Basic Statistics
Measure | Value |
---|---|
Filename | SRR2431440_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12859956 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 28792 | 0.2238887909103266 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 20555 | 0.0 | 46.5401 | 1 |
GTATCAA | 35375 | 0.0 | 35.91947 | 1 |
ATCAACG | 42440 | 0.0 | 28.919441 | 3 |
TCAACGC | 42785 | 0.0 | 28.57616 | 4 |
TATCAAC | 46385 | 0.0 | 27.017555 | 2 |
GTACATG | 82080 | 0.0 | 26.992336 | 1 |
TACATGG | 81080 | 0.0 | 26.193647 | 2 |
CAACGCA | 47875 | 0.0 | 25.567238 | 5 |
CATGGGT | 25745 | 0.0 | 25.013973 | 4 |
AACGCAG | 49295 | 0.0 | 24.781334 | 6 |
ACATGGG | 84765 | 0.0 | 24.311535 | 3 |
ACGCAGA | 52285 | 0.0 | 22.797823 | 7 |
CGCAGAG | 52495 | 0.0 | 22.517544 | 8 |
ATGGGTG | 16180 | 0.0 | 20.161953 | 5 |
CATGGGA | 34170 | 0.0 | 20.139612 | 4 |
CATGGGG | 29400 | 0.0 | 19.92167 | 4 |
GCAGAGT | 57590 | 0.0 | 19.709291 | 9 |
TACCTGG | 8095 | 0.0 | 19.685493 | 2 |
GTGGTAT | 10465 | 0.0 | 19.31566 | 1 |
TAGCGTG | 2245 | 0.0 | 19.051361 | 9 |