SRR2431453_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2431453_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4187303
Sequences flagged as poor quality	0
Sequence length	100
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46498	1.110452240977068	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39940	0.9538359177733257	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29169	0.6966059059972494	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29067	0.694169970503687	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14949	0.3570078401300312	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9848	0.23518718373138986	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8899	0.2125234309530502	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6528	0.15589987158798874	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	15510	60.245987	1
GTATCAA	28910	42.883797	1
TACCTGG	4295	40.952187	2
ATAACGC	530	32.831783	3
TATAACG	510	32.275017	2
TATCAAC	38375	32.169888	2
GTGGTAT	5465	32.11289	1
ATCAACG	38565	32.09676	3
TGGTATC	5510	32.092598	2
TCAACGC	39140	31.649261	4
GTACCTG	5780	30.606995	1
CAACGCA	40640	30.46727	5
ACCTGGG	5640	29.851938	3
AACGCAG	42325	29.319576	6
TATCACG	390	26.529358	2
CGCAGAG	46525	26.501022	8
ACGCAGA	46800	26.425653	7
TCTGTCG	1170	26.11429	8
CATGGGT	9810	25.024773	4
GCAGAGT	48325	24.998386	9