SRR2431434_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2431434_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5043176
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38911	0.7715574471325213	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32592	0.6462594206507962	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24782	0.4913966912913608	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19068	0.37809507342198645	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10888	0.21589569747317958	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10409	0.20639771445612842	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8068	0.15997855319742957	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7370	0.14613806855045314	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	13470	61.54902	1
GTATCAA	25290	42.81053	1
GTGGTAT	4615	36.602062	1
TGGTATC	4595	35.925423	2
ATCAACG	33365	32.37801	3
TATAACG	495	32.30383	2
TCAACGC	33705	32.135117	4
TATCAAC	33665	31.977715	2
CAACGCA	35090	30.840187	5
TACCTGG	4385	30.138176	2
AACGCAG	36585	29.681854	6
ATAACGC	545	29.340176	3
GTACCTG	5185	26.407486	1
ACGCAGA	41095	26.275688	7
CGCAGAG	41170	26.18215	8
GCAGAGT	43405	24.498245	9
GTACATG	19600	23.622284	1
TCTGTCG	1370	23.332993	8
TACATGG	19525	23.244303	2
ACCTGGG	5565	23.071602	3