SRR2431413_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2431413_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2541583
Sequences flagged as poor quality	0
Sequence length	100
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34009	1.3381030641139795	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27828	1.0949081733706907	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17164	0.6753271484740022	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9050	0.3560772951345677	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8474	0.3334142540298704	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5774	0.22718124885160157	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5325	0.20951509354603018	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5240	0.20617072116078838	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	10710	65.41863	1
GTATCAA	21990	47.15069	1
GTGGTAT	3330	42.36251	1
TGGTATC	3435	40.245445	2
TATCAAC	28755	35.94268	2
ATCAACG	29155	35.446766	3
TCAACGC	29530	35.011864	4
TATAACG	220	34.197426	2
CAACGCA	30245	34.168625	5
ATAACGC	290	34.047348	3
AACGCAG	31480	32.90416	6
CGCAGAG	35065	29.352442	8
ACGCAGA	35355	29.244606	7
TACCTGG	2105	28.145863	2
CATGGGT	9325	27.983212	4
GCAGAGT	37160	27.394077	9
GTACATG	18525	26.043169	1
TACATGG	18605	25.753761	2
ACATGGG	18585	25.222874	3
TCTGTCG	700	24.84149	8