Basic Statistics
Measure | Value |
---|---|
Filename | SRR2431433_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4859399 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 32484 | 0.6684777273897451 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6530 | 0.0 | 41.680267 | 1 |
TACCTGG | 3835 | 0.0 | 35.66658 | 2 |
GTATCAA | 10970 | 0.0 | 32.995087 | 1 |
ATCAACG | 11870 | 0.0 | 29.81797 | 3 |
TCAACGC | 11975 | 0.0 | 29.478016 | 4 |
GTACCTG | 4780 | 0.0 | 29.109112 | 1 |
TATCAAC | 13075 | 0.0 | 27.285625 | 2 |
CAACGCA | 13250 | 0.0 | 27.067148 | 5 |
ACCTGGG | 5030 | 0.0 | 26.071743 | 3 |
AACGCAG | 14060 | 0.0 | 25.77366 | 6 |
GTACATG | 19560 | 0.0 | 23.936224 | 1 |
CGCAGAG | 15010 | 0.0 | 23.296003 | 8 |
ACGCAGA | 15490 | 0.0 | 22.968788 | 7 |
TACATGG | 20245 | 0.0 | 22.613876 | 2 |
GTGGTAT | 3645 | 0.0 | 22.568653 | 1 |
ACATGGG | 20560 | 0.0 | 21.535831 | 3 |
TATAACG | 320 | 2.0008883E-11 | 20.564203 | 2 |
ATAACGC | 395 | 0.0 | 20.229525 | 3 |
GCAGAGT | 16390 | 0.0 | 19.929436 | 9 |
TGGTATC | 4050 | 0.0 | 19.033676 | 2 |