FastQCFastQC Report
Wed 25 May 2016
SRR2431417_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2431417_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4470602
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT375030.8388803118685135No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT307950.6888334054339885No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT200400.448261777720316No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT92090.2059901552408378No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA86290.19301651097547937No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT65140.14570744611128436No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT62540.1398916745440547No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT61810.13825878483479406No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA141150.062.999821
GTATCAA263550.043.9827651
GTGGTAT42200.034.0986861
ATCAACG340600.033.8501633
TCAACGC344100.033.5195164
TATCAAC345200.033.467942
CAACGCA353900.032.617895
AACGCAG367350.031.4596946
TGGTATC46650.029.6340032
TATAACG4350.028.1046852
ACGCAGA412800.027.8479217
CGCAGAG413950.027.6683738
GCAGAGT442550.025.6997579
GTACATG224650.025.07721
TACATGG227600.024.2130782
CATGGGT97650.023.4499344
ACATGGG227950.023.4121443
TACCTGG34250.023.0644632
GAGTACT308550.022.81719612-13
CAGAGTA435400.022.76481610-11