Basic Statistics
Measure | Value |
---|---|
Filename | SRR2431417_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4470602 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 31126 | 0.6962373300061154 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6850 | 0.0 | 49.047913 | 1 |
GTATCAA | 11505 | 0.0 | 35.705944 | 1 |
TCAACGC | 13230 | 0.0 | 29.869648 | 4 |
ATCAACG | 13350 | 0.0 | 29.568897 | 3 |
TATCAAC | 14405 | 0.0 | 28.056873 | 2 |
CAACGCA | 14165 | 0.0 | 28.030237 | 5 |
GTACATG | 23570 | 0.0 | 27.07154 | 1 |
TACATGG | 23575 | 0.0 | 26.343992 | 2 |
AACGCAG | 15230 | 0.0 | 25.982746 | 6 |
ACATGGG | 24260 | 0.0 | 24.5332 | 3 |
TACCTGG | 3620 | 0.0 | 24.044872 | 2 |
CATGGGT | 10065 | 0.0 | 24.024813 | 4 |
GTGGTAT | 3275 | 0.0 | 22.989079 | 1 |
CGCAGAG | 17175 | 0.0 | 22.410435 | 8 |
ACGCAGA | 17625 | 0.0 | 22.23897 | 7 |
ATGGGTG | 6100 | 0.0 | 20.822596 | 5 |
GTACCTG | 4360 | 0.0 | 20.721807 | 1 |
TGGTATC | 3360 | 0.0 | 20.444332 | 2 |
GCAGAGT | 18690 | 0.0 | 19.83973 | 9 |
CATGGGG | 11215 | 0.0 | 19.58972 | 4 |