FastQCFastQC Report
Wed 25 May 2016
SRR2431453_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2431453_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4187303
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT464981.110452240977068No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT399400.9538359177733257No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT291690.6966059059972494No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT290670.694169970503687No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT149490.3570078401300312No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT98480.23518718373138986No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT88990.2125234309530502No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA65280.15589987158798874No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA155100.060.2459871
GTATCAA289100.042.8837971
TACCTGG42950.040.9521872
ATAACGC5300.032.8317833
TATAACG5100.032.2750172
TATCAAC383750.032.1698882
GTGGTAT54650.032.112891
ATCAACG385650.032.096763
TGGTATC55100.032.0925982
TCAACGC391400.031.6492614
GTACCTG57800.030.6069951
CAACGCA406400.030.467275
ACCTGGG56400.029.8519383
AACGCAG423250.029.3195766
TATCACG3900.026.5293582
CGCAGAG465250.026.5010228
ACGCAGA468000.026.4256537
TCTGTCG11700.026.114298
CATGGGT98100.025.0247734
GCAGAGT483250.024.9983869