164 26.96431768274551 25.600367674897562 29 24.313566001632047 23.150859709117196 27.013692887223268 25.521881402027486 30 24.32624038789177 24.005128463574597 27.875446082808114 23.79318506572552 31 26.219631908301285 23.29267830953934 25.72893324316714 24.75875653899224 32 24.14901382746365 23.727449247212377 26.438597905390164 25.684939019933807 33 24.396939391568935 23.975488957218875 26.165165847308554 25.462405803903636 34 24.16017600932699 23.42296771281897 26.239656004563205 26.177200273290836 35 24.589559700093837 24.159634024718876 27.182666070749118 24.068140204438166 36 24.98839397281425 23.53351280311226 26.530870402518207 24.94722282155528 37 25.572492336953655 24.236751056391572 26.322481148423343 23.86827545823143 38 25.36854209758633 23.25824037086527 26.543807181352225 24.82941035019617 39 25.981736602470455 22.997698645415372 25.924252887224597 25.096311864889575 40 25.48614153890129 24.67624099938131 25.334120642609854 24.503496819107546 41 24.79382899293617 24.183493355977177 26.071795239552536 24.950882411534117 42 26.611199086896185 24.432472605443795 25.351318422764606 23.605009884895413 43 25.79882379357601 23.112597900711368 25.244420328620176 25.844157977092447 44 25.10982106187439 24.23972734288693 25.341222564166337 25.309229031072338 45 25.8773405722586 23.587942727768908 25.272070669757245 25.262646030215247 46 24.127215087945547 24.001624246389152 27.132810341035345 24.738350324629955 47 25.39627037435997 23.932443381665944 25.985498337215358 24.685787906758733 48 25.80089070363331 24.689560269128602 24.992878256090766 24.516670771147318 49 24.315705297562033 24.860370597551036 26.740661819486476 24.083262285400455 50 25.79752587439267 24.546475896313428 24.87142703520281 24.784571194091097 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 667.0 1 785.5 2 904.0 3 2137.0 4 3370.0 5 3929.5 6 4489.0 7 4297.5 8 4106.0 9 5121.0 10 6136.0 11 8707.0 12 11278.0 13 21706.5 14 32135.0 15 39696.5 16 47258.0 17 45258.5 18 43259.0 19 37384.5 20 31510.0 21 32379.0 22 33248.0 23 36311.0 24 39374.0 25 45419.5 26 51465.0 27 58367.5 28 65270.0 29 77413.0 30 89556.0 31 102708.0 32 115860.0 33 130591.5 34 145323.0 35 169050.5 36 192778.0 37 220347.5 38 247917.0 39 283724.0 40 319531.0 41 336758.5 42 353986.0 43 371945.0 44 389904.0 45 453573.5 46 517243.0 47 627683.5 48 738124.0 49 760737.0 50 783350.0 51 679958.0 52 576566.0 53 512763.5 54 448961.0 55 480969.5 56 512978.0 57 498328.0 58 483678.0 59 462664.0 60 441650.0 61 395779.5 62 349909.0 63 306858.5 64 263808.0 65 224039.0 66 184270.0 67 164920.0 68 145570.0 69 126241.0 70 106912.0 71 87286.0 72 67660.0 73 58163.0 74 48666.0 75 37532.5 76 26399.0 77 20984.0 78 15569.0 79 12711.5 80 9854.0 81 9396.0 82 8938.0 83 8824.0 84 8710.0 85 7034.0 86 5358.0 87 5317.5 88 5277.0 89 2740.0 90 203.0 91 148.5 92 94.0 93 51.0 94 8.0 95 5.5 96 3.0 97 3.0 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03044208703128241 2 0.0 3 1.8799148022611615E-4 4 0.0015415301378541525 5 0.02776007524672315 6 0.02759714929719385 7 0.05128407580568448 8 0.041333060119048734 9 0.040305373360479305 10 0.045393676091932844 11 0.04124533076160988 12 0.042786860899464034 13 0.03175802739286522 14 0.030517283623372856 15 0.04728612365954242 16 0.03475335831113467 17 0.0346280306576506 18 0.03942807978609076 19 0.04123279799626148 20 0.04005471805351115 21 0.031444708259155026 22 0.03438990811603085 23 0.04815088446858255 24 0.03217160864936268 25 0.038939301937502856 26 0.026920379968379832 27 0.03425204769719836 28 0.030993528706612348 29 0.032685452028647394 30 0.030417021500585593 31 0.033876064736746134 32 0.026744921253502123 33 0.02643160211979193 34 0.02801073055369131 35 0.03245986225237606 36 0.03291104180491874 37 0.027145969744651173 38 0.036683404174789463 39 0.036507945459911754 40 0.03195855163843975 41 0.03531733275181302 42 0.03476589107648308 43 0.034640563422999 44 0.030993528706612348 45 0.0 46 0.0 47 0.0 48 0.0 49 0.026018020863294473 50 0.004348869575897487 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 7979085.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.08379127146361 #Duplication Level Percentage of deduplicated Percentage of total 1 80.27430883904285 26.557784780918997 2 10.433550702929372 6.903628273518954 3 3.453984918918641 3.4281274833686246 4 1.5646905262364605 2.0706357909777444 5 0.8676521083206086 1.4352610623962174 6 0.5727183823323545 1.1368617251048345 7 0.38151173798059484 0.8835298294874318 8 0.2818721196660935 0.7460318697822439 9 0.23049970849899026 0.686322381970242 >10 1.5131891093709968 9.749382476899221 >50 0.1867555575372627 4.3474249536010054 >100 0.18384583606038007 12.878947788280962 >500 0.02948803073858094 6.7885991379378074 >1k 0.02388410882692588 15.200036640817563 >5k 0.0013526598850116631 2.947052864510667 >10k+ 6.956536551488554E-4 4.240372940427706 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 42969 0.5385203942557324 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 37063 0.46450188210803617 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 26022 0.3261276198962663 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 24973 0.3129807490457866 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23691 0.29691374386912783 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 20368 0.2552673646163689 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 17480 0.21907273829016735 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 16618 0.2082694945598399 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15507 0.19434559225775888 No Hit CTCTACCACCATGAATCTACTTCTGATCCTTACCTTTGTTGCAGCTGCTG 14728 0.18458256805134926 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13889 0.17406757792403513 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 12305 0.1542156776121573 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 12025 0.1507065033146031 No Hit ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC 11772 0.14753571368145596 No Hit GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC 11280 0.14136959313003936 No Hit GGTATAGAGACTGCAGAGGGACCAGGGGCTTTAGCTGTTGGCAGCTATGG 10863 0.13614342997975332 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 10073 0.1262425453545112 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC 10015 0.12551564496430356 No Hit GTTGTAGACCTTGGTGTAGACTCCAGGCCTGTTCTTCTGGGCACAGCCAT 9842 0.12334747655902902 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 9601 0.12032708011006274 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG 9253 0.11596567776881685 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 9155 0.11473746676467289 No Hit TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT 8324 0.10432273876014606 No Hit GTTCTAGACATGTATTTTCCAGCTGCCTCTAGTTTTTGAACTTGCAGACA 8102 0.10154046485279954 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 8061 0.10102662147351482 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.77293574388542E-5 0.0 0.0 0.0 0.0 2 8.77293574388542E-5 0.0 0.0 0.0 0.0 3 8.77293574388542E-5 0.0 0.0 1.2532765348407744E-5 0.0 4 8.77293574388542E-5 0.0 0.0 1.2532765348407744E-5 0.0 5 1.127948881356697E-4 0.0 0.0 1.2532765348407744E-5 0.0 6 1.127948881356697E-4 0.0 0.0 1.2532765348407744E-5 0.0 7 1.127948881356697E-4 0.0 0.0 2.5065530696815487E-5 0.0 8 1.127948881356697E-4 0.0 0.0 2.5065530696815487E-5 0.0 9 1.127948881356697E-4 0.0 0.0 6.266382674203871E-5 0.0 10 1.6292594952930066E-4 0.0 0.0 8.77293574388542E-5 0.0 11 1.754587148777084E-4 0.0 0.0 1.3786041883248517E-4 0.0 12 1.754587148777084E-4 0.0 0.0 1.3786041883248517E-4 0.0 13 1.8799148022611615E-4 0.0 0.0 1.5039318418089292E-4 0.0 14 1.8799148022611615E-4 0.0 1.2532765348407744E-5 1.6292594952930066E-4 0.0 15 1.8799148022611615E-4 0.0 1.2532765348407744E-5 1.754587148777084E-4 0.0 16 2.005242455745239E-4 0.0 1.2532765348407744E-5 2.3812254161974713E-4 0.0 17 2.1305701092293164E-4 0.0 1.2532765348407744E-5 2.631880723165626E-4 0.0 18 2.1305701092293164E-4 0.0 1.2532765348407744E-5 3.0078636836178583E-4 0.0 19 2.1305701092293164E-4 1.2532765348407744E-5 1.2532765348407744E-5 3.3838466440700907E-4 0.0 20 2.1305701092293164E-4 1.2532765348407744E-5 1.2532765348407744E-5 4.261140218458633E-4 0.0 21 2.1305701092293164E-4 1.2532765348407744E-5 1.2532765348407744E-5 5.38908909981533E-4 0.0 22 2.1305701092293164E-4 1.2532765348407744E-5 1.2532765348407744E-5 5.514416753299407E-4 0.0 23 2.1305701092293164E-4 1.2532765348407744E-5 1.2532765348407744E-5 7.269003902076491E-4 0.0 24 2.1305701092293164E-4 2.5065530696815487E-5 1.2532765348407744E-5 9.023591050853576E-4 0.0 25 2.255897762713394E-4 2.5065530696815487E-5 1.2532765348407744E-5 9.900884625242117E-4 0.0 26 2.631880723165626E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.0010903505853114737 0.0 27 2.7572083766497034E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.0011906127080987356 0.0 28 2.882536030133781E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.0019676441597000155 0.0 29 2.882536030133781E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.0031081258064051204 0.0 30 3.0078636836178583E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.005075769966105136 0.0 31 3.133191337101936E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.007519659209044646 0.0 32 3.133191337101936E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.009825688033151671 0.0 33 3.258518990586013E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.0131092725544345 0.0 34 3.509174297554168E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.016192332830142805 0.0 35 3.759829604522323E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.021205438969505903 0.0 36 3.759829604522323E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.02676998678419894 0.0 37 3.8851572580064005E-4 2.5065530696815487E-5 1.2532765348407744E-5 0.035029079148799644 0.0 38 4.1358125649745554E-4 3.759829604522323E-5 1.2532765348407744E-5 0.04432839103731819 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTAGAC 3350 0.0 18.980494 3 CTAGACA 3440 0.0 18.612879 4 GGTATAG 3830 0.0 18.216722 1 TAGACAT 3640 0.0 17.89288 5 GTTCTAG 3540 0.0 17.719494 1 CTCTAGT 3355 0.0 17.572304 27 CGTACGA 205 5.456968E-12 17.171667 12 TATAGAG 4095 0.0 16.655676 3 CTCTACC 5805 0.0 16.606634 1 CCTTACC 5730 0.0 16.43123 28 ATCCTTA 5720 0.0 16.383041 26 TCTACCA 5900 0.0 16.37069 2 GTATAGA 4215 0.0 16.338089 2 TAGAGAC 5000 0.0 16.282518 5 AATCTAC 4510 0.0 16.244787 14 TAGACCT 4550 0.0 16.103592 5 GAATCTA 4505 0.0 16.01813 13 CGTCGTA 2875 0.0 15.995117 10 GTAGACC 4435 0.0 15.975016 4 ATACCGT 3040 0.0 15.850442 6 >>END_MODULE