Basic Statistics
Measure | Value |
---|---|
Filename | SRR2431415_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4033895 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 17023 | 0.4219990852513514 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4750 | 0.0 | 48.933765 | 1 |
GTATCAA | 8605 | 0.0 | 38.494358 | 1 |
TCAACGC | 9720 | 0.0 | 32.959908 | 4 |
ATCAACG | 9850 | 0.0 | 32.62326 | 3 |
TATCAAC | 10635 | 0.0 | 30.746115 | 2 |
CAACGCA | 10460 | 0.0 | 30.492832 | 5 |
AACGCAG | 11255 | 0.0 | 28.476448 | 6 |
TACCTGG | 3700 | 0.0 | 26.830185 | 2 |
GTACCTG | 3935 | 0.0 | 26.66462 | 1 |
GTACATG | 18400 | 0.0 | 26.620008 | 1 |
TACATGG | 18435 | 0.0 | 25.521122 | 2 |
CGCAGAG | 12560 | 0.0 | 25.181278 | 8 |
ACGCAGA | 12740 | 0.0 | 24.936161 | 7 |
ACATGGG | 18955 | 0.0 | 24.101183 | 3 |
CATGGGT | 8855 | 0.0 | 22.525917 | 4 |
GCAGAGT | 14195 | 0.0 | 21.453728 | 9 |
GTGGTAT | 2520 | 0.0 | 19.418161 | 1 |
ACCTGGG | 4865 | 0.0 | 19.24479 | 3 |
ATGGGTG | 5360 | 0.0 | 18.43123 | 5 |
ATGGGTA | 3765 | 0.0 | 18.117687 | 5 |