SRR2431400_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2431400_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2679199
Sequences flagged as poor quality	0
Sequence length	100
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25319	0.9450212544868821	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19439	0.7255526745120464	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17224	0.642878711137172	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14813	0.5528891284298031	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7011	0.2616826894904037	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4096	0.15288151421376314	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3978	0.148477212778894	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3604	0.13451781670566462	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATAACG	360	62.7106	2
GGTATCA	8015	61.264282	1
TACCTGG	2995	48.681858	2
ATAACGC	495	47.504486	3
GTATCAA	16640	47.48608	1
GTACCTG	3125	46.95858	1
ACCTGGG	3530	40.101593	3
ATCAACG	21895	35.913784	3
TATCAAC	21985	35.769436	2
TCAACGC	22125	35.51786	4
CAACGCA	22790	34.564007	5
AACGCAG	23725	33.458107	6
TAACGCA	775	32.767677	4
ACGCAGA	26415	29.944113	7
CGCAGAG	26490	29.859331	8
TCTGTCG	605	28.742483	8
GCAGAGT	28110	28.005285	9
GTACATG	15165	26.734694	1
TATCACG	320	26.456036	2
GTCTCGC	720	25.47666	1