SRR2431450_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2431450_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4457863
Sequences flagged as poor quality	0
Sequence length	100
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40523	0.9090230004825182	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35449	0.7952016470672159	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27250	0.6112794403955438	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24072	0.5399896766679461	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12751	0.2860339135590304	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8834	0.19816670005336637	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7900	0.1772149570321026	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6426	0.14414978656813812	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	15260	58.304314	1
GTATCAA	27465	40.6006	1
TATAACG	530	39.930107	2
TACCTGG	4210	38.762447	2
ATAACGC	550	35.91289	3
GTACCTG	5140	32.495926	1
TAACGCA	700	31.576473	4
TATCAAC	36205	30.616451	2
ATCAACG	36200	30.607689	3
TCAACGC	36585	30.272736	4
GTGGTAT	5760	30.141691	1
ACCTGGG	5505	29.302225	3
CAACGCA	38125	29.037857	5
TGGTATC	5965	28.777048	2
AACGCAG	39430	28.134834	6
TATCACG	435	25.946918	2
ACGCAGA	44200	24.99221	7
CGCAGAG	44200	24.907131	8
GCAGAGT	46175	23.516039	9
TCTGTCG	1205	23.40579	8