SRR2431449_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2431449_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3369652
Sequences flagged as poor quality	0
Sequence length	100
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36004	1.0684782879656416	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31099	0.9229142950073183	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23741	0.7045534672423147	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23475	0.696659477002373	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12601	0.3739555301259596	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8306	0.24649429674043494	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6909	0.20503600965322233	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5878	0.17443937830968895	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	11625	63.389	1
TATAACG	315	49.27847	2
GTATCAA	21330	41.253983	1
ATAACGC	425	39.84441	3
GTGGTAT	3840	38.84572	1
TGGTATC	3855	37.826065	2
TACCTGG	2905	34.32761	2
GTACACG	325	31.8533	1
TAACGCA	555	31.359026	4
TATCAAC	28525	30.737894	2
ATCAACG	28510	30.737566	3
TCAACGC	28960	30.308674	4
CAACGCA	30065	29.226896	5
AACGCAG	31055	28.367922	6
GTACCTG	3580	28.259895	1
TCTGTCG	890	27.994667	8
TACACGG	365	27.06327	2
CGCAGAG	34575	25.43906	8
ACGCAGA	34735	25.34895	7
GCAGAGT	36365	23.928324	9