FastQCFastQC Report
Wed 25 May 2016
SRR2431433_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2431433_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4859399
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA324840.6684777273897451No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA65300.041.6802671
TACCTGG38350.035.666582
GTATCAA109700.032.9950871
ATCAACG118700.029.817973
TCAACGC119750.029.4780164
GTACCTG47800.029.1091121
TATCAAC130750.027.2856252
CAACGCA132500.027.0671485
ACCTGGG50300.026.0717433
AACGCAG140600.025.773666
GTACATG195600.023.9362241
CGCAGAG150100.023.2960038
ACGCAGA154900.022.9687887
TACATGG202450.022.6138762
GTGGTAT36450.022.5686531
ACATGGG205600.021.5358313
TATAACG3202.0008883E-1120.5642032
ATAACGC3950.020.2295253
GCAGAGT163900.019.9294369
TGGTATC40500.019.0336762