SRR2431441_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2431441_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3522182
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32039	0.9096349933081255	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30537	0.8669909732092208	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27490	0.7804820988807506	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21875	0.6210638746095459	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14538	0.41275550212907797	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6066	0.17222278689744028	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6033	0.17128586768088644	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3869	0.10984668026808382	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATAACG	605	62.970417	2
GGTATCA	11440	58.977222	1
ATAACGC	665	57.28887	3
TACCTGG	4225	46.643833	2
TAACGCA	875	43.539547	4
GTACCTG	4770	42.216923	1
GTATCAA	20435	39.855076	1
GTCTCGC	1430	39.81168	1
GTATAAC	1125	38.476585	1
TCTGTCG	1450	36.30866	8
TCTCGCT	1680	32.475483	2
TCGCTCT	1645	32.308697	4
ACCTGGG	6165	31.43193	3
CTCGCTC	1690	31.170103	3
TATCACG	410	30.973253	2
CGCTCTG	1560	30.133812	5
ATCAACG	27850	29.115145	3
TATCAAC	27865	29.082594	2
TCAACGC	28015	28.994034	4
CTGTCGC	1855	28.888243	9