FastQCFastQC Report
Wed 25 May 2016
SRR2431415_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2431415_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4033895
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA170230.4219990852513514No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA47500.048.9337651
GTATCAA86050.038.4943581
TCAACGC97200.032.9599084
ATCAACG98500.032.623263
TATCAAC106350.030.7461152
CAACGCA104600.030.4928325
AACGCAG112550.028.4764486
TACCTGG37000.026.8301852
GTACCTG39350.026.664621
GTACATG184000.026.6200081
TACATGG184350.025.5211222
CGCAGAG125600.025.1812788
ACGCAGA127400.024.9361617
ACATGGG189550.024.1011833
CATGGGT88550.022.5259174
GCAGAGT141950.021.4537289
GTGGTAT25200.019.4181611
ACCTGGG48650.019.244793
ATGGGTG53600.018.431235
ATGGGTA37650.018.1176875