FastQCFastQC Report
Wed 25 May 2016
SRR2431400_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2431400_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2679199
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT253190.9450212544868821No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT194390.7255526745120464No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT172240.642878711137172No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT148130.5528891284298031No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70110.2616826894904037No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40960.15288151421376314No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39780.148477212778894No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36040.13451781670566462No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATAACG3600.062.71062
GGTATCA80150.061.2642821
TACCTGG29950.048.6818582
ATAACGC4950.047.5044863
GTATCAA166400.047.486081
GTACCTG31250.046.958581
ACCTGGG35300.040.1015933
ATCAACG218950.035.9137843
TATCAAC219850.035.7694362
TCAACGC221250.035.517864
CAACGCA227900.034.5640075
AACGCAG237250.033.4581076
TAACGCA7750.032.7676774
ACGCAGA264150.029.9441137
CGCAGAG264900.029.8593318
TCTGTCG6050.028.7424838
GCAGAGT281100.028.0052859
GTACATG151650.026.7346941
TATCACG3200.026.4560362
GTCTCGC7200.025.476661