FastQCFastQC Report
Wed 25 May 2016
SRR2431457_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2431457_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4573485
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT421370.9213324193694743No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT369840.8086612288003568No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT266070.5817664210115481No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT187400.40975317509514075No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT108190.2365592103177336No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT89310.1952777805109233No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT84800.1854165915051651No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA55010.12028026767333883No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA147600.060.5731351
GTATCAA273000.042.0054551
TGGTATC51800.035.4090922
GTGGTAT52600.035.2470931
ATAACGC4250.034.3046263
TACCTGG43250.033.1660422
ATCAACG361050.031.6011853
TATCAAC362250.031.5614152
TCAACGC365700.031.2379464
CAACGCA380850.029.9685425
TATAACG4650.029.3308722
AACGCAG395400.028.9586496
GTACCTG51950.027.8983171
GCGGTAT3200.026.4688661
CGCAGAG437900.025.793878
ACGCAGA441200.025.7287857
ACCTGGG55000.024.9689393
GCAGAGT458950.024.2933259
GTACATG201800.023.8543341
TCTGTCG12450.023.7853138