Basic Statistics
Measure | Value |
---|---|
Filename | SRR2431444_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7141576 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 21166 | 0.296377158207096 | No Hit |
ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA | 8458 | 0.11843324218631854 | No Hit |
GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA | 7984 | 0.11179605173984004 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8185 | 0.0 | 43.3657 | 1 |
GTATCAA | 13915 | 0.0 | 34.32643 | 1 |
ATCAACG | 15000 | 0.0 | 30.179398 | 3 |
TCAACGC | 15095 | 0.0 | 29.989046 | 4 |
TATCAAC | 16690 | 0.0 | 27.574135 | 2 |
GTGGTAT | 4215 | 0.0 | 25.207455 | 1 |
GTACATG | 29720 | 0.0 | 24.360716 | 1 |
TACATGG | 29620 | 0.0 | 23.170923 | 2 |
TGGTATC | 4505 | 0.0 | 22.95638 | 2 |
ACGCAGA | 19530 | 0.0 | 22.550444 | 7 |
CGCAGAG | 19465 | 0.0 | 22.263073 | 8 |
CAACGCA | 20460 | 0.0 | 22.148169 | 5 |
ACATGGG | 30780 | 0.0 | 21.793695 | 3 |
AACGCAG | 21350 | 0.0 | 21.222963 | 6 |
CATGGGT | 6975 | 0.0 | 20.218386 | 4 |
ATGCGGG | 2130 | 0.0 | 19.418322 | 8 |
TACACGC | 3460 | 0.0 | 19.020344 | 5 |
GCAGAGT | 21945 | 0.0 | 18.80475 | 9 |
TTACACG | 3635 | 0.0 | 18.492733 | 4 |
CATGGGG | 18355 | 0.0 | 17.773565 | 4 |