FastQCFastQC Report
Wed 25 May 2016
SRR2431440_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2431440_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12859956
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA287920.2238887909103266No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA205550.046.54011
GTATCAA353750.035.919471
ATCAACG424400.028.9194413
TCAACGC427850.028.576164
TATCAAC463850.027.0175552
GTACATG820800.026.9923361
TACATGG810800.026.1936472
CAACGCA478750.025.5672385
CATGGGT257450.025.0139734
AACGCAG492950.024.7813346
ACATGGG847650.024.3115353
ACGCAGA522850.022.7978237
CGCAGAG524950.022.5175448
ATGGGTG161800.020.1619535
CATGGGA341700.020.1396124
CATGGGG294000.019.921674
GCAGAGT575900.019.7092919
TACCTGG80950.019.6854932
GTGGTAT104650.019.315661
TAGCGTG22450.019.0513619