SRR2431396_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2431396_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2504966
Sequences flagged as poor quality	0
Sequence length	100
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31445	1.255306459249347	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24549	0.980013301577746	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17377	0.6937020302870378	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10609	0.42351872240980515	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6463	0.25800749391408906	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5567	0.2222385453535098	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4612	0.1841142754033388	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4415	0.17624989720419357	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	8945	66.91247	1
GTATCAA	18465	46.546375	1
TATAACG	240	39.181202	2
GTGGTAT	2610	38.910988	1
TGGTATC	2540	38.87269	2
ATCAACG	24430	35.063713	3
TATCAAC	24450	35.03713	2
TCAACGC	24660	34.698547	4
CAACGCA	25400	33.650627	5
AACGCAG	26350	32.514942	6
CGCAGAG	29480	28.871405	8
ACGCAGA	29605	28.797127	7
GCAGAGT	30910	27.338055	9
GTACATG	15535	27.148148	1
CATGGGT	6680	26.604084	4
TACATGG	15495	26.489985	2
ACATGGG	15505	25.561644	3
ATAACGC	410	25.227362	3
GAGTACT	22500	23.66597	12-13
TACCTGG	1730	23.644611	2